View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936-Insertion-5 (Length: 863)
Name: NF5936-Insertion-5
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 9 - 751
Target Start/End: Original strand, 54246897 - 54247639
Alignment:
| Q |
9 |
acctcaactgactacaaaattgaaacttgatagacattacaacatagatatttgtttttaccggtccaaaaatgaaacaaaaagaaattcaggtgacgag |
108 |
Q |
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| T |
54246897 |
acctcaactgactgcaaagttgaaacttgatagacattacaacatagatatttgtttttaccggtccaaaaatgaaacaaaaagaaattcaggtgacgag |
54246996 |
T |
|
| Q |
109 |
ctcattatgaagacaatgtacaaactacaaagtacaatgttttaaatttgtcattgatgggatcatgcaaccggacctaccttatgtattgtatccagct |
208 |
Q |
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| T |
54246997 |
ctcattatgaagacaatgtacaaactacaaagtacaatgttttaaatttgtcattgatgggatcatgcaaccggacctaccttatgtattgtatccagct |
54247096 |
T |
|
| Q |
209 |
tacaattaaactatgcaaatttcaaccnnnnnnntactatgctactttactatatatgtagacaaaaggttaaagcaattttcatatnnnnnnnnnnnng |
308 |
Q |
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| T |
54247097 |
tacaattaaactatgctaatttcaaccaaaaaaatactatgctactttactatatatgtagacaaaaggttaaagtaattttcatataaaaaagaaaaag |
54247196 |
T |
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| Q |
309 |
gctaaagtaatgagctacacagtatgagtaatctatttcgtgcttcgtttcacaaaggctttagtgcacatgtaataacaaatcatcttactgtgtcnnn |
408 |
Q |
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| T |
54247197 |
gctaaagtaatgagctacacagtatgagtaatctatttcgtgcttcgtttcacaaaggctttagtgcacatgtaataacaaatcatcttactgtgtcaaa |
54247296 |
T |
|
| Q |
409 |
nnnntaaatatcttatatgtttgtcaaaaaagaattatcgtatttaatttcttccataaggataactaaaggaaaagttgaaaaccctctacattaaatt |
508 |
Q |
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| T |
54247297 |
aaaataaatatcttatatgtttgtcaaaaaagaattatcgtatttaatttcttccataaggataactaaaggaaaagttgaaaacactctacattaaatt |
54247396 |
T |
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| Q |
509 |
ttctttttctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacatatgtcatcatgatttatataagagttggtaatatgatttcatc |
608 |
Q |
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| T |
54247397 |
ttctttttctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacatatgtcatcatgatttatataagagttggtaatatgatttcatc |
54247496 |
T |
|
| Q |
609 |
aaatttaccgtgattcttaacatactaaaaatttaggatttaatttttgcttctcattagtctcattaggatgtcttagttcgctttgagtttgggtgtt |
708 |
Q |
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| T |
54247497 |
aaatttatcgtgattctaaacatactaaaaatttaggatttaatttttgcttctcattagtctcattaggatgtcttagttcgctttgagtttgggtgtt |
54247596 |
T |
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| Q |
709 |
tgctctatttgtgttggctttacacacctccttatgctctatt |
751 |
Q |
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| T |
54247597 |
tgctctatttgtgttggctttgcacacctccttatgctctatt |
54247639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 421 - 586
Target Start/End: Original strand, 54245666 - 54245834
Alignment:
| Q |
421 |
ttatatgtttgtcaaaaaagaattatcgtatttaatttcttccataag----gataactaaaggaaaagttgaaaaccc-tctacattaaattttctttt |
515 |
Q |
| |
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|||||||||||| |||||| | ||| |||||||||||||||||| | ||| ||||||| ||||||||||||| | | ||| || |||||| ||| |
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| T |
54245666 |
ttatatgtttgtaaaaaaaaag--atcttatttaatttcttccataggtagggatgactaaagaaaaagttgaaaactcgtatacgttcaattttattta |
54245763 |
T |
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| Q |
516 |
tctccttcaagttgaatgtttggattaaaggtgagctgaagaaattacatatgtcatcatgatttatataa |
586 |
Q |
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| T |
54245764 |
ccctcttcaagttgaatgtgtgaattaaaagtgagttgaagaaagtacatgtgtcatcatgattaatataa |
54245834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 773 - 839
Target Start/End: Original strand, 54247642 - 54247708
Alignment:
| Q |
773 |
tgttcgtaaaccataatatacaatatacaaagacctagttattgacttgagatcttcaagtttactt |
839 |
Q |
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| T |
54247642 |
tgttcgtaaaccgtaatatacaatatacaaagatttagtgattgatttgagatcttgaagtttactt |
54247708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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