View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934_low_6 (Length: 308)

Name: NF5934_low_6
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934_low_6
NF5934_low_6
[»] chr7 (2 HSPs)
chr7 (14-308)||(14793646-14793940)
chr7 (14-308)||(15240637-15240933)
[»] chr5 (1 HSPs)
chr5 (14-308)||(17538482-17538778)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 14793940 - 14793646
Alignment:
Q  14 cactaagatctcactcgtgctccccaccaatgatctaaacattaatgactcttaataaactatgacaccacatcttcacaaaaatctttaaagttttatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14793940 cactaagatctcactcgtgctccccaccaatgatctaaacattaatgactcttaataaactatgacttcacatcttcacaaaaatctttaaagttttatg 14793841  T
Q  114 tatatgacctttattatatatcctacgtttccatccttcatatttaaaaatctcttcacaatcaagagaacttgagaagnnnnnnnnnnnnnnnnnnnna 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |    
T  14793840 tatatgacctttattatatatcctacgtttccatccttcatatttaaaaatctcttcacaatcaagagaacttgagaagtttttttttatatttttttta 14793741  T
Q  214 aataagaacttgagaagttaataatacaaaatattaattcctttacatatccgacatgctgatctttattttcttatctgtaagctttctctcct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14793740 aataagaacttgagaagttaataatacaaaatattaattcctttacatatccgacatgctgatctttattttcttatctgtaagctttctctcct 14793646  T

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Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 15240933 - 15240637
Alignment:
Q  14 cactaagatctcactcgtgctccccaccaatgatctaaacattaatgactcttaataaactatgacaccacatcttcacaaaaatctttaaagttttatg 113  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  15240933 cactaagatctcactcgtgctccccaccaataatttaaacattaatgactctaaataaactatgactccacatcttcacaaaaatctttatagttttatg 15240834  T
Q  114 tatatgacctttattat--atatcctacgtttccatccttcat-atttaaaaatctcttcacaatcaagagaacttgagaagnnnnnnnnnnnnnnnnnn 210  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||                      
T  15240833 tatatgacctttattatatatatcctacgtttccatccttcataattaaaaaatctcttcacaatcaagagaacttgagaag-------ttttttttttt 15240741  T
Q  211 nnaaataagaacttgagaagttaataatacaaaatattaattcctttac------atatccgacatgctgatctttattttcttatctgtaagctttctc 304  Q
      |||||||||||||||||||||||||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||||||||    
T  15240740 tgaaataagaacttgagaagttaataatacaaaatattaattcctttacatgtatatatccggcatgctgatctttattttcttatctgtaagctttctc 15240641  T

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Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 17538482 - 17538778
Alignment:
Q  14 cactaagatctcactcgtgctccccaccaatgatctaaacattaatgactcttaataaactatgacaccacatcttcacaaaaatctttaaagttttatg 113  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  17538482 cactaagatctcactcgtgctccccaccaataatttaaacattaatgactctaaataaactatgactccacatcttcacaaaaatctttatagttttatg 17538581  T
Q  114 tatatgacctttat--tatatatcctacgtttccatccttcat-atttaaaaatctcttcacaatcaagagaacttgagaagnnnnnnnnnnnnnnnnnn 210  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||                      
T  17538582 tatatgacctttattatatatatcctacgtttccatccttcataattaaaaaatctcttcacaatcaagagaacttgagaag-------ttttttttttt 17538674  T
Q  211 nnaaataagaacttgagaagttaataatacaaaatattaattcctttac------atatccgacatgctgatctttattttcttatctgtaagctttctc 304  Q
      |||||||||||||||||||||||||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||||||||    
T  17538675 tgaaataagaacttgagaagttaataatacaaaatattaattcctttacatgtatatatccggcatgctgatctttattttcttatctgtaagctttctc 17538774  T

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