View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5936_low_2 (Length: 377)
Name: NF5936_low_2
Description: NF5936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5936_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 55017189 - 55017541
Alignment:
| Q |
18 |
gcttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttc |
117 |
Q |
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| T |
55017189 |
gcttttaggtggttgccggttccaaattccccacccgacccaacagagacatttgctttcactgttgttatgaagaatcctctcaaggcagttattgttc |
55017288 |
T |
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| Q |
118 |
ctagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatactacaatgctagtaatttgttaactaaatta |
217 |
Q |
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| T |
55017289 |
ctagatcaatttaagttgttacacttacaaatactttatcatttacatggtattattttcttttgcatattgcaatgctagtaatttgttaactaaatta |
55017388 |
T |
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| Q |
218 |
agagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttcattttggtggtgattaatattgctggtttaaatgtataata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55017389 |
agagtatttagtactccataagactggtaattcaggggtttgttcattgtttatttttctttttggtggtgattaatattgctggtttaaatgtataata |
55017488 |
T |
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| Q |
318 |
ctagtatcaaattattaatttttgtttatgtaacaagattccatgtgtctgtg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55017489 |
ctagtatcaaattattaatttttgtttatgtaacaagattccatgtgtgtgtg |
55017541 |
T |
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