View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5936_high_10 (Length: 238)
Name: NF5936_high_10
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936_high_10 |
 | |
|
| [»] scaffold0038 (4 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28227437 - 28227217
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
28227437 |
aatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaa |
28227339 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28227338 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagccatct |
28227239 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
28227238 |
tccatttctgcaacctatccat |
28227217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 28185846 - 28185633
Alignment:
| Q |
12 |
gacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgac |
111 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| ||||| ||| ||||||| || |||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
28185846 |
gacatacaagtaacttacacttgttaagaataaaaagaatatattctatttaaaccgtaagatgaaacagtaagataatagaatattaaagagatatgac |
28185747 |
T |
|
| Q |
112 |
atatgtaagaatgtaaaacatgagtgaagtacggtacc---taggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28185746 |
atatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttc |
28185647 |
T |
|
| Q |
209 |
tgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28185646 |
tgcaacctctccat |
28185633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28325962 - 28325744
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| || || ||||||| | |||||||||||||| ||||| |
|
|
| T |
28325962 |
aatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggttagaaaatagaaaattaa |
28325863 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
|||| ||| ||||||||||| ||||||| ||| ||||| | |||| |||| |||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28325862 |
agaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatct |
28325766 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28325765 |
tccatttctgcaacctctccat |
28325744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28181602 - 28181381
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||| ||||||| ||||||| |||| ||||||||||||||||| ||||||| | |||| || | |||| |||||||| |||||||||| ||| | |
|
|
| T |
28181602 |
aatattgatttgacatacaagtaccttacacttgttaagaataaaattaatattacctatttcaactataagataaaacagttcgaaaatagaacattca |
28181503 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
|||| ||| || ||||| |||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28181502 |
agaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatct |
28181403 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
28181402 |
tccatttctgcaacctatccat |
28181381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 28297523 - 28297633
Alignment:
| Q |
112 |
atatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgc |
211 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28297523 |
atatttaagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgc |
28297622 |
T |
|
| Q |
212 |
aacctctccat |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
28297623 |
aacctctccat |
28297633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28514642 - 28514440
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||||||||||| | || |||||| |||||||||||||| ||||||||||||| ||||||| | | |||||||| ||| |||||||||||||| |
|
|
| T |
28514642 |
aatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggttggaaaatagaatatt-- |
28514546 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
28514545 |
----------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactct |
28514462 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28514461 |
tccatttctgcaacctctccat |
28514440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28243299 - 28243071
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||| || || ||||||| |||||||||||||| ||||| |
|
|
| T |
28243299 |
aatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgtaagatgaattggttagaaaatagaaaattaa |
28243201 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaa--------aacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaag |
192 |
Q |
| |
|
|||| | || |||||||| |||||| ||||||||| |||| |||||||| | |||| |||| ||||||||||||||| |||||||| || |
|
|
| T |
28243200 |
agaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttag |
28243101 |
T |
|
| Q |
193 |
agccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
28243100 |
agcactcttccatttctgcaacctctccat |
28243071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 28234900 - 28234830
Alignment:
| Q |
152 |
ggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28234900 |
ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat |
28234830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 27337924 - 27337985
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||| ||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
27337924 |
tggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccat |
27337985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 27398664 - 27398725
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||| ||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
27398664 |
tggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccat |
27398725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 28098188 - 28098273
Alignment:
| Q |
133 |
gagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctct |
218 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||| || |||||||| | ||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
28098188 |
gagtgaagtatggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcagcctct |
28098273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28297431 - 28297527
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatatt |
98 |
Q |
| |
|
||||||||||||||| | || |||||| |||||||||||||| ||||||||||||| ||||||| | | |||||||| ||| |||||||||||||| |
|
|
| T |
28297431 |
aatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggttggaaaatagaatatt |
28297527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 27214745 - 27214687
Alignment:
| Q |
164 |
tagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
27214745 |
tagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccat |
27214687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 27234483 - 27234541
Alignment:
| Q |
164 |
tagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
27234483 |
tagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccat |
27234541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 31284616 - 31284555
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
31284616 |
tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat |
31284555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 26056251 - 26056209
Alignment:
| Q |
164 |
tagccagagaagttagcagtttgagtaagagccatcttccatt |
206 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
26056251 |
tagccggacaagttagcagcttgagtaagagccatcttccatt |
26056209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 26076221 - 26076179
Alignment:
| Q |
164 |
tagccagagaagttagcagtttgagtaagagccatcttccatt |
206 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
26076221 |
tagccggacaagttagcagcttgagtaagagccatcttccatt |
26076179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26636035 - 26635957
Alignment:
| Q |
144 |
ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||| | ||||||| |||| |||||| |||||||||| ||| ||||||| ||||||||||| |||||| |||||| |
|
|
| T |
26636035 |
ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccat |
26635957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26742001 - 26741923
Alignment:
| Q |
144 |
ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||| | ||||||| |||| |||||| |||||||||| ||| ||||||| ||||||||||| |||||| |||||| |
|
|
| T |
26742001 |
ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccat |
26741923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26959511 - 26959433
Alignment:
| Q |
144 |
ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||| | ||||||| |||| |||||| |||||||||| ||| ||||||| ||||||||||| |||||| |||||| |
|
|
| T |
26959511 |
ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccat |
26959433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 26937442 - 26937373
Alignment:
| Q |
153 |
gattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
||||||| |||| |||||| ||||| || | ||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26937442 |
gattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat |
26937373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28781467 - 28781406
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
28781467 |
tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat |
28781406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28786606 - 28786545
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
28786606 |
tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat |
28786545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28792727 - 28792666
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
28792727 |
tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat |
28792666 |
T |
|
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Target: scaffold0038 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27935 - 27715
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
27935 |
aatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaa |
27837 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
27836 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatct |
27737 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
27736 |
tccatttctgcaacctatccat |
27715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 117277 - 117059
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| || || ||||||| | |||||||||||||| ||||| |
|
|
| T |
117277 |
aatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggttagaaaatagaaaattaa |
117178 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct |
200 |
Q |
| |
|
|||| ||| ||||||||||| ||||||| ||| ||||| | |||| |||| |||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
117177 |
agaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatct |
117081 |
T |
|
| Q |
201 |
tccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
117080 |
tccatttctgcaacctctccat |
117059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43461 - 43233
Alignment:
| Q |
1 |
aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa |
100 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||| || || ||||||| |||||||||||||| ||||| |
|
|
| T |
43461 |
aatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgtaagatgaattggttagaaaatagaaaattaa |
43363 |
T |
|
| Q |
101 |
agaagtatgacatatgtaagaatgtaa--------aacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaag |
192 |
Q |
| |
|
|||| | || |||||||| |||||| ||||||||| |||| |||||||| | |||| |||| ||||||||||||||| |||||||| || |
|
|
| T |
43362 |
agaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttag |
43263 |
T |
|
| Q |
193 |
agccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
43262 |
agcactcttccatttctgcaacctctccat |
43233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 35062 - 34992
Alignment:
| Q |
152 |
ggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35062 |
ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat |
34992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 58005 - 58199
Alignment:
| Q |
24 |
acttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaat |
123 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||| ||||||| | | ||||||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
58005 |
acttacacttgttaagaataaaaatatt-ttttctatttaaactttaatatgaaacggttataaaatagaatattaaagagatatgacatatgtaagaat |
58103 |
T |
|
| Q |
124 |
gtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctc |
219 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
58104 |
gtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctc |
58199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 5090792 - 5090868
Alignment:
| Q |
146 |
tacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
||||||| |||||| ||||||||||| || ||||| | ||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5090792 |
tacctagcattgaaatggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccat |
5090868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 3280048 - 3279974
Alignment:
| Q |
144 |
ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctct |
218 |
Q |
| |
|
||||||||||||| || |||| ||| || |||||||| | ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3280048 |
ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctct |
3279974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 4530 - 4591
Alignment:
| Q |
161 |
tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||||| |||||||| |||||||||||||| |
|
|
| T |
4530 |
tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat |
4591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 16689359 - 16689290
Alignment:
| Q |
153 |
gattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat |
222 |
Q |
| |
|
||||||| || || || |||| |||||||| |||| |||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
16689359 |
gattgaaatgataaccggagaggttagcagcttgattaagagccgtcttccatttctgcagcctatccat |
16689290 |
T |
|
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