View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936_low_1 (Length: 540)
Name: NF5936_low_1
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 14 - 527
Target Start/End: Complemental strand, 32570245 - 32569732
Alignment:
| Q |
14 |
atcagactagacggaccaccatttctggttctaggtccaccatgaaggcctgctggaatcagaatgctcatactcgatgagcagtcatcgttattttgat |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32570245 |
atcagactagacggaccaccatttctggttctaggcccaccatggaggcctgctggaatcagaatgctcatactcgatgagcagtcatcgttattttgat |
32570146 |
T |
|
| Q |
114 |
tacaactttcagaaggcgatgcggttttgtttacgccagatttgttgagaaattttaagccccaacctcctattttttccggcctattacaaggaagatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32570145 |
tacaactttcagaaggcgatgcggttttgtttacgccagatttgttgagaaattttaagccccaacctcctattttttccggcctattacaaggaagatg |
32570046 |
T |
|
| Q |
214 |
gtctttaacaacaatggaagccatctcaaaatttggaggaacattagcatctaataaatcaatttgtggatcccacggacaactctcagctacggcacca |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32570045 |
gtctttaacaacaatggaagccatctcaaaattcggaggaacattagcatctaataaatcaatttgtggatcccacagacaactctcagctacggcacca |
32569946 |
T |
|
| Q |
314 |
gatctgttaaaccttgagagtgttctgtgttttgatgaaggattagttctgaaaacttgcgacacctttttctttagccccttgttcttcatgtgatgag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32569945 |
gatctgttaaaccttgagagtgttctgtgttttgatgaaggattggttctgaaaacttgtgacacctttttctttagccccttgttcttcatgtgatgag |
32569846 |
T |
|
| Q |
414 |
aatactctgatctgttgtcataaacttcaatgttattgaataatgtgaactcggtctccattactctacaactattcgagcaaagagtgaaactcgttga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
32569845 |
aatactctgatctgttgtcataaacttcaatgttatggaataatgtgaactcggtctccattactcgacagctattcgagcaaagagtgaaactcgttga |
32569746 |
T |
|
| Q |
514 |
tacattcatcttcc |
527 |
Q |
| |
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|||||||||||||| |
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| T |
32569745 |
tacattcatcttcc |
32569732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 32614890 - 32614688
Alignment:
| Q |
14 |
atcagactagacggaccaccatttctggttctaggtccaccatgaaggcctgctggaa-tcagaatgctcatactcgatgagcagtcatcgttattttga |
112 |
Q |
| |
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|||||||||||||| ||| |||||||| |||| | |||||||||| |||| |||||| |||||||||||||||||||||||||| |||| |||| |||| |
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| T |
32614890 |
atcagactagacgggacacaatttctggctctaagcccaccatgaacgcct-ctggaaatcagaatgctcatactcgatgagcaggcatcattatattga |
32614792 |
T |
|
| Q |
113 |
ttacaactttcagaaggcgatgcggttttgtttacgccagatttgttgagaaattttaagccccaacctcctatt-ttttccggcctattacaaggaaga |
211 |
Q |
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||||||| |||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||| | |||||||| ||||| | ||||||| |||||| | |
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| T |
32614791 |
ttacaacattcagaaggcgatgtggttttatttacaccagatttgtttagaaattttaagcccctatctcctatttttttctgtcctattaaaaggaata |
32614692 |
T |
|
| Q |
212 |
tggt |
215 |
Q |
| |
|
|||| |
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|
| T |
32614691 |
tggt |
32614688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 32614683 - 32614610
Alignment:
| Q |
454 |
taatgtgaactcggtctccattactctacaactattcgagcaaagagtgaaactcgttgatacattcatcttcc |
527 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32614683 |
taatgtgaactctgtctccattactcgacaactattcgagcaaaaagtgaaactcgttgatacattcatcttcc |
32614610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 32595008 - 32594933
Alignment:
| Q |
154 |
tttgttgagaaattttaagccccaacctcctattttttccggcctattacaaggaagatggtctttaacaacaatg |
229 |
Q |
| |
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|||||||||||||| ||| || || |||||||||||||| | ||||||||||||||||||||||| ||||||||| |
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|
| T |
32595008 |
tttgttgagaaattctaatccacagcctcctattttttctagtctattacaaggaagatggtcttttacaacaatg |
32594933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 16926871 - 16926766
Alignment:
| Q |
153 |
atttgttgagaaattttaagccccaacctcctattttttccggcctattacaaggaagatggtctttaacaacaatggaagccatctcaaaatttggagg |
252 |
Q |
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||||||||||||||||| | ||||||||||||| |||||| | | |||| | |||| ||| ||||| |||||||| | | | | ||||||||||| || |
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| T |
16926871 |
atttgttgagaaattttgatccccaacctcctactttttcaagacaattaaatggaacatgttctttgacaacaatagcaccaacctcaaaatttgttgg |
16926772 |
T |
|
| Q |
253 |
aacatt |
258 |
Q |
| |
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|||||| |
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|
| T |
16926771 |
aacatt |
16926766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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