View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934_low_10 (Length: 253)
Name: NF5934_low_10
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 11441360 - 11441162
Alignment:
| Q |
45 |
gagaaaacaattaaatagcgtttgtattcatcttatttttccatcaataccatgtaccaacattgttagcattaagttttcaagattgagcaccaaaa-t |
143 |
Q |
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| T |
11441360 |
gagaacacaattaaatagcgtttgtattcatcttatttttccatcaatacca-gtaccaacattgttagcattaagttttcaagattgagcaccaaaaat |
11441262 |
T |
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| Q |
144 |
attgtccaaaagaacaaagatatgtgatttctagtttgttcattctttttctgtctcattttactatgtacatgtttgtcattactattaaatgttcatc |
243 |
Q |
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| T |
11441261 |
attgtccaaatgaacaaagatatgtgatt-ctagtttgttcattctttttctgtctcattttactatggacatgtttgtcattactattaaatgttcatc |
11441163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 24787082 - 24786884
Alignment:
| Q |
43 |
gggagaaaacaattaaatagcgtttgtattcatcttattttt-ccatcaataccatgtaccaacattgttagcattaagttttcaagattgagcaccaaa |
141 |
Q |
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| T |
24787082 |
gggagaacacagttaaacagtgtttggattggtcttattttttccagcaacacca-gcaccaacattgttagcattaaatttttgagattgaacaccaaa |
24786984 |
T |
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| Q |
142 |
atattgtccaaaagaacaaagatatgtgatttctagtttgttcattctttttctgtctcattttactatgtacatgtttgtcattactattaaatgttca |
241 |
Q |
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| T |
24786983 |
agtttgtccaaaataccgaagacatgtcacttttagtgccttccttctttttctgtctcatttcattattgac-ggtctgtcattactatcaaatgttca |
24786885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 279341 - 279291
Alignment:
| Q |
46 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
96 |
Q |
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| T |
279341 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
279291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 636511 - 636561
Alignment:
| Q |
46 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
96 |
Q |
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|||| ||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
636511 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
636561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 822314 - 822364
Alignment:
| Q |
46 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
96 |
Q |
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|||| ||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
822314 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
822364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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