View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5937-Insertion-3 (Length: 926)

Name: NF5937-Insertion-3
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5937-Insertion-3
NF5937-Insertion-3
[»] chr6 (6 HSPs)
chr6 (301-791)||(29601599-29602089)
chr6 (8-236)||(29601380-29601602)
chr6 (794-859)||(16805448-16805514)
chr6 (809-859)||(12791037-12791088)
chr6 (798-836)||(12790459-12790497)
chr6 (678-708)||(16805813-16805843)
[»] chr3 (7 HSPs)
chr3 (257-508)||(16205259-16205509)
chr3 (512-643)||(16205565-16205696)
chr3 (798-845)||(16206363-16206411)
chr3 (106-140)||(46191371-46191405)
chr3 (106-144)||(48202291-48202329)
chr3 (115-144)||(5339116-5339145)
chr3 (803-836)||(16206442-16206475)
[»] chr7 (5 HSPs)
chr7 (17-248)||(9756910-9757135)
chr7 (794-863)||(9756823-9756893)
chr7 (794-869)||(14715616-14715691)
chr7 (798-861)||(4429812-4429876)
chr7 (671-713)||(14715281-14715323)
[»] chr4 (4 HSPs)
chr4 (794-859)||(17732313-17732379)
chr4 (103-140)||(5775384-5775421)
chr4 (115-144)||(7214544-7214573)
chr4 (115-144)||(33950144-33950173)
[»] chr1 (3 HSPs)
chr1 (794-859)||(18476046-18476112)
chr1 (798-861)||(22011516-22011580)
chr1 (650-713)||(18476409-18476472)
[»] chr5 (4 HSPs)
chr5 (794-859)||(22375748-22375814)
chr5 (798-861)||(19314013-19314077)
chr5 (106-140)||(9449468-9449502)
chr5 (671-713)||(22375413-22375455)
[»] chr2 (2 HSPs)
chr2 (794-859)||(1919935-1920001)
chr2 (671-713)||(1920292-1920334)
[»] chr8 (4 HSPs)
chr8 (798-861)||(19466527-19466591)
chr8 (798-861)||(19564208-19564272)
chr8 (671-713)||(22649558-22649600)
chr8 (107-140)||(12985392-12985425)


Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 301 - 791
Target Start/End: Original strand, 29601599 - 29602089
Alignment:
Q  301 gggttaagttatgaatctatagtatagtgttattaatatatacctatttacgattccaagggatacatgctagtactatatattgataaatcatagttcc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29601599 gggttaagttatgaatctatagtatagtgttattaatatatacctatttacgattccaagggatacatactagtactatatattgataaatcatagttcc 29601698  T
Q  401 ataaagtcaaaacggaatcccgatccattgtgccttgttatttgagttgtaataatttggtttgttaatctctagtgtgaatcatgatatgatatgaata 500  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29601699 ataaagacaaaacggaatcccgatcgattgtgccttgttatttgagttgaaataatttggtttgttaatctctagtgtgaatcatggtatgatatgaata 29601798  T
Q  501 catgggttctatttatgactagttgtctttttgattggttctcttgtacaaggcctaattgacagtatccatgagctacttgctaataatattagtttcc 600  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  29601799 catgggttctatttatgactagttgtcttttttattgtttctcttgtacaaggcctaattgacagtatccaagagccacttgcttataatattagtttcc 29601898  T
Q  601 tcaaaccccatgtctgattggtgctctctcaccctctcgtttgattataatttgtgttatatcattgactatattggcttaattattttgttgtatttgt 700  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29601899 taaacccccatgtctgattggtgctctctcaccctctcgtttgattataatttgtgttatatcattgactatattgccttaattattttgttgtatttgt 29601998  T
Q  701 gttttctctctgannnnnnnnattggcaggttcgtcatcgattttgtactacaagatgaagggatataaatgttggtgcttaagtattttt 791  Q
    |||||| ||||||        ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  29601999 gttttcgctctgattttttttattggcaggttagtcatcgattttgtaccacaagatgaagggatataaatgttggtgcttaagttttttt 29602089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 29601380 - 29601602
Alignment:
Q  8 atggataagataaatatgccagtaaaacaagttgcaattgggatgagtatcctatgaagcatcgatataaatactgacatcagacatgaacataaacacg 107  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||| |||||||||||     
T  29601380 atggataagataaatatgtcagtaaaacaaattgcaattgggatgagtatcctatgaagcatggatacaaatattgatatcagacataaacataaacaca 29601479  T
Q  108 acacccataataatttgagaaaatcacataatttaattatgtgtcagtgtcatgtcagtgtttgacatcgacacatgtccaacaataggacactcctaat 207  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||       ||||||||||||||||||||||||||| ||||    
T  29601480 acatctataataatttgagaaaatcacataatttaattatgtgtcagtgtcatgttattgt------ccgacacatgtccaacaataggacactcttaat 29601573  T
Q  208 ccaaagggtgtccgtgattcataatgggt 236  Q
    |||| || | |||||||||||||||||||    
T  29601574 ccaatggatatccgtgattcataatgggt 29601602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 16805514 - 16805448
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaat 859  Q
    |||||||||  |||||||| |||||||||||||||||||||| || |||||||||||| ||||||||    
T  16805514 agaagaatatagatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat 16805448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 859
Target Start/End: Original strand, 12791037 - 12791088
Alignment:
Q  809 atattgacgaagaatttcaagattt-ggagcacaagatgaagagatataaat 859  Q
    ||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  12791037 atattgacgaagaatttcaagatttagaagaacaagatgaagagatgtaaat 12791088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 798 - 836
Target Start/End: Original strand, 12790459 - 12790497
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgga 836  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  12790459 gaataatgatgatatggatgaagaatttcaagatttgga 12790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 678 - 708
Target Start/End: Complemental strand, 16805843 - 16805813
Alignment:
Q  678 cttaattattttgttgtatttgtgttttctc 708  Q
    |||||||||||||||||||||||||||||||    
T  16805843 cttaattattttgttgtatttgtgttttctc 16805813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 257 - 508
Target Start/End: Original strand, 16205259 - 16205509
Alignment:
Q  257 ctcttattgctttcttacatgtattaattaacatcttctctaaagggttaagttatgaatctatagtatagtgttattaatatatacctatttacgattc 356  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||| | || | |||| ||||||| || ||||| |||||| |||||    
T  16205259 ctcttattgctttcttacatatattaattaacatgttctctaaagggttgaattatgattttacaatatattgttattcatttatacttatttatgattc 16205358  T
Q  357 caagggatacatgctagtactatatattgataaatc--atagttccataaagtcaaaacggaatcccgatccattgtgccttgttatttgagttgtaata 454  Q
     |||  ||| || ||||||| | ||| |||| || |  ||||||||||||||  | || |||||||| || | ||||||||||||||||  | || || |    
T  16205359 aaagtaatatatactagtaccacataatgatgaaacatatagttccataaag--ataatggaatcccaattcgttgtgccttgttatttcggatgaaaaa 16205456  T
Q  455 atttggtttgttaatctctagtgtgaatcatgatatgatatgaatacatgggtt 508  Q
    |||||  ||||||||||||| ||||||||| | ||||| || ||||||||||||    
T  16205457 atttgtcttgttaatctctattgtgaatcacgttatga-attaatacatgggtt 16205509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 643
Target Start/End: Original strand, 16205565 - 16205696
Alignment:
Q  512 tttatgactagttgtctttttgattggttctcttgtacaaggcctaattgacagtatccatgagctacttgctaataatattagtttcctcaaaccccat 611  Q
    |||||| | ||||| |||||  |||| || ||||||| ||||| ||||||  |||||| | |||  | ||||  ||||||||||||||||||  |||| |    
T  16205565 tttatgcccagttgccttttatattgtttgtcttgtaaaaggcttaattggtagtatctaagagtcatttgcacataatattagtttcctcacccccctt 16205664  T
Q  612 gtctgattggtgctctctcaccctctcgtttg 643  Q
    |||||||| ||| |||| ||||||||||||||    
T  16205665 gtctgatttgtgatctcacaccctctcgtttg 16205696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 845
Target Start/End: Original strand, 16206363 - 16206411
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagat 845  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  16206363 gaataatgatgatattgaggaagattttcaagatttggaagcacaagat 16206411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 46191405 - 46191371
Alignment:
Q  106 cgacacccataataatttgagaaaatcacataatt 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  46191405 cgacaccaataataatttgagaaaatcacataatt 46191371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 48202329 - 48202291
Alignment:
Q  106 cgacacccataataatttgagaaaatcacataatttaat 144  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  48202329 cgacatccataatagtttgagaaaatcacataatttaat 48202291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 5339116 - 5339145
Alignment:
Q  115 taataatttgagaaaatcacataatttaat 144  Q
    ||||||||||||||||||||||||||||||    
T  5339116 taataatttgagaaaatcacataatttaat 5339145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 836
Target Start/End: Original strand, 16206442 - 16206475
Alignment:
Q  803 atgatgatattgacgaagaatttcaagatttgga 836  Q
    |||||||||||||||||||||||||||| |||||    
T  16206442 atgatgatattgacgaagaatttcaagacttgga 16206475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 9757135 - 9756910
Alignment:
Q  17 ataaatatgccagtaaaacaagttgcaattgggatgagtatcctatgaagcatcgatataaatactgacatcagacatgaacataaacacgacacccata 116  Q
    |||||| ||||| ||| ||||||||||||  ||||||||||| ||||||||||  ||| ||||||  |||| |||||| |||| || || || ||| |||    
T  9757135 ataaatttgccattaacacaagttgcaatcaggatgagtatcttatgaagcatgaatacaaatacgaacattagacataaacacaagcaggataccaata 9757036  T
Q  117 ataatttgagaaaatcacataa-----tttaattatgtgtcagtgtcatgtcagtgtttgacatcgacacatgtccaacaataggacactcctaatccaa 211  Q
    ||||||||||||||||||| ||     ||||||||||||| ||||||            |||||||||||||||||||||| |||||||  ||||| |||    
T  9757035 ataatttgagaaaatcacacaattcagtttaattatgtgttagtgtc-----------cgacatcgacacatgtccaacaacaggacacgtctaattcaa 9756947  T
Q  212 agggtgtccgtgattcataatgggtacccctctaaac 248  Q
    ||| |||| |||||||||| ||||| |||||||||||    
T  9756946 aggatgtctgtgattcatagtgggtgcccctctaaac 9756910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 794 - 863
Target Start/End: Complemental strand, 9756893 - 9756823
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgttg 863  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  9756893 agaagaataataatgatattgacaaagaatttcaagatttggaagcacaagatgaagagatataaatgttg 9756823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 794 - 869
Target Start/End: Original strand, 14715616 - 14715691
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgttgatgctt 869  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||| |||||||| |||||||||    
T  14715616 agaagaatattgatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat-ttgatgctt 14715691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 861
Target Start/End: Complemental strand, 4429876 - 4429812
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgt 861  Q
    |||||||||||||||  | ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  4429876 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatatagatgt 4429812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 713
Target Start/End: Original strand, 14715281 - 14715323
Alignment:
Q  671 atattggcttaattattttgttgtatttgtgttttctctctga 713  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  14715281 atattgccttaattattttgttgcatttgtgttttctcactga 14715323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 17732379 - 17732313
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttg-gagcacaagatgaagagatataaat 859  Q
    ||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||||||    
T  17732379 agaagaataatgatgatatggacgaagaatttcaagatttgaaagtacaagatgaagagatataaat 17732313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 5775421 - 5775384
Alignment:
Q  103 acacgacacccataataatttgagaaaatcacataatt 140  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  5775421 acacgacaccattaataatttgagaaaatcacataatt 5775384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 7214573 - 7214544
Alignment:
Q  115 taataatttgagaaaatcacataatttaat 144  Q
    ||||||||||||||||||||||||||||||    
T  7214573 taataatttgagaaaatcacataatttaat 7214544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 33950144 - 33950173
Alignment:
Q  115 taataatttgagaaaatcacataatttaat 144  Q
    ||||||||||||||||||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaat 33950173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 18476112 - 18476046
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttg-gagcacaagatgaagagatataaat 859  Q
    ||||||||||||||||||| |||||||||||||||||||||  || |||||||||||||||||||||    
T  18476112 agaagaataatgatgatatggacgaagaatttcaagatttgaaagtacaagatgaagagatataaat 18476046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 798 - 861
Target Start/End: Original strand, 22011516 - 22011580
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 861  Q
    |||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||||||||||    
T  22011516 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatataaatgt 22011580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 713
Target Start/End: Complemental strand, 18476472 - 18476409
Alignment:
Q  650 atttgtgttatatcattgactatattggcttaattattttgttgtatttgtgttttctctctga 713  Q
    ||||||||||| |||  ||| ||| || |||||||||||||||| |||||||||||||| ||||    
T  18476472 atttgtgttatctcacagacaatactgccttaattattttgttgcatttgtgttttctcactga 18476409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 794 - 859
Target Start/End: Original strand, 22375748 - 22375814
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaat 859  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||| ||||||||    
T  22375748 agaagaatattgatgatatggacgaagaatttcaagatttggaagaacaagatgaagatatataaat 22375814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 861
Target Start/End: Original strand, 19314013 - 19314077
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgg-agcacaagatgaagagatataaatgt 861  Q
    |||||||||||||||  | ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  19314013 gaataatgatgatatcaatgaagaatttgaagatttggaagcacaagatgaagagatatagatgt 19314077  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 9449468 - 9449502
Alignment:
Q  106 cgacacccataataatttgagaaaatcacataatt 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  9449468 cgacaccaataataatttgagaaaatcacataatt 9449502  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 713
Target Start/End: Original strand, 22375413 - 22375455
Alignment:
Q  671 atattggcttaattattttgttgtatttgtgttttctctctga 713  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  22375413 atattgccttaattattttgttgcatttgtgttttctcactga 22375455  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 794 - 859
Target Start/End: Complemental strand, 1920001 - 1919935
Alignment:
Q  794 agaagaataatgatgatattgacgaagaatttcaagatttg-gagcacaagatgaagagatataaat 859  Q
    ||||||||| ||||||||| |||||||||||||||||||||  || |||||||||||| ||||||||    
T  1920001 agaagaatattgatgatatggacgaagaatttcaagatttgaaagaacaagatgaagatatataaat 1919935  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 713
Target Start/End: Complemental strand, 1920334 - 1920292
Alignment:
Q  671 atattggcttaattattttgttgtatttgtgttttctctctga 713  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  1920334 atattgccttaattattttgttgcatttgtgttttctcactga 1920292  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 861
Target Start/End: Original strand, 19466527 - 19466591
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 861  Q
    |||||||||||||||  | | ||||||| |||||||||| |||||||||||||||||||||||||    
T  19466527 gaataatgatgatatcaatgcagaatttgaagatttggaagcacaagatgaagagatataaatgt 19466591  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 798 - 861
Target Start/End: Original strand, 19564208 - 19564272
Alignment:
Q  798 gaataatgatgatattgacgaagaatttcaagatttgga-gcacaagatgaagagatataaatgt 861  Q
    |||||||||||||||  | | ||||||| |||||||||| |||||||||||||||||||||||||    
T  19564208 gaataatgatgatatcaatgcagaatttgaagatttggaagcacaagatgaagagatataaatgt 19564272  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 713
Target Start/End: Complemental strand, 22649600 - 22649558
Alignment:
Q  671 atattggcttaattattttgttgtatttgtgttttctctctga 713  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  22649600 atattgccttaattattttgttgcatttgtgttttctcactga 22649558  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 12985392 - 12985425
Alignment:
Q  107 gacacccataataatttgagaaaatcacataatt 140  Q
    |||||| |||||||||||||||||||||||||||    
T  12985392 gacacctataataatttgagaaaatcacataatt 12985425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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