View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936-Insertion-1 (Length: 1100)
Name: NF5936-Insertion-1
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 384 - 1005
Target Start/End: Original strand, 18433780 - 18434399
Alignment:
| Q |
384 |
ggtgtctcatatagtgtactatatttaatatgatgttcaaatacaactctttgtctagacggtactatgcgaatcattgcgggcgtgcaagcgcccccac |
483 |
Q |
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| T |
18433780 |
ggtgtctcatatagtgtactatatttgatatgatgttcaaatacaactctttgcttggatggtcctatgcgaatcattgcggg--tgcaagctcccccac |
18433877 |
T |
|
| Q |
484 |
cttgttttcaacaaatttcccttaatgctatatatgtttttccttattacttaaaacatttggttgtgtgacagtgtctttggttaaagttgattgattt |
583 |
Q |
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| T |
18433878 |
cttgttttcaacaaatttcccttaatactacatatgtttttccttattacttaaaacttttggttgtgtgacagtgtctttggttaaaggagattgattt |
18433977 |
T |
|
| Q |
584 |
acacatgaccataagagatggtcaaagaaggtgcaacaatactattgtggttgttgatagtggttgttt--attgtttttcactagtgcattgtgatgta |
681 |
Q |
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| T |
18433978 |
acacatgaccataagagatggtcaaagaaggtgtaacaatactaccgtggttgttgatagtggttttttttattgtttttcactagtgcattgtgatgta |
18434077 |
T |
|
| Q |
682 |
tccataaagatgcttcaacgctcaagttagtgaggtcttaaggtgctttgaggattatctctgaatgagaatgtgtacatatttttgtggtgggttgata |
781 |
Q |
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| T |
18434078 |
tccataaagacgctccaacgctcaagttaacgaggtctcaaggtgctttgaggattatctctgaatgagaatatgtacatatttttgtggtgggttgata |
18434177 |
T |
|
| Q |
782 |
tatttatagattcctaggtggcacataagtgtgtgtttgtttgtgcatgtatgtgtattttgatggttgtattgttatgggg-caatgtcaagtgacttc |
880 |
Q |
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| T |
18434178 |
tatttatagattcctagatggcatatgagtgtgtgtttgtttgtgcatgtatgtgtattttgatggttgtattgttatggggaaaatgtcaagtgac-tg |
18434276 |
T |
|
| Q |
881 |
cttgatttcttagagtg-taatattgtcttttaagcatcttattgggtgcttcatgacttgatgttggaacatgtgatttgtaggatgtctttaggccgc |
979 |
Q |
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| T |
18434277 |
cttgatttcttagagtgctaatattgtc-tttaagcatcttatttggtgcttcatgactttatgttggaacatgtgatttata-gatgtctttagg-cgt |
18434373 |
T |
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| Q |
980 |
cttatgggcctttaaatttgttagta |
1005 |
Q |
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| T |
18434374 |
cttattgggctttaaatttgttagta |
18434399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 18433409 - 18433728
Alignment:
| Q |
9 |
caaaatacattttctttgaaaaaattagtaaatatacgtgtgatcaattaataatagttgcatctaatgaaaggagccagactctcatgcaatcaatgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
18433409 |
caaaatacattttctttgaaaaaattagtaaatataagtgtgatcaattaatgagagttgcatctaatgaaaggagccaaactctcatgcaatcaataaa |
18433508 |
T |
|
| Q |
109 |
cacccttgattccatcttcacacttcacaactatgtcgtcgttgtgggttgagctccaaatgtttgtatcatataggatgtctaatcgatggagggacaa |
208 |
Q |
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| T |
18433509 |
cacccttgattccatcttcacacttcacaactatgtcgtcgttgcgagttgagctccaaatgtttgtatcatataggatgtctaatcgatggagggataa |
18433608 |
T |
|
| Q |
209 |
aaatcacataacttgaaatttgagataaccaaaattctaaattttgaaataataaattatattttaacatcaaaattttgatgccaaatacaatattctt |
308 |
Q |
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| T |
18433609 |
aattcacttaacttgaaatttgagataaccaaaattctaaattttgaaataataaattatattttaacatcaaaattttgatgtcaaatacaatattctt |
18433708 |
T |
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| Q |
309 |
tgatttttatatctaattgt |
328 |
Q |
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| T |
18433709 |
tgatttttatatctaattgt |
18433728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 28852251 - 28852202
Alignment:
| Q |
260 |
ataaattatattttaacatcaaaattttgatgccaaatacaatattcttt |
309 |
Q |
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||||||||| |||| ||||| ||||| |||||||||||||||| |||||| |
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| T |
28852251 |
ataaattatcttttgacatcgaaattgtgatgccaaatacaattttcttt |
28852202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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