View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5934_low_9 (Length: 272)

Name: NF5934_low_9
Description: NF5934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5934_low_9
NF5934_low_9
[»] chr2 (3 HSPs)
chr2 (192-272)||(42196634-42196714)
chr2 (103-140)||(42196766-42196803)
chr2 (80-114)||(5077179-5077213)
[»] chr1 (3 HSPs)
chr1 (82-114)||(4795948-4795980)
chr1 (80-114)||(25659001-25659035)
chr1 (82-114)||(8170416-8170448)
[»] chr3 (3 HSPs)
chr3 (242-272)||(40686828-40686858)
chr3 (82-114)||(40687003-40687035)
chr3 (82-114)||(43747786-43747818)
[»] chr4 (2 HSPs)
chr4 (83-112)||(42308652-42308681)
chr4 (82-114)||(6447102-6447134)
[»] scaffold1844 (1 HSPs)
scaffold1844 (80-112)||(121-153)
[»] chr7 (1 HSPs)
chr7 (82-114)||(2430623-2430655)
[»] chr5 (1 HSPs)
chr5 (82-114)||(35468034-35468066)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 42196714 - 42196634
Alignment:
Q  192 ttaaattaaggtcaaataaattcacattccactaaatnnnnnnnttcacattccactgtataaaaaagaaaataatttatt 272  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  42196714 ttaaattaaggtcaaataaattcacattccactaaataaaaaaattcacattccactgtataaaaaagaaaataatttatt 42196634  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 42196803 - 42196766
Alignment:
Q  103 aagagaaagaagtgtgtctgatttttgaaatgacaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42196803 aagagaaagaagtgtgtctgatttttgaaatgacaaaa 42196766  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 5077179 - 5077213
Alignment:
Q  80 aaatttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  5077179 aaatttgatgtattgtttggtataagagaaagaag 5077213  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 4795948 - 4795980
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||||||||||||||||||||||||    
T  4795948 atttgatgtattatttggtataagagaaagaag 4795980  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 25659001 - 25659035
Alignment:
Q  80 aaatttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  25659001 aaatttgatgtattgtttggtataagagaaagaag 25659035  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 8170416 - 8170448
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    ||||||||||||||||| |||||||||||||||    
T  8170416 atttgatgtattatttgatataagagaaagaag 8170448  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 272
Target Start/End: Complemental strand, 40686858 - 40686828
Alignment:
Q  242 ttccactgtataaaaaagaaaataatttatt 272  Q
    |||||||||||||||||||||||||||||||    
T  40686858 ttccactgtataaaaaagaaaataatttatt 40686828  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 40687035 - 40687003
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||| ||||||||||||||||||||    
T  40687035 atttgatgtattgtttggtataagagaaagaag 40687003  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 43747786 - 43747818
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||| ||||||||||||||||||||    
T  43747786 atttgatgtattgtttggtataagagaaagaag 43747818  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 42308681 - 42308652
Alignment:
Q  83 tttgatgtattatttggtataagagaaaga 112  Q
    ||||||||||||||||||||||||||||||    
T  42308681 tttgatgtattatttggtataagagaaaga 42308652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 6447102 - 6447134
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||| ||||||||||||||||||||    
T  6447102 atttgatgtattgtttggtataagagaaagaag 6447134  T

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Target: scaffold1844 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 153 - 121
Alignment:
Q  80 aaatttgatgtattatttggtataagagaaaga 112  Q
    ||||||||||||||||||||||||| |||||||    
T  153 aaatttgatgtattatttggtataatagaaaga 121  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 2430623 - 2430655
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||| ||||||||||||||||||||    
T  2430623 atttgatgtattgtttggtataagagaaagaag 2430655  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 35468066 - 35468034
Alignment:
Q  82 atttgatgtattatttggtataagagaaagaag 114  Q
    |||||||||||| ||||||||||||||||||||    
T  35468066 atttgatgtattgtttggtataagagaaagaag 35468034  T

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