View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5935-Insertion-1 (Length: 1110)
Name: NF5935-Insertion-1
Description: NF5935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5935-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 34 - 461
Target Start/End: Complemental strand, 11441360 - 11440938
Alignment:
| Q |
34 |
gagaaaacaattaaatagcgtttgtattcatcttatttttccatcaataccatgtaccaacattgttagcattaagttttcaagattgagcaccaaaa-t |
132 |
Q |
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| T |
11441360 |
gagaacacaattaaatagcgtttgtattcatcttatttttccatcaatacca-gtaccaacattgttagcattaagttttcaagattgagcaccaaaaat |
11441262 |
T |
|
| Q |
133 |
attgtccaaaagaacaaagatatgtgatttctagtttgttcattctttttctgtctcattttactatgtacatgtttgtcattactattaaatgttcatc |
232 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11441261 |
attgtccaaatgaacaaagatatgtgatt-ctagtttgttcattctttttctgtctcattttactatggacatgtttgtcattactattaaatgttcatc |
11441163 |
T |
|
| Q |
233 |
taaaactcaagtgcaaactgcagataaagaaactcatacatagtaaaaaccgaaaactaaatagaaataggatacgtttactaattatcactttattata |
332 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||||||||| |
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| T |
11441162 |
taaaattcaagtgcaaactgcagataaagaaactcatacatagtaaaaaccaaaaagtaaacataaataggatacgtttactaattatcactttattata |
11441063 |
T |
|
| Q |
333 |
ttgtatttcaactttttgcattcttctagtcttaggatatggataatatggttggttgagtcatcaatcaaaagatgaagtttatctcttcacatacatt |
432 |
Q |
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| T |
11441062 |
ttgtatttcaactttttgcattcttctagtcttaggatatggataatatg----gttgagtcatcaatcaaaagatgaagtttatcacttcacatacatt |
11440967 |
T |
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| Q |
433 |
tatagataatttgggtttccaaattgttg |
461 |
Q |
| |
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| T |
11440966 |
tatagataatttgggtttccaaattgttg |
11440938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 791 - 1018
Target Start/End: Complemental strand, 11440607 - 11440381
Alignment:
| Q |
791 |
atgcaaaccaactcatcatcatcatattatattgaaaaactcaagaattgtgcagaaagaagatagctatgaagatttgcaggttgagatctctgttttc |
890 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11440607 |
atgcaaaccaactcatcatcatcatcttatactgaaaaactcaagaattgtgcagaaagaagatagctatgaagatttgcaggttgagatctctgttttc |
11440508 |
T |
|
| Q |
891 |
ttctatagccaaatgcaattctcaagccatctcaccatcactatcttcagcagcacacagtttctcttcaatcaatcatcacttgcaggtttctactctc |
990 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11440507 |
ttctatagccaaatgcaattctcaagccatctcaccgtcaccatcttcagcagcacacagtttctcttcaatcaatcatcacttgcaggtttctactct- |
11440409 |
T |
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| Q |
991 |
ctagtgtgatcatttgccttaacatgca |
1018 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11440408 |
ctagtgtgatcatttgccttaacatgca |
11440381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 573 - 736
Target Start/End: Complemental strand, 11440827 - 11440664
Alignment:
| Q |
573 |
attacggtgtttattaataaactaagtaaacatttcaatcacaaatcctagcttaattgataaaaacgtcaaaattattagatcaaacatcttgaaagaa |
672 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11440827 |
attacagtgtttattaataaactaagtaaacatttcaatcacaaatcctagcttaattgataaaaacgtcaaaattattagatcaaacatcttgaaagaa |
11440728 |
T |
|
| Q |
673 |
gttcgaaccacaacccctcatttatacgtgtgagtttcgatcgttattatcattattttatcta |
736 |
Q |
| |
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|||||||| |||| |||||||| ||||||||||||||| || |||||||||||||||||||||| |
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| T |
11440727 |
gttcgaactacaatccctcattcatacgtgtgagtttcaatggttattatcattattttatcta |
11440664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 32 - 264
Target Start/End: Complemental strand, 24787082 - 24786851
Alignment:
| Q |
32 |
gggagaaaacaattaaatagcgtttgtattcatcttattttt-ccatcaataccatgtaccaacattgttagcattaagttttcaagattgagcaccaaa |
130 |
Q |
| |
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||||||| ||| ||||| || ||||| ||| |||||||||| ||| ||| |||| | |||||||||||||||||||| |||| ||||||| ||||||| |
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| T |
24787082 |
gggagaacacagttaaacagtgtttggattggtcttattttttccagcaacacca-gcaccaacattgttagcattaaatttttgagattgaacaccaaa |
24786984 |
T |
|
| Q |
131 |
atattgtccaaaagaacaaagatatgtgatttctagtttgttcattctttttctgtctcattttactatgtacatgtttgtcattactattaaatgttca |
230 |
Q |
| |
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| |||||||||| | | |||| |||| | || |||| ||| ||||||||||||||||||| | ||| || || |||||||||||| ||||||||| |
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| T |
24786983 |
agtttgtccaaaataccgaagacatgtcacttttagtgccttccttctttttctgtctcatttcattattgac-ggtctgtcattactatcaaatgttca |
24786885 |
T |
|
| Q |
231 |
tctaaaactcaagtgcaaactgcagataaagaaa |
264 |
Q |
| |
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| |||||| |||||| | ||||||| |||||||| |
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| T |
24786884 |
tataaaacgcaagtgtagactgcaggtaaagaaa |
24786851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 615 - 657
Target Start/End: Complemental strand, 9174743 - 9174701
Alignment:
| Q |
615 |
aaatcctagcttaattgataaaaacgtcaaaattattagatca |
657 |
Q |
| |
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||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
9174743 |
aaatcctagctcaattgataaaaatgtcaaaattgttagatca |
9174701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 279341 - 279291
Alignment:
| Q |
35 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
85 |
Q |
| |
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|||| ||||| ||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
279341 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
279291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 636511 - 636561
Alignment:
| Q |
35 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
85 |
Q |
| |
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|||| ||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
636511 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
636561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 822314 - 822364
Alignment:
| Q |
35 |
agaaaacaattaaatagcgtttgtattcatcttatttttccatcaatacca |
85 |
Q |
| |
|
|||| ||||| ||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
822314 |
agaacacaatgaaacagtgtttgtattcatcttatttttccatcaatacca |
822364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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