View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936-Insertion-4 (Length: 933)
Name: NF5936-Insertion-4
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 899; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 899; E-Value: 0
Query Start/End: Original strand, 8 - 933
Target Start/End: Complemental strand, 51846799 - 51845880
Alignment:
| Q |
8 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
107 |
Q |
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| T |
51846799 |
atagatgccctttaatatatgtagtgttgtgcaaaactcattgttcaccgctaagctttgagaggatcattcatgaatacttcattgttggttcaagatg |
51846700 |
T |
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| Q |
108 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatattgacattgacattgaca |
207 |
Q |
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| T |
51846699 |
ctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatattgacattgacattgaca |
51846600 |
T |
|
| Q |
208 |
ttgacataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgt |
307 |
Q |
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| T |
51846599 |
t------aaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgt |
51846506 |
T |
|
| Q |
308 |
gcaagcagccccaatttgaagaagttgcaacatatgattaattgaatcttgattgtttgctgttaactctggatcaatcaattcagcttctcttctctca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846505 |
gcaagcagccccaatttgaagaagttgcaacatatgattaattgaatcttgattgtttgctgttaactctggatcaatcaattcagcttctcttctctca |
51846406 |
T |
|
| Q |
408 |
gaaattgctgtgaacacccattgaacaacatctgtaccacctttaccattactgtgatattgagaagggaattttcctgtaatgatttcaagaatgatga |
507 |
Q |
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| T |
51846405 |
gaaattgctgtgaacacccattgaacaacatcagtaccacctttaccattactgtgatattgagaagggaattttcctgtaatgatttcaagaatgatga |
51846306 |
T |
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| Q |
508 |
ttccgagacaataaacatcggttttctgtgaaacatgttggtaaagaacgtaatcaggagttttgtatgcaaacattgtttgtgttgcatgacttgagtt |
607 |
Q |
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| T |
51846305 |
ttccgagacaataaacatcggttttctgtgaaacatgttggtaaagaacgtaatcaggagttttgtatgcaaacattgtttgtgttgcatgacttgagtt |
51846206 |
T |
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| Q |
608 |
gattaatggatgaaatgcaaagtcacttaagagtggctcataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggat |
707 |
Q |
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| T |
51846205 |
gattaatggatgaaatgcaaagtcacttaagagtggctcataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggat |
51846106 |
T |
|
| Q |
708 |
tcaaattcagtataaagaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcac |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846105 |
tcaaattcagtataaagaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcac |
51846006 |
T |
|
| Q |
808 |
ctgtacaacaaacattacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaa |
907 |
Q |
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| T |
51846005 |
ctgtacaacaaacattacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaa |
51845906 |
T |
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| Q |
908 |
ataaaatgtgacagcgttaccatgca |
933 |
Q |
| |
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| T |
51845905 |
ataaaatgtgacagcgttaccatgca |
51845880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 370 - 691
Target Start/End: Original strand, 18627242 - 18627563
Alignment:
| Q |
370 |
ttaactctggatcaatcaattcagcttctcttctctcagaaattgctgtgaacacccattgaacaacatctgtaccacctttaccattactgtgatattg |
469 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| || |
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| T |
18627242 |
ttaactcaggatcaatcaattcagcttctcttctctcagaaattgctgtgaggacccattgaacaacatcggttccacctttaccgttactatgatactg |
18627341 |
T |
|
| Q |
470 |
agaagggaattttcctgtaatgatttcaagaatgatgattccgagacaataaacatcggttttctgtgaaacatgttggtaaagaacgtaatcaggagtt |
569 |
Q |
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| T |
18627342 |
agaagggaattttcctgtaatgagttcaagaatgatgattccgagacaataaacatcggctttctgcgaaagcttttggttttgaacgtaatccggtgtt |
18627441 |
T |
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| Q |
570 |
ttgtatgcaaacattgtttgtgttgcatgacttgagttgattaatggatgaaatgcaaagtcacttaagagtggctcataattatcggctagaagtatat |
669 |
Q |
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| T |
18627442 |
ttgtatgcaaacattgattgcactgcaatgctagggttgattagtggttgaaaagcatagtcacttaaaagaggctcataatcatcagttagtagaacat |
18627541 |
T |
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| Q |
670 |
tgcttgatttgaggtttccatg |
691 |
Q |
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| T |
18627542 |
tgcttgatttgaggtttccatg |
18627563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 18627120 - 18627214
Alignment:
| Q |
248 |
ttcctctatcctcctaattgcttccttcatgttaagtcgttgttcagggttactttctgtgcaagcagccccaatttgaagaagttgcaacatat |
342 |
Q |
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|||||||||||| ||||| ||||||||||||| |||| |||||| || || ||||| || |||||||| ||||| | |||||||||| ||||| |
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| T |
18627120 |
ttcctctatccttctaatagcttccttcatgtgtagtctttgttccggattgctttcagtacaagcagcaccaataaggagaagttgcagcatat |
18627214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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