View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5936-Insertion-6 (Length: 750)

Name: NF5936-Insertion-6
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5936-Insertion-6
NF5936-Insertion-6
[»] chr2 (17 HSPs)
chr2 (9-329)||(44203793-44204114)
chr2 (361-647)||(44204123-44204420)
chr2 (470-558)||(27327862-27327955)
chr2 (470-558)||(32473486-32473579)
chr2 (470-558)||(38721415-38721508)
chr2 (470-558)||(40739524-40739617)
chr2 (470-510)||(33150090-33150130)
chr2 (470-549)||(37486040-37486124)
chr2 (470-510)||(42955118-42955158)
chr2 (448-510)||(15178086-15178148)
chr2 (446-510)||(36490564-36490625)
chr2 (447-507)||(38532442-38532499)
chr2 (470-507)||(20128759-20128796)
chr2 (470-558)||(20195304-20195397)
chr2 (470-558)||(32070476-32070569)
chr2 (470-511)||(34240839-34240880)
chr2 (470-558)||(42579051-42579144)
[»] scaffold0531 (1 HSPs)
scaffold0531 (448-514)||(7002-7065)
[»] chr3 (16 HSPs)
chr3 (470-568)||(32589330-32589433)
chr3 (470-508)||(49562050-49562088)
chr3 (470-515)||(32814708-32814753)
chr3 (473-510)||(34935623-34935660)
chr3 (470-558)||(51760184-51760277)
chr3 (470-507)||(54690526-54690563)
chr3 (470-514)||(7672774-7672818)
chr3 (470-510)||(16894255-16894295)
chr3 (471-515)||(20821457-20821501)
chr3 (470-510)||(24599964-24600004)
chr3 (470-510)||(29076610-29076650)
chr3 (470-510)||(42595822-42595862)
chr3 (470-510)||(43898108-43898148)
chr3 (470-507)||(12569190-12569227)
chr3 (470-507)||(13545654-13545691)
chr3 (470-515)||(23317031-23317076)
[»] chr1 (21 HSPs)
chr1 (470-558)||(21909873-21909966)
chr1 (470-558)||(48605102-48605195)
chr1 (446-558)||(50998298-50998412)
chr1 (470-558)||(27549077-27549170)
chr1 (470-507)||(48376893-48376930)
chr1 (470-510)||(3160765-3160805)
chr1 (470-510)||(3606276-3606316)
chr1 (470-510)||(4682952-4682992)
chr1 (470-510)||(12447469-12447509)
chr1 (470-510)||(12993636-12993676)
chr1 (470-510)||(34598947-34598987)
chr1 (470-510)||(37255141-37255181)
chr1 (470-510)||(39181064-39181104)
chr1 (470-510)||(42140415-42140455)
chr1 (477-567)||(28237094-28237189)
chr1 (470-508)||(3160837-3160875)
chr1 (470-508)||(31634479-31634517)
chr1 (470-507)||(15013672-15013709)
chr1 (470-558)||(21852452-21852545)
chr1 (470-507)||(33324133-33324170)
chr1 (447-510)||(39015558-39015618)
[»] scaffold0013 (1 HSPs)
scaffold0013 (470-584)||(58305-58425)
[»] chr4 (20 HSPs)
chr4 (470-544)||(11583753-11583832)
chr4 (470-558)||(16391207-16391300)
chr4 (470-558)||(26206609-26206702)
chr4 (470-558)||(30162643-30162736)
chr4 (470-558)||(44639778-44639871)
chr4 (470-556)||(48042625-48042716)
chr4 (470-558)||(39294205-39294298)
chr4 (470-510)||(17659550-17659590)
chr4 (470-510)||(39754114-39754154)
chr4 (470-510)||(50038465-50038505)
chr4 (470-510)||(50045687-50045727)
chr4 (470-510)||(50519347-50519387)
chr4 (470-548)||(45070850-45070932)
chr4 (446-507)||(55131624-55131682)
chr4 (470-508)||(16391761-16391799)
chr4 (470-558)||(4711421-4711514)
chr4 (470-558)||(41788953-41789046)
chr4 (470-558)||(45890937-45891030)
chr4 (470-558)||(46996506-46996599)
chr4 (447-510)||(53019221-53019281)
[»] chr8 (17 HSPs)
chr8 (470-558)||(43483947-43484040)
chr8 (470-510)||(44838789-44838829)
chr8 (477-558)||(34188340-34188426)
chr8 (473-558)||(40802235-40802325)
chr8 (470-558)||(37922844-37922937)
chr8 (470-558)||(39655432-39655525)
chr8 (470-510)||(1875703-1875743)
chr8 (470-510)||(9578453-9578493)
chr8 (470-510)||(34194575-34194615)
chr8 (470-510)||(40716761-40716801)
chr8 (470-510)||(41178043-41178083)
chr8 (470-510)||(42631794-42631834)
chr8 (468-510)||(13832021-13832063)
chr8 (477-514)||(29110286-29110323)
chr8 (477-510)||(29110348-29110381)
chr8 (470-507)||(32484956-32484993)
chr8 (477-510)||(35972393-35972426)
[»] chr7 (15 HSPs)
chr7 (470-558)||(11032318-11032411)
chr7 (470-510)||(3498309-3498349)
chr7 (470-510)||(25099551-25099591)
chr7 (448-510)||(27234943-27235002)
chr7 (470-510)||(45833275-45833315)
chr7 (470-510)||(46658817-46658857)
chr7 (467-510)||(9140233-9140276)
chr7 (471-510)||(27942341-27942380)
chr7 (472-510)||(46578282-46578320)
chr7 (470-567)||(7344922-7345016)
chr7 (477-510)||(27042185-27042218)
chr7 (473-510)||(31365653-31365690)
chr7 (470-558)||(33471505-33471598)
chr7 (447-510)||(35160744-35160804)
chr7 (470-558)||(48590617-48590710)
[»] chr5 (13 HSPs)
chr5 (448-510)||(27990442-27990501)
chr5 (474-558)||(6638283-6638372)
chr5 (470-510)||(20361992-20362032)
chr5 (470-510)||(23117563-23117603)
chr5 (470-510)||(24433550-24433590)
chr5 (470-510)||(29807093-29807133)
chr5 (470-510)||(39126099-39126139)
chr5 (470-510)||(39602989-39603029)
chr5 (471-558)||(40208493-40208585)
chr5 (470-507)||(25257159-25257196)
chr5 (470-507)||(25320949-25320986)
chr5 (470-507)||(29807164-29807201)
chr5 (470-558)||(34186370-34186463)
[»] chr6 (5 HSPs)
chr6 (477-514)||(8029438-8029475)
chr6 (470-558)||(32786131-32786224)
chr6 (470-510)||(13397431-13397471)
chr6 (470-558)||(7418890-7418983)
chr6 (470-558)||(9908168-9908261)
[»] scaffold0340 (1 HSPs)
scaffold0340 (471-510)||(14049-14088)
[»] scaffold0236 (1 HSPs)
scaffold0236 (447-510)||(13691-13750)
[»] scaffold0223 (1 HSPs)
scaffold0223 (470-507)||(26665-26702)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 44203793 - 44204114
Alignment:
Q  9 gtttgtgactatgctatgattataagagaatcataaggaggtttaaaggactccatcataaataggagtgattgaggtgccctgcctgtctcaaagaaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  44203793 gtttgtgactatgctatgattataagagaatcataaggaggtttaaaggactccatcataaataggaatgattgaggtgccctgcctgcctcaaagaaaa 44203892  T
Q  109 agacaggtaagttccaactttgaataaattaatcggggaacc-attcatgaaaagatcccttttgtggtgaagttttcaagttgtgtctcaatatgagcg 207  Q
    |||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44203893 agacaggtaaatcccaactttgaataaattaattggggatcccattcatgaaaagatcccttttgtggtgaagttttcaagttgtgtctcaatatgggcg 44203992  T
Q  208 aacggaatattaagaaatctctaattaatgcattgattaataccaattaattaattattataaaactcacaaaatggactatatgtggctcttttcaatg 307  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44203993 aacgaaatgttaagaaatctctaattaatgcattgattaataccaattaattaattattataaaactcacaaaatggactatatgtggctcttttcaatg 44204092  T
Q  308 catgaactaatctcttatttgg 329  Q
    ||||||||||||||||||||||    
T  44204093 catgaactaatctcttatttgg 44204114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 361 - 647
Target Start/End: Original strand, 44204123 - 44204420
Alignment:
Q  361 atcaagcagtacaatactataaatttannnnnnnaagtttaataaatgggtgtccgaggtttgaatcctaactctata------tatatgtaatactcca 454  Q
    |||||| ||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||      ||||||||||| ||||    
T  44204123 atcaagtagtacaatactataaatttatttttttaagattaataaatgggtgtccgaggtttgaatcctaactctatatatatatatatgtaatattcca 44204222  T
Q  455 tccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaata 549  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||     |||||||||||| |||||||||| ||||||| ||||    
T  44204223 tccgttgctaattagtataagcaaatttgactttttagattttttcaattaatgatgtatatggttcatattatggaccatatatattattaattgaata 44204322  T
Q  550 aacttaaaagttaaatttagttacaattgacaacgaagagagtacaatatatctatcaaatgagttaagctcacggagatcgttacattaaaatcaca 647  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||  ||||||||||||||| ||| ||||||||    
T  44204323 aacttaaaagttaaatttagttacaattgacaacgaaggaagtacaatatatctatcaattgagttaaattcacggagatcgttatattcaaatcaca 44204420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 27327955 - 27327862
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||||| ||||||| || ||||||||||||||     | ||||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  27327955 tataagcaaatttgattttttaggttcattcaattaatgatgtatctgattcatattatggaccacatacatcattaattgaatgaacctaaaa 27327862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 32473486 - 32473579
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| | |||||||||| |||||||||||||| ||     |||||| ||| | ||| |||||||||||||||||  |||||||||    
T  32473486 tataagcaaattttattttttagattcattcaattaatgatgtatgtggttcataatatagaccacatatatcattaattaaaagaacttaaaa 32473579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 38721508 - 38721415
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||| ||||||||||| ||| ||||||||||| |||||     |||||||||| | ||| ||| |||||||||| ||||||| |||||    
T  38721508 tataagcaaaattgactttttaaattcattcaattaataatttatgtggttcatattatagaccacatacatcattaattgaataaacctaaaa 38721415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 40739617 - 40739524
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||| ||||||| || |||||||||||||| ||     |||||||||||| ||| |||||||||||||| ||| ||| |||||    
T  40739617 tataagtaaatttgattttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatatatcattaattgaatgaacctaaaa 40739524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 33150090 - 33150130
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  33150090 tataagcaaattttactttttaggtttattcaattaatgat 33150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 37486124 - 37486040
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaata 549  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||||    
T  37486124 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaata 37486040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 42955158 - 42955118
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  42955158 tataagcaattttgacattttagatttattcaattaatgat 42955118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 15178148 - 15178086
Alignment:
Q  448 tactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||| ||||||  ||| |||||||||||||||| |  ||||| ||||||||||||||||||    
T  15178148 tactccctccgtttttaaatagtataagcaaattttaacttttaaatttattcaattaatgat 15178086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 510
Target Start/End: Complemental strand, 36490625 - 36490564
Alignment:
Q  446 aatactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||| |||| ||   ||||||||||| ||||||||| || ||||||||||||||    
T  36490625 aatactccatccgtttctaaata---taagcaaattttactttttaggttcattcaattaatgat 36490564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 507
Target Start/End: Original strand, 38532442 - 38532499
Alignment:
Q  447 atactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||||||||||| |||||||   |||||||| || |||||||||||| |||||||||||    
T  38532442 atactccatccgttactaatta---taagcaaaattaactttttagattgattcaattaat 38532499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 20128759 - 20128796
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  20128759 tataatcaaattttactttttagatttattcaattaat 20128796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 20195304 - 20195397
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||| |||||||||||| ||||||||||||||     | ||||||| ||||| ||| ||| |||||||||| ||| ||| |||||    
T  20195304 tataagtaaattttactttttagattcattcaattaatgatgtatgtgattcataatatggaccacatacatcattaattgaatgaacctaaaa 20195397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 32070476 - 32070569
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||| ||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  32070476 tataagtaaatttgattttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 32070569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 34240839 - 34240880
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatt 511  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  34240839 tataagcaaatttgacattttaggttcattcaattaatgatt 34240880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 42579144 - 42579051
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||| |||||||||||| |||||||||||||| ||     |||||| ||||| | | ||| |||||||||||||| || ||||||    
T  42579144 tataagtaaattttactttttagattcattcaattaatgatgtatgtggttcataatatggactacatacatcattaattaaatgaatttaaaa 42579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 448 - 514
Target Start/End: Original strand, 7002 - 7065
Alignment:
Q  448 tactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgatttat 514  Q
    ||||||||||||| |||||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  7002 tactccatccgttactaatta---taagcaaatttgactttttagattcattcaattaatgatttat 7065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 568
Target Start/End: Original strand, 32589330 - 32589433
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaagttaaa 564  Q
    |||||||||||||||||||||||||| |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||  ||||    
T  32589330 tataagcaaatttgactttttagattcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaaagtaaa 32589429  T
Q  565 ttta 568  Q
    ||||    
T  32589430 ttta 32589433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 508
Target Start/End: Original strand, 49562050 - 49562088
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatg 508  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  49562050 tataagcaaattttactttttagatttattcaattaatg 49562088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 515
Target Start/End: Complemental strand, 32814753 - 32814708
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatttatt 515  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||    
T  32814753 tataagcaaatttgactttttaggttcattcaattaatgatgtatt 32814708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 34935660 - 34935623
Alignment:
Q  473 aagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34935660 aagcaaattttactttttagatttattcaattaatgat 34935623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 51760184 - 51760277
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||| ||||||||||||| || ||||||||||||||     | ||||||||||||  ||| ||| |||||||||||||| ||| |||||    
T  51760184 tataagcaagtttgactttttaggttcattcaattaatgatgtatgtgattcatattatgaaccacatacatcattaattaaatgaacctaaaa 51760277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 54690563 - 54690526
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  54690563 tataagcaaatttgactttttaggtttattcaattaat 54690526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 7672818 - 7672774
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatttat 514  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||    
T  7672818 tataagaaaattttactttttagattcattcaattaatgatttat 7672774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 16894295 - 16894255
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  16894295 tataaacaaaattgactttttagatttattcaattaatgat 16894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 20821457 - 20821501
Alignment:
Q  471 ataagcaaatttgactttttagatttattcaattaatgatttatt 515  Q
    |||||||||||||||||||||| || |||||||||||||| ||||    
T  20821457 ataagcaaatttgactttttaggttcattcaattaatgatgtatt 20821501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 24600004 - 24599964
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  24600004 tataagcaaattttactttttaggtttattcaattaatgat 24599964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 29076650 - 29076610
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  29076650 tataagcaaaattgactttttagattcattcaattaatgat 29076610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 42595862 - 42595822
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  42595862 tataagcaaattttactttttagattcattcaattaatgat 42595822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 43898108 - 43898148
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  43898108 tataagcaaattttactttttagattcattcaattaatgat 43898148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 12569227 - 12569190
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  12569227 tataagcaaattttactttttagattcattcaattaat 12569190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 13545691 - 13545654
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  13545691 tataagcaaattttactttttagattcattcaattaat 13545654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 515
Target Start/End: Original strand, 23317031 - 23317076
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatttatt 515  Q
    |||||||||||||||||||||| | | |||||||||||||| ||||    
T  23317031 tataagcaaatttgactttttatagtcattcaattaatgatgtatt 23317076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 21909966 - 21909873
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||     |||||| ||||| ||| ||| |||||||||| ||||||| |||||    
T  21909966 tataagcaaattttactttttagatttattcaattaatgatgtatgtagttcataatatggaccacatacatcattaattgaataaacctaaaa 21909873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 48605195 - 48605102
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||||||||||||| || ||||||||||||||     | ||||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  48605195 tataagcaaatttgactttttaggttcattcaattaatgatgtatgtgattcatattatggaccacatacatcattaattgaatgaacctaaaa 48605102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 446 - 558
Target Start/End: Original strand, 50998298 - 50998412
Alignment:
Q  446 aatactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcatt 540  Q
    ||||||| ||||||||| |||||   ||||||||||||| ||||||| || |||||||||||||| ||     |||||||||||| | ||||| ||||||    
T  50998298 aatactctatccgttgccaatta---taagcaaatttgattttttaggttcattcaattaatgatgtatttggttcatattatggactatatacatcatt 50998394  T
Q  541 aattaaataaacttaaaa 558  Q
    |||| ||| ||| |||||    
T  50998395 aattgaatgaacctaaaa 50998412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 27549170 - 27549077
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||| ||||| ||| ||| |||||||||| ||| |||||||||    
T  27549170 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggttcataatatggaccacatacatcattaattgaatgaacttaaaa 27549077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 48376930 - 48376893
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||||||||||||||||||||||| |||||||||||    
T  48376930 tataagcaaatttgactttttagattcattcaattaat 48376893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 3160765 - 3160805
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  3160765 tataagcaaatttgactttttaggttcattcaattaatgat 3160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 3606276 - 3606316
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  3606276 tataagcaaaattgactttttagattcattcaattaatgat 3606316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 4682952 - 4682992
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  4682952 tataagcaaaattaactttttagatttattcaattaatgat 4682992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 12447469 - 12447509
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  12447469 tataagcaaatttgactttttaggtgtattcaattaatgat 12447509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 12993676 - 12993636
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  12993676 tataagcaaatttgactttttaggttcattcaattaatgat 12993636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 34598987 - 34598947
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  34598987 tataagtaaatttgactttttagattcattcaattaatgat 34598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 37255141 - 37255181
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  37255141 tataagcaaattttactttttagattcattcaattaatgat 37255181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 39181064 - 39181104
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  39181064 tataagcaaattttactttttagattcattcaattaatgat 39181104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 42140455 - 42140415
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  42140455 tataagcaaaattgactttttaggtttattcaattaatgat 42140415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 567
Target Start/End: Original strand, 28237094 - 28237189
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgatttat-----tcatattatggcccatatatatcattaattaaataaacttaaaagttaaattt 567  Q
    ||||||||||||||||||| |||  ||||||||| |||     ||||||||||| ||| ||| |||||||||| ||| ||| ||||| ||||||||    
T  28237094 aaatttgactttttagattcattttattaatgatgtatgtgggtcatattatggaccacatacatcattaattgaatgaacctaaaaattaaattt 28237189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 508
Target Start/End: Complemental strand, 3160875 - 3160837
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatg 508  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  3160875 tataagcaaatttgactttttaggttcattcaattaatg 3160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 508
Target Start/End: Complemental strand, 31634517 - 31634479
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatg 508  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  31634517 tataagcaaatttgactttttaggttaattcaattaatg 31634479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 15013672 - 15013709
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  15013672 tataagtaaatttgactttttagattcattcaattaat 15013709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 21852452 - 21852545
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||| |||||||||||| || |||||||||||||| ||     ||||||||||||  || ||| |||||||||| ||| ||| |||||    
T  21852452 tataagcaaaattgactttttaggttcattcaattaatgatatatgtggttcatattatggatcacatacatcattaattgaatgaacctaaaa 21852545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 33324170 - 33324133
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33324170 tataagcaaattttactttttaggtttattcaattaat 33324133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 39015558 - 39015618
Alignment:
Q  447 atactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||| |||||||| |||||   ||| ||||||||||||||||| || ||||||||||||||    
T  39015558 atactccctccgttgccaatta---taaacaaatttgactttttaggttcattcaattaatgat 39015618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 470 - 584
Target Start/End: Complemental strand, 58425 - 58305
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaactt-aaaagttaa 563  Q
    ||||||||||||||||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||| ||| ||| ||||| |||||||||    
T  58425 tataagcaaatttgactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattgattgaatgaacttaaaaagttaa 58326  T
Q  564 atttagttacaattgacaacg 584  Q
    ||||  ||| ||||| |||||    
T  58325 atttgcttataattggcaacg 58305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 544
Target Start/End: Complemental strand, 11583832 - 11583753
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaatt 544  Q
    |||||||||||||||||||||||||| |||||||||||||| ||     |||||||||||| ||| ||| ||||||||||    
T  11583832 tataagcaaatttgactttttagattcattcaattaatgatgtatgtagttcatattatggaccacatacatcattaatt 11583753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 16391300 - 16391207
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| ||||||||||||||||||||||| |||||||| | ||     |||||||||||| ||| ||| |||||||||| ||||||| |||||    
T  16391300 tataagtaaatttgactttttagatttattaaattaatgttgtatatagttcatattatggaccacatacatcattaattgaataaacgtaaaa 16391207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 26206609 - 26206702
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||     |||||| ||||| ||| ||| |||||||||||||| ||| |||||    
T  26206609 tataagtaaattttactttttagatttattcaattaatgatatatgtggttcataatatggaccacatacatcattaattaaatgaacctaaaa 26206702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 30162736 - 30162643
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| |||||||||    
T  30162736 tataagtaaatttgactttttaggttcattcaattaatgatatatgtggttcatattatggaccacatacatcattaattgaatgaacttaaaa 30162643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 44639871 - 44639778
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  44639871 tataagcaaatttcactttttagattcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 44639778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 556
Target Start/End: Complemental strand, 48042716 - 48042625
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaa 556  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||||||| | ||| ||| |||||||||||||| |||||||    
T  48042716 tataagcaaatttcactttttaggttcattcaattaatgatgtatgtagttcatattatagaccacatacatcattaattaaatgaacttaa 48042625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 39294298 - 39294205
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||  || |||||||||||||| ||     |||||||||||| ||| |||||||||||||| ||| ||| |||||    
T  39294298 tataagcaaatttaactttttaagttcattcaattaatgatgtatgcagttcatattatggaccacatatatcattaattgaatgaacctaaaa 39294205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 17659590 - 17659550
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  17659590 tataagcaaattttactttttagattcattcaattaatgat 17659550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 39754114 - 39754154
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  39754114 tataagcaaattttactttttaggtttattcaattaatgat 39754154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 50038465 - 50038505
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  50038465 tataagcaaattttactttttagattcattcaattaatgat 50038505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 50045687 - 50045727
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  50045687 tataagcaaattttactttttagattcattcaattaatgat 50045727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 50519387 - 50519347
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  50519387 tataagcaaatttgactttttaggttcattcaattaatgat 50519347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 45070850 - 45070932
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaat 548  Q
    |||||||||| || |||||| ||||||||| ||||||||||     ||||||||||||||| ||| ||| ||||||||||||||    
T  45070850 tataagcaaaattaactttt-agatttatttaattaatgatgtatgttattcatattatggaccacatacatcattaattaaat 45070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 507
Target Start/End: Complemental strand, 55131682 - 55131624
Alignment:
Q  446 aatactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||||||||||||| ||||||   ||||||||||| ||||||||| || |||||||||||    
T  55131682 aatactccatccgttgttaatta---taagcaaatttaactttttaggttcattcaattaat 55131624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 508
Target Start/End: Complemental strand, 16391799 - 16391761
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatg 508  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  16391799 tataagtaaatttgactttttaggtttattcaattaatg 16391761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 4711421 - 4711514
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatttat-----tcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||| |||| |||| ||||||  || ||||||||||||||||||     ||||||||||| ||| |||  ||||||||||||| |||||||||    
T  4711421 tataaacaaaattgattttttatgttcattcaattaatgatttatgtggttcatattatggaccacatacttcattaattaaatgaacttaaaa 4711514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 41789046 - 41788953
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||| ||||||  ||||||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  41789046 tataagtaaatttgattttttaagtttattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 41788953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 45890937 - 45891030
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| |||||||| ||||||| ||||||||||     | |||||||||| |  ||| ||| |||||||||||||| || ||||||    
T  45890937 tataagcaaattttactttttatatttattgaattaatgatgtatgtgattcatattacgaaccacatacatcattaattaaatgaagttaaaa 45891030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 46996599 - 46996506
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||| ||||||| ||||||||| || ||| |||||||||||||     |||||| ||||  ||| ||| |||||||||||||||||| |||||    
T  46996599 tataaacaaattttactttttaggttcatttaattaatgatttatgtagttcataatatgaaccacatacatcattaattaaataaacctaaaa 46996506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 53019281 - 53019221
Alignment:
Q  447 atactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||| ||||||||||||||   ||||||||||| ||||||||  || ||||||||||||||    
T  53019281 atactccctccgttgctaatta---taagcaaatttaactttttaagttcattcaattaatgat 53019221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 43483947 - 43484040
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  43483947 tataagcaaatttcactttttagattcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 43484040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 44838789 - 44838829
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  44838789 tataagcaaaattgactttttagatttattcaattaatgat 44838829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 34188340 - 34188426
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||||||||| || ||||||||||||||     ||||||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  34188340 aaatttgactttttaggttcattcaattaatgatgtatgttattcatattatggaccacatacatcattaattgaatgaacctaaaa 34188426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 558
Target Start/End: Complemental strand, 40802325 - 40802235
Alignment:
Q  473 aagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||| ||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| |||||||||    
T  40802325 aagcaaatttcactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacttaaaa 40802235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 37922937 - 37922844
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  37922937 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 37922844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 39655432 - 39655525
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||||||||||||| || |||||||||||||| ||     | |||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  39655432 tataagcaaatttgactttttaggttcattcaattaatgatgtatgtggtccatattatggaccacatacatcattaattgaatgaacataaaa 39655525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 1875703 - 1875743
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  1875703 tataagcaaatttgactttttaggttcattcaattaatgat 1875743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 9578453 - 9578493
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  9578453 tataagcaaattttactttttaggtttattcaattaatgat 9578493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 34194575 - 34194615
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  34194575 tataagcaaattttactttttagattcattcaattaatgat 34194615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 40716761 - 40716801
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  40716761 tataagcaaattttactttttagattcattcaattaatgat 40716801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 41178083 - 41178043
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  41178083 tataaacaaatttgactttttagattcattcaattaatgat 41178043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 42631794 - 42631834
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  42631794 tataagcaaattttactttttagattcattcaattaatgat 42631834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 13832021 - 13832063
Alignment:
Q  468 agtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||    
T  13832021 agtataaacaaatttgacttttttgattcattcaattaatgat 13832063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Original strand, 29110286 - 29110323
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgatttat 514  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  29110286 aaattttactttttaggtttattcaattaatgatttat 29110323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Complemental strand, 29110381 - 29110348
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgat 510  Q
    |||||| |||||||||||||||||||||||||||    
T  29110381 aaattttactttttagatttattcaattaatgat 29110348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 32484956 - 32484993
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  32484956 tataagcaaattttactttttagattcattcaattaat 32484993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Original strand, 35972393 - 35972426
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||| ||||||||||||||    
T  35972393 aaatttgactttttagattcattcaattaatgat 35972426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 11032318 - 11032411
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  11032318 tataagcaaatttgactttttatattcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 11032411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 3498309 - 3498349
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  3498309 tataagcaaattttactttttagattcattcaattaatgat 3498349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 25099551 - 25099591
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  25099551 tataagcaaaattgactttttagatttattcatttaatgat 25099591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 27235002 - 27234943
Alignment:
Q  448 tactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||| ||||||||||||||   |||| |||||||||||||||| || ||||||||||||||    
T  27235002 tactccctccgttgctaatta---taagtaaatttgactttttaggttcattcaattaatgat 27234943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 45833315 - 45833275
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  45833315 tataagcaaattttactttttagattcattcaattaatgat 45833275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 46658857 - 46658817
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  46658857 tataagcaaattttactttttagattcattcaattaatgat 46658817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 9140276 - 9140233
Alignment:
Q  467 tagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||    
T  9140276 tagtataagcaaaattgactttttagattcattcatttaatgat 9140233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 27942341 - 27942380
Alignment:
Q  471 ataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  27942341 ataagcaaattttactttttagattcattcaattaatgat 27942380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 46578282 - 46578320
Alignment:
Q  472 taagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  46578282 taagcaaatttgactttttaaattcattcaattaatgat 46578320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 567
Target Start/End: Original strand, 7344922 - 7345016
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgatttattcatattatggcccatatatatcattaattaaat-aaacttaaaagttaaattt 567  Q
    ||||||||||||| ||||||||| || |||||||||||||| |    ||| ||||| ||| ||| |||||||||| ||| ||||| |||||| ||||||    
T  7344922 tataagcaaatttaactttttaggttgattcaattaatgatgt----ataatatggaccacatacatcattaattgaatgaaactaaaaagtaaaattt 7345016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Complemental strand, 27042218 - 27042185
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||||||||| ||||||||||||||    
T  27042218 aaatttgactttttagattcattcaattaatgat 27042185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 31365690 - 31365653
Alignment:
Q  473 aagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  31365690 aagcaaattttactttctagatttattcaattaatgat 31365653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 33471505 - 33471598
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| | |||||||||| |||||||||||||| ||     |||||||||| | ||| ||| |||||||||| ||| ||| |||||    
T  33471505 tataagcaaattttattttttagattcattcaattaatgatgtatgtggttcatattatagaccacatacatcattaattgaatgaacctaaaa 33471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 35160744 - 35160804
Alignment:
Q  447 atactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||||| |||| ||   |||||||| |||||||||||| || ||||||||||||||    
T  35160744 atactccatccgtttctaaata---taagcaaaattgactttttaggttcattcaattaatgat 35160804  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 48590710 - 48590617
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||||||||||  || ||||||||||||||     | ||||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  48590710 tataagtaaatttgactttttaagttcattcaattaatgatgtatgtgattcatattatggaccacatacatcattaatttaatgaacctaaaa 48590617  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 27990501 - 27990442
Alignment:
Q  448 tactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||||||||||||   ||||||||||| ||||||||| || ||||||||||||||    
T  27990501 tactccatccgttgctaatta---taagcaaatttcactttttaggttcattcaattaatgat 27990442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 558
Target Start/End: Original strand, 6638283 - 6638372
Alignment:
Q  474 agcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||| ||||||||| || |||||||||||||| ||     |||||||||| | ||| |||||||||||||| ||| |||||||||    
T  6638283 agcaaattttactttttaggttcattcaattaatgatgtatacggttcatattattgaccacatatatcattaattgaatgaacttaaaa 6638372  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 20361992 - 20362032
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  20361992 tataagcaaattttactttttagattcattcaattaatgat 20362032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 23117603 - 23117563
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  23117603 tataagcaaaattgactttttagatttattcagttaatgat 23117563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 24433550 - 24433590
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  24433550 tataagcaaattttactttttagatttattgaattaatgat 24433590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 29807093 - 29807133
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  29807093 tataagcaaattttactttttagattcattcaattaatgat 29807133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 39126139 - 39126099
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  39126139 tataagcaaattttactttttagattcattcaattaatgat 39126099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 39603029 - 39602989
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  39603029 tataagcaaattttactttttaggtttattcaattaatgat 39602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 558
Target Start/End: Original strand, 40208493 - 40208585
Alignment:
Q  471 ataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||||||||| ||||||||  || ||||||||||||||     | |||||||||||   ||| |||||||||||||| |||||||||||||    
T  40208493 ataagcaaattttactttttaagttcattcaattaatgatatatgtgattcatattataaaccacatatatcattaattgaataaacttaaaa 40208585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 25257196 - 25257159
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  25257196 tataagtaaatttgactttttagattcattcaattaat 25257159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 25320986 - 25320949
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  25320986 tataagtaaatttgactttttagattcattcaattaat 25320949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 29807201 - 29807164
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  29807201 tataagcaaattttactttttagattcattcaattaat 29807164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 34186370 - 34186463
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||  ||||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  34186370 tataagcaaaaatgactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 34186463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 8029475 - 8029438
Alignment:
Q  477 aaatttgactttttagatttattcaattaatgatttat 514  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  8029475 aaatttgactttttagattcattcaattaatgatttat 8029438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 32786131 - 32786224
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||||||||| ||| ||| |||||||||| ||| ||| |||||    
T  32786131 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggttcatattatggaccacatacatcattaattgaatgaacctaaaa 32786224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 510
Target Start/End: Original strand, 13397431 - 13397471
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat 510  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  13397431 tataaacaaatttgattttttagatttattcaattaatgat 13397471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 7418890 - 7418983
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgattta-----ttcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||     |||||| ||| | ||| ||| |||||||||| ||| |||||||||    
T  7418890 tataagcaaattttactttttaggttcattcaattaatgatgtatgtggttcataatatagaccacatacatcattaatttaatgaacttaaaa 7418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Complemental strand, 9908261 - 9908168
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaatgat-----ttattcatattatggcccatatatatcattaattaaataaacttaaaa 558  Q
    |||||| |||||||||||||||| || ||||||||||||||     | ||||||||||||| ||| ||| |||||| ||| ||| ||| |||||    
T  9908261 tataagtaaatttgactttttaggttcattcaattaatgatgtatgtgattcatattatggaccacatacatcattgattgaatgaacctaaaa 9908168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 14049 - 14088
Alignment:
Q  471 ataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  14049 ataagcaaattttactttttagattcattcaattaatgat 14088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 13691 - 13750
Alignment:
Q  447 atactccatccgttgctaattagtataagcaaatttgactttttagatttattcaattaatgat 510  Q
    |||||||||||||| |||||    ||||| ||| ||||||||||||||| ||||||||||||||    
T  13691 atactccatccgtttctaat----ataagtaaaattgactttttagattcattcaattaatgat 13750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 26702 - 26665
Alignment:
Q  470 tataagcaaatttgactttttagatttattcaattaat 507  Q
    ||||||||||||||||||||||| || |||||||||||    
T  26702 tataagcaaatttgactttttaggttcattcaattaat 26665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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