View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936_high_5 (Length: 296)
Name: NF5936_high_5
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 32569452 - 32569716
Alignment:
| Q |
20 |
cataaaaggcttgcttccacttctagcgccacctctactagttctgattggatgtcttcagcctctactttatctcagggtatgatccaatgtacatgga |
119 |
Q |
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| T |
32569452 |
cataaaaggcttgcttccacttctagcgccacctctactagttctgattggatgtcttcaacctctactttatctcagggtatgatccaatgtacatgga |
32569551 |
T |
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| Q |
120 |
agcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaacagatgataaggcttt |
219 |
Q |
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| T |
32569552 |
agcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaacagatgataaggcttt |
32569651 |
T |
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| Q |
220 |
tgactatgtgtatcagtttcacttaaacaagggaagtcagaagggtcgtgagattgctgatgatg |
284 |
Q |
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| T |
32569652 |
tgactatgtgtatcagtttcacttaaacaagggaagtcagaagggtcgtgagattgctgatgatg |
32569716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 32614418 - 32614559
Alignment:
| Q |
104 |
atccaatgtacatggaagcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaa |
203 |
Q |
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| T |
32614418 |
atccaatgtacatggaag-gagggtttcctcatttaattttttctgagcacgatcagaaagaggtttacatagcaaagttgaggaagatattagactcga |
32614516 |
T |
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| Q |
204 |
cagatgataaggcttttgactatgtgtatcagtttcacttaaaca |
248 |
Q |
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| T |
32614517 |
catatgataaggttttggac--tgtgtatcagcttcacttaaaca |
32614559 |
T |
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