View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934_low_4 (Length: 370)
Name: NF5934_low_4
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 137 - 370
Target Start/End: Original strand, 42196438 - 42196672
Alignment:
| Q |
137 |
acacgttatgattggttgatattccaacgttgcgtaatgaacctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatn |
236 |
Q |
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| T |
42196438 |
acacgttatggttggttgatattccagcattgcgtaatgaatctgtgatggtttgcaagatatttttattttcccatctcataggatatatatttggata |
42196537 |
T |
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| Q |
237 |
nnnnnnggatatattacattatagtatttcac-ttagttgttattattattattactactttgcaatcgtttaattgacgtaattcnnnnnnngtggagt |
335 |
Q |
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| T |
42196538 |
aaaaaagaatatattacattatagtatttcactttagttgttattattattattactactttgcaatcg-ttaattgacgtaattctttttttgtggaat |
42196636 |
T |
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| Q |
336 |
aaattattttc-tttttatacagtggaatgtgaatt |
370 |
Q |
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| T |
42196637 |
aaattattttcttttttatacagtggaatgtgaatt |
42196672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 42196318 - 42196376
Alignment:
| Q |
17 |
cttctctcgagaaagagtagagaaatgtcttactttatctttcttccagcaataccctt |
75 |
Q |
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| T |
42196318 |
cttctctcgagaaagagaagagaaatgtcttactttatcttttttccagcaataccctt |
42196376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 362
Target Start/End: Original strand, 40686632 - 40686858
Alignment:
| Q |
141 |
gttatgattggttgatattccaacgttgcgtaatgaacctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatnnnnn |
240 |
Q |
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| T |
40686632 |
gttatggtttgttgatattccagcattgcgtaatgaacctgtgatggtttgcaagatctttt--tttccccatcttataggatatatatttggat-aaaa |
40686728 |
T |
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| Q |
241 |
nnggatatattacattatagtatttcacttag-------ttgttattattattattactactttgcaatcgtttaattgacgtaattc-nnnnnnngtgg |
332 |
Q |
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| T |
40686729 |
aaggatatattacatcatagtatttcactttggtggttattattattattattattgttactttacaatcg-ttaattgacgtaattcttattttggtgg |
40686827 |
T |
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| Q |
333 |
agtaaattattttc-tttttatacagtggaa |
362 |
Q |
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| T |
40686828 |
aataaattattttcttttttatacagtggaa |
40686858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 40686513 - 40686564
Alignment:
| Q |
24 |
cgagaaagagtagagaaatgtcttactttatctttcttccagcaataccctt |
75 |
Q |
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| T |
40686513 |
cgagaaagaggagagaaatgccttactttatcttttttccaacaataccctt |
40686564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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