View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5935-Insertion-7 (Length: 555)
Name: NF5935-Insertion-7
Description: NF5935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5935-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Complemental strand, 10342109 - 10341584
Alignment:
| Q |
9 |
gatttgaaacaatgaattgtgtccaccgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcag |
108 |
Q |
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| T |
10342109 |
gatttgaaacagtgaattgtgtccatcgtaaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcag |
10342010 |
T |
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| Q |
109 |
tgatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacataaggtacagtggtggagatgggaaaattaaa |
208 |
Q |
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| T |
10342009 |
tgatatgctgcaaagtaagaaaagcacatagtcaaataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaa |
10341910 |
T |
|
| Q |
209 |
tttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttacttt |
308 |
Q |
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| T |
10341909 |
tttggtttaatattcaaatttctaactaaacaatggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttacttt |
10341810 |
T |
|
| Q |
309 |
tattatcatataagaatttagaagttttggcgagttcggtttcagaagctcaacagtgtcagggtagacatgagatgagttgcagacaaatcttcgttaa |
408 |
Q |
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| T |
10341809 |
tattatcatataagaatttagaagttttggcgagttcggtttcagaagctcaacagtgtcagggtagacataagatgagttgcagacaaatcttcgttaa |
10341710 |
T |
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| Q |
409 |
actttcataacactatgcttcaaaatattcacatatgttgttgagatcggaaatgtctctataactatactaccaaggttgaactattgctagcagccta |
508 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341709 |
actttcat--------------aaatattcacatatgttgttgagatcggaaatgtctctataactatactaccaaggttgaactattgctagcagccta |
10341624 |
T |
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| Q |
509 |
gtataatggaaggcaatagtgtcatttttgttgttgttgt |
548 |
Q |
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| T |
10341623 |
gtataatggaaggcaatagtgtcatttttgttgttgttgt |
10341584 |
T |
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