View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5936_low_12 (Length: 238)

Name: NF5936_low_12
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5936_low_12
NF5936_low_12
[»] chr6 (24 HSPs)
chr6 (1-222)||(28227217-28227437)
chr6 (12-222)||(28185633-28185846)
chr6 (1-222)||(28325744-28325962)
chr6 (1-222)||(28181381-28181602)
chr6 (112-222)||(28297523-28297633)
chr6 (1-222)||(28514440-28514642)
chr6 (1-222)||(28243071-28243299)
chr6 (152-222)||(28234830-28234900)
chr6 (161-222)||(27337924-27337985)
chr6 (161-222)||(27398664-27398725)
chr6 (133-218)||(28098188-28098273)
chr6 (1-98)||(28297431-28297527)
chr6 (164-222)||(27214687-27214745)
chr6 (164-222)||(27234483-27234541)
chr6 (161-222)||(31284555-31284616)
chr6 (164-206)||(26056209-26056251)
chr6 (164-206)||(26076179-26076221)
chr6 (144-222)||(26635957-26636035)
chr6 (144-222)||(26741923-26742001)
chr6 (144-222)||(26959433-26959511)
chr6 (153-222)||(26937373-26937442)
chr6 (161-222)||(28781406-28781467)
chr6 (161-222)||(28786545-28786606)
chr6 (161-222)||(28792666-28792727)
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-222)||(27715-27935)
scaffold0038 (1-222)||(117059-117277)
scaffold0038 (1-222)||(43233-43461)
scaffold0038 (152-222)||(34992-35062)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-219)||(58005-58199)
[»] chr4 (1 HSPs)
chr4 (146-222)||(5090792-5090868)
[»] chr2 (1 HSPs)
chr2 (144-218)||(3279974-3280048)
[»] scaffold0277 (1 HSPs)
scaffold0277 (161-222)||(4530-4591)
[»] chr5 (1 HSPs)
chr5 (153-222)||(16689290-16689359)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28227437 - 28227217
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28227437 aatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaa 28227339  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  28227338 agaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagccatct 28227239  T
Q  201 tccatttctgcaacctctccat 222  Q
    |||||||||||||||| |||||    
T  28227238 tccatttctgcaacctatccat 28227217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 28185846 - 28185633
Alignment:
Q  12 gacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgac 111  Q
    |||| |||||||||||| |||||||||||||||||| ||||| ||| |||||||  || |||||||||||| ||| ||||||||||||||||  ||||||    
T  28185846 gacatacaagtaacttacacttgttaagaataaaaagaatatattctatttaaaccgtaagatgaaacagtaagataatagaatattaaagagatatgac 28185747  T
Q  112 atatgtaagaatgtaaaacatgagtgaagtacggtacc---taggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttc 208  Q
    ||||||||||||||||||||||||||||||  ||||||    ||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||    
T  28185746 atatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttc 28185647  T
Q  209 tgcaacctctccat 222  Q
    ||||||||||||||    
T  28185646 tgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28325962 - 28325744
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| ||  || ||||||| | |||||||||||||| |||||    
T  28325962 aatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggttagaaaatagaaaattaa 28325863  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
    |||| |||   |||||||||||   ||||||| ||| ||||| | |||| |||| |||| |||| ||| |||||||||||||||||||||||||||||||    
T  28325862 agaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatct 28325766  T
Q  201 tccatttctgcaacctctccat 222  Q
    ||||||||||||||||||||||    
T  28325765 tccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28181602 - 28181381
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||| |||||||  | |||| ||   | |||| |||||||| |||||||||| ||| |    
T  28181602 aatattgatttgacatacaagtaccttacacttgttaagaataaaattaatattacctatttcaactataagataaaacagttcgaaaatagaacattca 28181503  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
    |||| ||| || |||||  |||||||||||||||||| | ||||||||||||||||||  |||| |||||||||||||||||||||||||||||| ||||    
T  28181502 agaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatct 28181403  T
Q  201 tccatttctgcaacctctccat 222  Q
    |||||||||||||||| |||||    
T  28181402 tccatttctgcaacctatccat 28181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 28297523 - 28297633
Alignment:
Q  112 atatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgc 211  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  28297523 atatttaagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgc 28297622  T
Q  212 aacctctccat 222  Q
    |||||||||||    
T  28297623 aacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28514642 - 28514440
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||||||||||| | || ||||||  |||||||||||||| ||||||||||||| ||||||| | |  |||||||| ||| ||||||||||||||      
T  28514642 aatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggttggaaaatagaatatt-- 28514546  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
                    |||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||    
T  28514545 ----------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactct 28514462  T
Q  201 tccatttctgcaacctctccat 222  Q
    ||||||||||||||||||||||    
T  28514461 tccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28243299 - 28243071
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    |||||||||||| || |||||||||||| ||||||||||||||||  |||||||||| |||| ||  || |||||||   |||||||||||||| |||||    
T  28243299 aatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgtaagatgaattggttagaaaatagaaaattaa 28243201  T
Q  101 agaagtatgacatatgtaagaatgtaa--------aacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaag 192  Q
    |||| | ||  ||||||||  ||||||        ||||||||| ||||   |||||||| | |||| |||| ||||||||||||||| |||||||| ||    
T  28243200 agaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttag 28243101  T
Q  193 agccatcttccatttctgcaacctctccat 222  Q
    |||  |||||||||||||||||||||||||    
T  28243100 agcactcttccatttctgcaacctctccat 28243071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 28234900 - 28234830
Alignment:
Q  152 ggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| |||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  28234900 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 27337924 - 27337985
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||| ||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  27337924 tggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccat 27337985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 27398664 - 27398725
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||| ||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  27398664 tggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccat 27398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 28098188 - 28098273
Alignment:
Q  133 gagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctct 218  Q
    |||||||||| |||||||||||||||| |||| ||| || |||||||| | |||  ||||||||||||||||||| |||| |||||    
T  28098188 gagtgaagtatggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcagcctct 28098273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28297431 - 28297527
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatatt 98  Q
    ||||||||||||||| | || ||||||  |||||||||||||| ||||||||||||| ||||||| | |  |||||||| ||| ||||||||||||||    
T  28297431 aatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacggttggaaaatagaatatt 28297527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 27214745 - 27214687
Alignment:
Q  164 tagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| |||||||||| |||  ||||||| ||||||||||||||||||| ||||||    
T  27214745 tagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccat 27214687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 27234483 - 27234541
Alignment:
Q  164 tagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| |||||||||| |||  ||||||| ||||||||||||||||||| ||||||    
T  27234483 tagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccat 27234541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 31284616 - 31284555
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  31284616 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 31284555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 26056251 - 26056209
Alignment:
Q  164 tagccagagaagttagcagtttgagtaagagccatcttccatt 206  Q
    ||||| || |||||||||| |||||||||||||||||||||||    
T  26056251 tagccggacaagttagcagcttgagtaagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 26076221 - 26076179
Alignment:
Q  164 tagccagagaagttagcagtttgagtaagagccatcttccatt 206  Q
    ||||| || |||||||||| |||||||||||||||||||||||    
T  26076221 tagccggacaagttagcagcttgagtaagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26636035 - 26635957
Alignment:
Q  144 ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||| | ||||||| |||| |||||| |||||||||| |||  |||||||  ||||||||||| |||||| ||||||    
T  26636035 ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccat 26635957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26742001 - 26741923
Alignment:
Q  144 ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||| | ||||||| |||| |||||| |||||||||| |||  |||||||  ||||||||||| |||||| ||||||    
T  26742001 ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccat 26741923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26959511 - 26959433
Alignment:
Q  144 ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||| | ||||||| |||| |||||| |||||||||| |||  |||||||  ||||||||||| |||||| ||||||    
T  26959511 ggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccat 26959433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 26937442 - 26937373
Alignment:
Q  153 gattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    ||||||| |||| |||||| ||||| || | |||  ||||||| |||||||||||| |||||||||||||    
T  26937442 gattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28781467 - 28781406
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| || |||||||||| ||| || ||||||| ||||||||  ||||||||||||||    
T  28781467 tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat 28781406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28786606 - 28786545
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| || |||||||||| ||| || ||||||| ||||||||  ||||||||||||||    
T  28786606 tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat 28786545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 28792727 - 28792666
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| || |||||||||| ||| || ||||||| ||||||||  ||||||||||||||    
T  28792727 tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat 28792666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27935 - 27715
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27935 aatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataatattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaa 27837  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||| ||||    
T  27836 agaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatct 27737  T
Q  201 tccatttctgcaacctctccat 222  Q
    |||||||||||||||| |||||    
T  27736 tccatttctgcaacctatccat 27715  T

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Target: scaffold0038; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 117277 - 117059
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| ||  || ||||||| | |||||||||||||| |||||    
T  117277 aatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcggttagaaaatagaaaattaa 117178  T
Q  101 agaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatct 200  Q
    |||| |||   |||||||||||   ||||||| ||| ||||| | |||| |||| |||| |||| ||| |||||||||||||||||||||||||||||||    
T  117177 agaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatct 117081  T
Q  201 tccatttctgcaacctctccat 222  Q
    ||||||||||||||||||||||    
T  117080 tccatttctgcaacctctccat 117059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43461 - 43233
Alignment:
Q  1 aatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaa 100  Q
    |||||||||||| || |||||||||||| ||||||||||||||||  |||||||||| |||| ||  || |||||||   |||||||||||||| |||||    
T  43461 aatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgtaagatgaattggttagaaaatagaaaattaa 43363  T
Q  101 agaagtatgacatatgtaagaatgtaa--------aacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaag 192  Q
    |||| | ||  ||||||||  ||||||        ||||||||| ||||   |||||||| | |||| |||| ||||||||||||||| |||||||| ||    
T  43362 agaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttag 43263  T
Q  193 agccatcttccatttctgcaacctctccat 222  Q
    |||  |||||||||||||||||||||||||    
T  43262 agcactcttccatttctgcaacctctccat 43233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 35062 - 34992
Alignment:
Q  152 ggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| |||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  35062 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 58005 - 58199
Alignment:
Q  24 acttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaat 123  Q
    ||||| |||||||||||||||||||| | ||||| |||||||   | | ||||||| |||| ||||||||||||||||||  ||||||||||||||||||    
T  58005 acttacacttgttaagaataaaaatatt-ttttctatttaaactttaatatgaaacggttataaaatagaatattaaagagatatgacatatgtaagaat 58103  T
Q  124 gtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctc 219  Q
    ||||||||||||| ||||  ||||||||| |||||| |||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  58104 gtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctc 58199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 5090792 - 5090868
Alignment:
Q  146 tacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    ||||||| |||||| ||||||||||| || ||||| | |||  |||||||||||| ||||||||||||| |||||||    
T  5090792 tacctagcattgaaatggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccat 5090868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 3280048 - 3279974
Alignment:
Q  144 ggtacctaggattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctct 218  Q
    ||||||||||||| || |||| ||| || |||||||| | |||  ||||||||||||||||||| ||||||||||    
T  3280048 ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctct 3279974  T

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Target: scaffold0277 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 4530 - 4591
Alignment:
Q  161 tggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    |||||||| || |||||||||| ||| || ||||||| ||||||||  ||||||||||||||    
T  4530 tggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccat 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 16689359 - 16689290
Alignment:
Q  153 gattgaagtggtagccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 222  Q
    ||||||| || || || |||| |||||||| |||| |||||||| ||||||||||||||| ||| |||||    
T  16689359 gattgaaatgataaccggagaggttagcagcttgattaagagccgtcttccatttctgcagcctatccat 16689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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