View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5937-Insertion-1 (Length: 960)
Name: NF5937-Insertion-1
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5937-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 808; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 9 - 953
Target Start/End: Original strand, 46819125 - 46820080
Alignment:
| Q |
9 |
tcaactacgatcaacccagagttaaatattacatcttcattaggtgcagctgatagttgcgggtnnnnnnngaaattgtcaatgttcttcaataccaaaa |
108 |
Q |
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| T |
46819125 |
tcaactacgatcaacccagagttaaatattacatcttcattaggtgcagctgatagttgcgggtaaaaaaagaaattgtcaatgttcttcaataccaaaa |
46819224 |
T |
|
| Q |
109 |
aatcagaatctatgaagatgattttatcatacatagtgagttgccaaatacgcagcttgctatagttccatcgattatatgcatcttttttggcaaaggg |
208 |
Q |
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| T |
46819225 |
aatcagaatctatgaagatgattttatcatacatagtgagttgccaaatacgcagcttgctatagttccatcgattatatgcatcttttttggcaaaggg |
46819324 |
T |
|
| Q |
209 |
actttcgatacgttgaatgcgtttgattttccatcctgcagctcttaaacccttcatggatttggggcctattgaatcatcagccaggagaacaagatct |
308 |
Q |
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| T |
46819325 |
actttcgatacgttgaatgcgtttgattttccatcctgcagctcttaaacccttcatggatttggggcctattgaatcatcagccaggagaacaagatct |
46819424 |
T |
|
| Q |
309 |
atgggttgaaatatgtaactgtttttgccagttaataatatgctttgggcaggagctattgcaccgcaaacatatgcttctgaagagtgaagaacagtta |
408 |
Q |
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| T |
46819425 |
atgggttgaaatatgtaactgtttttgccagttaataatatgctttgggcaagagctattgcaccgcaaacatatgcttctgaagagtgaagaactgtta |
46819524 |
T |
|
| Q |
409 |
cataggctaactttggagctttcttgttatgctttgataatgatgacaaataactcctccatatctctttacctacaattataaaattactagatggatt |
508 |
Q |
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| T |
46819525 |
cataggctaactttggagctttcttgttatgctttgataatgatgacaaataactcctccatatctctttacctacaattataaaattactagatggatt |
46819624 |
T |
|
| Q |
509 |
tcaactattctcaaatatcaatcttacgaattaattgctttacataattacaaa----------tatatcagtgatgtcgtggttattttcaagttcaac |
598 |
Q |
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| T |
46819625 |
tcaactattctcaaatatcaatcttacgaattaattgctttacataattacaaatttaccaaactatatcagtgatgtcgtggttattttcaagtttaac |
46819724 |
T |
|
| Q |
599 |
aaaaaagtataacatggattattcatagtccagcatatcaattgatggctagtcaaaagattaactatcagaaaggaatgtgcatggattttgaaatttt |
698 |
Q |
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| T |
46819725 |
aaaaaagtataacatggattattcatagtcaagcatatcaattg-tggctagtcaaaagattaactatcagaaaggaatgtgcattgattttgaaatttt |
46819823 |
T |
|
| Q |
699 |
tagaaggaaaatcataacttannnnnnnccttcaaaacatacgaaccatatcgtatactattattgattgtaaaaattacaaattaaagtgcataaggaa |
798 |
Q |
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| T |
46819824 |
tagaaggagaatcataacttatttttttccttcaaaacatacgaaccatatcgtatactattattgattgtaaaaattacaaattaaagtgcataaggaa |
46819923 |
T |
|
| Q |
799 |
tcctctacaactaacttttatggtgcaatcaatcagacattattaaattaagagatagtttgattc-agtttaataaagtgtacctgattctgcct-acc |
896 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
46819924 |
tcctctacaactaacttttatggtgcaatcaatcagacattattaaattaagagataatttgattcaagtttaataaagtgtacctgattctgcataacc |
46820023 |
T |
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| Q |
897 |
agaagaaattaggcatgaaccaaccggcattacggttttttgctttagtctattcaa |
953 |
Q |
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|| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
46820024 |
aggagaaatttggcatgaaccaaccggcattagggttttttgcttaagtctattcaa |
46820080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 110 - 298
Target Start/End: Complemental strand, 36882412 - 36882224
Alignment:
| Q |
110 |
atcagaatctatgaagatgattttatcatacatagtgagttgccaaatacgcagcttgctatagttcca-tcgattatatgcatcttttttggcaaaggg |
208 |
Q |
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||||||||||| |||||||||||| |||||||| ||||||||||| || || ||||| ||||||||||| ||| ||||||| | ||||||| ||||| || |
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| T |
36882412 |
atcagaatctaggaagatgattttgtcatacattgtgagttgccatattcgtagcttactatagttccactcg-ttatatgtaccttttttcgcaaatgg |
36882314 |
T |
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| Q |
209 |
actttcgatacgttgaatgcgtttgattttccatcctgcagctcttaaacccttcatggatttggggcctattgaatcatcagccaggag |
298 |
Q |
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| T |
36882313 |
atttaagatacgttgaatgtgtttgatcttccatcctgcggattttagaccctttatggactcgtggccaattgagtcatcggcaaggag |
36882224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 36882180 - 36882111
Alignment:
| Q |
348 |
atgctttgggcaggagctattgcaccgcaaacatatgcttctgaagagtgaagaacagttacataggcta |
417 |
Q |
| |
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|||||||| || |||||||||| ||||||||||| |||||||| |||||||| || || ||||| |||| |
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| T |
36882180 |
atgctttgtgctagagctattgcgccgcaaacataagcttctgatgagtgaaggactgtcacataagcta |
36882111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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