View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5934_low_8 (Length: 295)
Name: NF5934_low_8
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5934_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 10342109 - 10341845
Alignment:
| Q |
16 |
gatttgaaacaatgaattgtgtccaccgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcag |
115 |
Q |
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| T |
10342109 |
gatttgaaacagtgaattgtgtccatcgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcag |
10342010 |
T |
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| Q |
116 |
tgatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacataaggtacagtggtggagatgggaaaattaaa |
215 |
Q |
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| T |
10342009 |
tgatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaa |
10341910 |
T |
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| Q |
216 |
tttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatatt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341909 |
tttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatatt |
10341845 |
T |
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