View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934_low_1 (Length: 651)

Name: NF5934_low_1
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934_low_1
NF5934_low_1
[»] chr4 (6 HSPs)
chr4 (14-647)||(54247301-54247908)
chr4 (69-187)||(54245715-54245834)
chr4 (450-486)||(5609309-5609345)
chr4 (450-486)||(34844865-34844901)
chr4 (450-486)||(40058959-40058995)
chr4 (450-486)||(49287912-49287948)
[»] chr7 (5 HSPs)
chr7 (415-519)||(8435769-8435873)
chr7 (450-520)||(11910027-11910097)
chr7 (447-492)||(12211636-12211681)
chr7 (446-486)||(21835205-21835245)
chr7 (450-486)||(30579397-30579433)
[»] chr8 (1 HSPs)
chr8 (454-520)||(24339696-24339762)
[»] scaffold0199 (1 HSPs)
scaffold0199 (450-492)||(8508-8550)
[»] chr3 (3 HSPs)
chr3 (447-497)||(12279526-12279576)
chr3 (450-486)||(26174167-26174203)
chr3 (450-486)||(53234017-53234053)
[»] chr2 (2 HSPs)
chr2 (450-488)||(36390673-36390711)
chr2 (450-486)||(4567544-4567580)
[»] chr6 (1 HSPs)
chr6 (450-486)||(11448925-11448961)
[»] chr5 (1 HSPs)
chr5 (450-486)||(25586986-25587022)
[»] chr1 (6 HSPs)
chr1 (450-486)||(8077701-8077737)
chr1 (450-486)||(9500462-9500498)
chr1 (450-486)||(15059509-15059545)
chr1 (450-486)||(18646907-18646943)
chr1 (452-492)||(19034487-19034527)
chr1 (450-486)||(46113509-46113545)


Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 647
Target Start/End: Original strand, 54247301 - 54247908
Alignment:
Q  14 taaatatcttatatgtttgtcaaaaaagaattatcgtatttaatctcttccataaggataactaaaggaaaagttgaaaaccctctacattaaattttct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54247301 taaatatcttatatgtttgtcaaaaaagaattatcgtatttaatttcttccataaggataactaaaggaaaagttgaaaacactctacattaaattttct 54247400  T
Q  114 ttttctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacatatgtcatcatgatttatataagagttggtaatatgatttcatcaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54247401 ttttctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacatatgtcatcatgatttatataagagttggtaatatgatttcatcaaat 54247500  T
Q  214 ttaccgtgattcttaacatactaaaaatttaggatttaatttttgcttctcattagtctcattaggatgtcttagttcgctttgagtttgggtgtttgct 313  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54247501 ttatcgtgattctaaacatactaaaaatttaggatttaatttttgcttctcattagtctcattaggatgtcttagttcgctttgagtttgggtgtttgct 54247600  T
Q  314 ctatttgtgttggctttacacacctccttatgctctattagtctccttatgctctatttgtgttcgtaaaccataatatacaatatacaaagacctagtt 413  Q
    ||||||||||||||||| ||||||||||||||                   |||||||| |||||||||||| ||||||||||||||||||||  ||||     
T  54247601 ctatttgtgttggctttgcacacctccttatg-------------------ctctatttatgttcgtaaaccgtaatatacaatatacaaagatttagtg 54247681  T
Q  414 attgacttgagatcttcaagtttacttttttggagatctcaggttcgattttctctggtaccaatttcggtggacaagtttatatgaagctttgttgtgg 513  Q
    ||||| |||||||||| |||||||||| ||| |        | ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||     
T  54247682 attgatttgagatcttgaagtttacttctttag--------gattcgattttctcttgtatcaatttcggtggacaagtctatatgaagctttgttgtga 54247773  T
Q  514 ctttaaatgtcgtctccgttattgagcgatgaattgatcccctcatattaatcggttgttgaactggatactgagttttgaaag--nnnnnnnnncgaaa 611  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||           |||||    
T  54247774 ctttaaatgtcatctccgttattgagcgatgaattgat-ccctcatattaatcggttattgaactggatactgagttttgaaagaaaaaaaaaaacgaaa 54247872  T
Q  612 ggaaaaacaataacattgtttgattatattcttcga 647  Q
    ||||||||||||||||||||||||||||||||||||    
T  54247873 ggaaaaacaataacattgtttgattatattcttcga 54247908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 54245715 - 54245834
Alignment:
Q  69 ggataactaaaggaaaagttgaaaaccc-tctacattaaattttctttttctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacata 167  Q
    |||| ||||||| ||||||||||||| | | ||| || |||||| |||  |  ||||||||||||||| || |||||| ||||| |||||||| |||||     
T  54245715 ggatgactaaagaaaaagttgaaaactcgtatacgttcaattttatttaccctcttcaagttgaatgtgtgaattaaaagtgagttgaagaaagtacatg 54245814  T
Q  168 tgtcatcatgatttatataa 187  Q
    ||||||||||||| ||||||    
T  54245815 tgtcatcatgattaatataa 54245834  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 5609345 - 5609309
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  5609345 tctcaggttcgattctctctggtgccaatttcggtgg 5609309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 34844901 - 34844865
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  34844901 tctcaggttcgattctctctggtgccaatttcggtgg 34844865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 40058995 - 40058959
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  40058995 tctcaggttcgattctctctggtgccaatttcggtgg 40058959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 49287912 - 49287948
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  49287912 tctcaggttcgattctctctggtgccaatttcggtgg 49287948  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 519
Target Start/End: Complemental strand, 8435873 - 8435769
Alignment:
Q  415 ttgacttgagatcttcaagtttacttttttggagatctcaggttcgattttctctggtaccaatttcggtggacaagtttatatgaagctttgttgtggc 514  Q
    |||||||| ||||||  ||||| ||  |||| |||||| ||||||||||| ||||||| ||||||||||||| |||||  |||  |||||||||| ||||    
T  8435873 ttgacttgggatcttggagtttgctcctttgaagatcttaggttcgatttcctctggtgccaatttcggtgggcaagtccatacaaagctttgttttggc 8435774  T
Q  515 tttaa 519  Q
    |||||    
T  8435773 tttaa 8435769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 520
Target Start/End: Complemental strand, 11910097 - 11910027
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtggacaagtttatatgaagctttgttgtggctttaaa 520  Q
    |||||||||| ||||||||||||  |||||| ||||| |||||  ||| ||||||||||| | ||||||||    
T  11910097 tctcaggttcaattttctctggtgtcaattttggtggtcaagtccatacgaagctttgttctagctttaaa 11910027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 492
Target Start/End: Complemental strand, 12211681 - 12211636
Alignment:
Q  447 agatctcaggttcgattttctctggtaccaatttcggtggacaagt 492  Q
    |||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  12211681 agatctcaggtttgatttcctctggtgccaatttcgatggacaagt 12211636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 21835205 - 21835245
Alignment:
Q  446 gagatctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||||||  ||||||| |||||||||||||    
T  21835205 gagatctcaggttcgattccctctggtgccaatttcggtgg 21835245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 30579397 - 30579433
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  30579397 tctcaggttcgattttctctggtgccaatttaggtgg 30579433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 24339762 - 24339696
Alignment:
Q  454 aggttcgattttctctggtaccaatttcggtggacaagtttatatgaagctttgttgtggctttaaa 520  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||  |||||||| | ||||||||||    
T  24339762 aggttcgattttctcttgtaccaatttcggtggataagttcatacaaagctttgctttggctttaaa 24339696  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 8550 - 8508
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtggacaagt 492  Q
    |||||||||||||| |||||||| ||||||||||||| |||||    
T  8550 tctcaggttcgattatctctggtgccaatttcggtgggcaagt 8508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 12279576 - 12279526
Alignment:
Q  447 agatctcaggttcgattttctctggtaccaatttcggtggacaagtttata 497  Q
    ||||||||| || |||||||||| || ||||||||||||||||||| ||||    
T  12279576 agatctcagatttgattttctctcgtgccaatttcggtggacaagtctata 12279526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 26174167 - 26174203
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  26174167 tctcaggttcgatttcctctggtgccaatttcggtgg 26174203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 53234053 - 53234017
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  53234053 tctcaggttcgattctctctggtgccaatttcggtgg 53234017  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 36390711 - 36390673
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtggac 488  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  36390711 tctcaggttcgatttcctctggtgccaatttcggtggac 36390673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 4567580 - 4567544
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  4567580 tctcaggttcgatttcctctggtgccaatttcggtgg 4567544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 11448925 - 11448961
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  11448925 tctcaggttcgattctctctggtgccaatttcggtgg 11448961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 25586986 - 25587022
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  25586986 tctcaggttcgatttcctctggtgccaatttcggtgg 25587022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 8077701 - 8077737
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  8077701 tctcaggttcgattctctctggtgccaatttcggtgg 8077737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 9500498 - 9500462
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  9500498 tctcaggttcgattctctctggtgccaatttcggtgg 9500462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 15059545 - 15059509
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  15059545 tctcaggttcgattctctctggtgccaatttcggtgg 15059509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 18646907 - 18646943
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    |||||||||||||| |||||||| |||||||||||||    
T  18646907 tctcaggttcgattctctctggtgccaatttcggtgg 18646943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 19034527 - 19034487
Alignment:
Q  452 tcaggttcgattttctctggtaccaatttcggtggacaagt 492  Q
    |||||||||||| |||||||| ||||||||||||| |||||    
T  19034527 tcaggttcgattatctctggtgccaatttcggtgggcaagt 19034487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 46113545 - 46113509
Alignment:
Q  450 tctcaggttcgattttctctggtaccaatttcggtgg 486  Q
    ||||||||||||||  |||||||||||||||||||||    
T  46113545 tctcaggttcgattccctctggtaccaatttcggtgg 46113509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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