View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5936-Insertion-7 (Length: 603)

Name: NF5936-Insertion-7
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5936-Insertion-7
NF5936-Insertion-7
[»] chr2 (5 HSPs)
chr2 (152-336)||(42196438-42196622)
chr2 (32-90)||(42196318-42196376)
chr2 (480-517)||(42196766-42196803)
chr2 (397-428)||(42196683-42196714)
chr2 (508-540)||(5077179-5077211)
[»] chr3 (2 HSPs)
chr3 (156-305)||(40686632-40686779)
chr3 (39-90)||(40686513-40686564)
[»] chr1 (2 HSPs)
chr1 (508-538)||(4795948-4795978)
chr1 (508-540)||(25659001-25659033)
[»] chr4 (1 HSPs)
chr4 (508-537)||(42308652-42308681)
[»] scaffold1844 (1 HSPs)
scaffold1844 (508-540)||(121-153)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 152 - 336
Target Start/End: Original strand, 42196438 - 42196622
Alignment:
Q  152 acacgttatgattggttgatattccaacgttgcgtaatgaacctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatn 251  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  42196438 acacgttatggttggttgatattccagcattgcgtaatgaatctgtgatggtttgcaagatatttttattttcccatctcataggatatatatttggata 42196537  T
Q  252 nnnnnnggatatattacattatagtatttcac-ttagttgttattattattattactactttgcaatcgtttaattgacgtaattc 336  Q
          | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42196538 aaaaaagaatatattacattatagtatttcactttagttgttattattattattactactttgcaatcg-ttaattgacgtaattc 42196622  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 42196318 - 42196376
Alignment:
Q  32 cttctctcgagaaagagtagagaaatgtcttactttatctttcttccagcaataccctt 90  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  42196318 cttctctcgagaaagagaagagaaatgtcttactttatcttttttccagcaataccctt 42196376  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 42196766 - 42196803
Alignment:
Q  480 ttttgtcatttcaaaaatcagacacacatctttctctt 517  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  42196766 ttttgtcatttcaaaaatcagacacacttctttctctt 42196803  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 428
Target Start/End: Original strand, 42196683 - 42196714
Alignment:
Q  397 gtggaatgtgaatttatttgaccttaatttaa 428  Q
    ||||||||||||||||||||||||||||||||    
T  42196683 gtggaatgtgaatttatttgaccttaatttaa 42196714  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 540
Target Start/End: Complemental strand, 5077211 - 5077179
Alignment:
Q  508 tctttctcttataccaaataatacatcaaattt 540  Q
    |||||||||||||||||| ||||||||||||||    
T  5077211 tctttctcttataccaaacaatacatcaaattt 5077179  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 40686632 - 40686779
Alignment:
Q  156 gttatgattggttgatattccaacgttgcgtaatgaacctgtgatggtttgcaagatatttttattttctcatctcataggatatatatttggatnnnnn 255  Q
    |||||| || |||||||||||| | |||||||||||||||||||||||||||||||| ||||  ||| | ||||| |||||||||||||||||||         
T  40686632 gttatggtttgttgatattccagcattgcgtaatgaacctgtgatggtttgcaagatctttt--tttccccatcttataggatatatatttggat-aaaa 40686728  T
Q  256 nnggatatattacattatagtatttcac-ttagttgttattattattatta 305  Q
      ||||||||||||| |||||||||||| || || ||||||||||||||||    
T  40686729 aaggatatattacatcatagtatttcactttggtggttattattattatta 40686779  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 40686513 - 40686564
Alignment:
Q  39 cgagaaagagtagagaaatgtcttactttatctttcttccagcaataccctt 90  Q
    |||||||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  40686513 cgagaaagaggagagaaatgccttactttatcttttttccaacaataccctt 40686564  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 538
Target Start/End: Complemental strand, 4795978 - 4795948
Alignment:
Q  508 tctttctcttataccaaataatacatcaaat 538  Q
    |||||||||||||||||||||||||||||||    
T  4795978 tctttctcttataccaaataatacatcaaat 4795948  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 540
Target Start/End: Complemental strand, 25659033 - 25659001
Alignment:
Q  508 tctttctcttataccaaataatacatcaaattt 540  Q
    |||||||||||||||||| ||||||||||||||    
T  25659033 tctttctcttataccaaacaatacatcaaattt 25659001  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 537
Target Start/End: Original strand, 42308652 - 42308681
Alignment:
Q  508 tctttctcttataccaaataatacatcaaa 537  Q
    ||||||||||||||||||||||||||||||    
T  42308652 tctttctcttataccaaataatacatcaaa 42308681  T

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Target: scaffold1844 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 540
Target Start/End: Original strand, 121 - 153
Alignment:
Q  508 tctttctcttataccaaataatacatcaaattt 540  Q
    ||||||| |||||||||||||||||||||||||    
T  121 tctttctattataccaaataatacatcaaattt 153  T

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