View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5934_high_3 (Length: 379)
Name: NF5934_high_3
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 54246897 - 54247242
Alignment:
| Q |
16 |
acctcaactgactacaaaattgaaacttgatagacattacaacatagatatttgtttttaccggtccaaaaatgaaacaaaaagaaattcaggtgacgag |
115 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54246897 |
acctcaactgactgcaaagttgaaacttgatagacattacaacatagatatttgtttttaccggtccaaaaatgaaacaaaaagaaattcaggtgacgag |
54246996 |
T |
|
| Q |
116 |
ctcattatgaagacaatgtacaaactacaaagtacaatgttttaaatttgtcattgatgggatcatgcaaccggacctaccttatgtattgtatccagct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54246997 |
ctcattatgaagacaatgtacaaactacaaagtacaatgttttaaatttgtcattgatgggatcatgcaaccggacctaccttatgtattgtatccagct |
54247096 |
T |
|
| Q |
216 |
tacaattaaactatgcaaatttcaaccnnnnnnntactatgctactttactatatatgtagacaaaaggttaaagcaattttcatatnnnnnnnnnnnng |
315 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
54247097 |
tacaattaaactatgctaatttcaaccaaaaaaatactatgctactttactatatatgtagacaaaaggttaaagtaattttcatataaaaaagaaaaag |
54247196 |
T |
|
| Q |
316 |
gctaaagtaatgagctacacagtatgagtaatctatttcgtgcttc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54247197 |
gctaaagtaatgagctacacagtatgagtaatctatttcgtgcttc |
54247242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University