View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5937-Insertion-4 (Length: 924)
Name: NF5937-Insertion-4
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5937-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 68 - 464
Target Start/End: Complemental strand, 21586583 - 21586196
Alignment:
| Q |
68 |
gttttactaaagattgatacctggttcacaacaaaaagaataaacaatctcataaataaagatccattatactaaataagaaacatcttcctccaaaggt |
167 |
Q |
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| T |
21586583 |
gttttactaaagattgatacctggttcacaacaaaaagaataaacaatctcataaataaagatccattatactaaataagaaacatcttcctccaaaggt |
21586484 |
T |
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| Q |
168 |
tgtaatttcatgtttgaagatattatgatgtccaatgtcagcaaaagaaaaaatggagaactggaagtaggggccagataaagaaagcaagatgtctcca |
267 |
Q |
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| T |
21586483 |
tgtaatttcatgtttgaagatattatgatgtccaatgtcagcaaaagaaaaaatggagaactggaagtaggggccagataaagaaagcaagatgtctcca |
21586384 |
T |
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| Q |
268 |
aatcctcgatgtgnnnnnnnnnnnnnnnnnnnnctcaatgtagcataggattatgcattcaagataaattggggtgaaagttgttttgatttaaataatg |
367 |
Q |
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| T |
21586383 |
aatcctcgatgtg------aaagaggaaaaaaactcaatgtagcataggattatgcattcaag---aattggggtgaaagttgttttgatttaaataatg |
21586293 |
T |
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| Q |
368 |
gtgggagggtgccccaaacttaagttgtatccaattaaatacatccatttatattctcttactattaatgttattatagttgtcttgaaatatttat |
464 |
Q |
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| T |
21586292 |
gtgggagggtgccccaaacttaagttgtatccaattaaatacatccatttatattctcttactattaatgttattatagttgtcttgaaatatttat |
21586196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 301 - 478
Target Start/End: Complemental strand, 21593578 - 21593404
Alignment:
| Q |
301 |
ctcaatgtagcataggattatgcattcaagataaattggggtgaaagttgttttgatttaaataatggtgggagggtgccccaaacttaagttgtatcca |
400 |
Q |
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| T |
21593578 |
ctcaatgtagcataggattacgcattcaaga---attggggtgaaagttgttttgaattaaataatggtgagagggtacccctcacaga-gttgtatcta |
21593483 |
T |
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| Q |
401 |
attaaatacatccatttatattctcttactattaatgttattatagttgtc-ttgaaatatttatttcttgttatgata |
478 |
Q |
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| T |
21593482 |
attaaataaatcaaattatattctcttactattaatgttactatagttgtctttgaattatttatttcttgttatgata |
21593404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 21593800 - 21593655
Alignment:
| Q |
88 |
ctggttcacaacaaaaagaataaacaatctcataaataaa----gatccattatactaaataagaaacatcttcctccaaaggttgtaatttcatgtttg |
183 |
Q |
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| T |
21593800 |
ctggttcacagcaaaaagaataaacaatctcaaaaaaaaaaagggatcgattatactaaataagaaacatcttccttcaaaggttttaatttcatgtttg |
21593701 |
T |
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| Q |
184 |
aagatattatgatgtccaatgtcagcaaaagaaaaaatggagaact |
229 |
Q |
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| T |
21593700 |
aagatattatgatgtctgatgtcagcatgagaaaaagtggagaact |
21593655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 21582346 - 21582474
Alignment:
| Q |
68 |
gttttactaaagattgatacctggttcacaacaaaaagaataaacaatctcataaataaaga----------tccattatactaaataagaaacatcttc |
157 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||| | || |||||||||||||| ||||||||| |
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| T |
21582346 |
gttttactaaagatccatatccggttcacaacaaaaagaataaacaatcttgtaaaaaaaaaaaaaaaaaaatcgattatactaaataaagaacatcttc |
21582445 |
T |
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| Q |
158 |
ctccaaaggttgtaatttcatgtttgaag |
186 |
Q |
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| T |
21582446 |
gtctaaagtttttaatttcatgtttgaag |
21582474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 19617900 - 19617930
Alignment:
| Q |
135 |
tatactaaataagaaacatcttcctccaaag |
165 |
Q |
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| T |
19617900 |
tatactaaataagaaacatcttcctccaaag |
19617930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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