View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934_low_2 (Length: 570)
Name: NF5934_low_2
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_low_2 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 10201 - 9659
Alignment:
| Q |
16 |
atcacctagggattaattnnnnnnnncacctaggactttttagtaattttgtgcactagagatagggtttagtggtagattaacctaatataagcttttt |
115 |
Q |
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| T |
10201 |
atcacctagggattaattaaaaaaaacacctaggactttttagtaattttgtgcactagagatagggtttagtggtagattaacctaatataagcttttt |
10102 |
T |
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| Q |
116 |
caatataga-agaattgaaaaacctaatttgagtttttacactaatgaaattcttgcggcctctcaccctcttccgtcctacatctctcaatttgtcaga |
214 |
Q |
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| T |
10101 |
aaatatagggagaattgaaaaacctaatttgagtttttacatta-tcaaactcttgcggcctctcacc-tcttctgtcccacatctctcaatttgtcaga |
10004 |
T |
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| Q |
215 |
acgtaacgagttgcacctaatttgatcgaaacagttcatttgagaagcaagctatctcatttatttagtcgtaagtttggttaatttta----------a |
304 |
Q |
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| T |
10003 |
acgtaacgagttacacctaatttgatcgaaacagttcatttgagaagcaagctatctcatttatttagtcgtaagtttggttaattttaattctttctca |
9904 |
T |
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| Q |
305 |
ttattttacaaatagagattcaatattgttcaccccttcctctttatatcttaaaccactattctttttggtaagtaaattgttctttctttggaattca |
404 |
Q |
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| T |
9903 |
ttcttttacaaaaagagattcaatactgttcacgccttcctctttataacttaaaccactattcttttgggtatgtaaattgttctttctttggaattca |
9804 |
T |
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| Q |
405 |
aatattggcttcctgacaaagtgaactagctattcgttgtttatttcttgaattatttgttagattacaattgatgannnnnnnnnnccttctattattt |
504 |
Q |
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| T |
9803 |
aatattggcttcctgacaaagtgaactagctattcgttgtttatttcttgaattatttgttagattacaattgatgattttttttttccttcta----tt |
9708 |
T |
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| Q |
505 |
atgggtgtagatgaaaaatcatgatgactttcagtgttacctttatgtg |
553 |
Q |
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| T |
9707 |
atgggtgtagatgaaaagtcatgatgactttcagtgttacctttatgtg |
9659 |
T |
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