View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934_low_7 (Length: 298)
Name: NF5934_low_7
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 51846799 - 51846536
Alignment:
| Q |
18 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
117 |
Q |
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| T |
51846799 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
51846700 |
T |
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| Q |
118 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatattgacattgacattgaca |
217 |
Q |
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| T |
51846699 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatattgacattgacattg--- |
51846603 |
T |
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| Q |
218 |
ttgacataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846602 |
---acataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcat |
51846536 |
T |
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