View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5937-Insertion-5 (Length: 873)

Name: NF5937-Insertion-5
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5937-Insertion-5
NF5937-Insertion-5
[»] chr2 (16 HSPs)
chr2 (414-842)||(35589890-35590320)
chr2 (295-388)||(35590382-35590475)
chr2 (295-353)||(41300517-41300575)
chr2 (481-598)||(38408899-38409016)
chr2 (435-571)||(18948734-18948870)
chr2 (542-588)||(21936739-21936785)
chr2 (447-559)||(37120925-37121037)
chr2 (513-571)||(2167594-2167652)
chr2 (519-572)||(9583530-9583583)
chr2 (542-599)||(39117329-39117386)
chr2 (25-82)||(42560536-42560593)
chr2 (533-588)||(37268135-37268190)
chr2 (458-589)||(38332093-38332224)
chr2 (28-82)||(43362121-43362175)
chr2 (519-572)||(32151509-32151562)
chr2 (526-572)||(129237-129283)
[»] chr5 (19 HSPs)
chr5 (412-842)||(39839570-39840003)
chr5 (14-145)||(25327228-25327358)
chr5 (513-568)||(6612316-6612371)
chr5 (237-286)||(25327092-25327141)
chr5 (296-358)||(33165088-33165150)
chr5 (519-572)||(31124201-31124254)
chr5 (296-357)||(39840100-39840161)
chr5 (526-572)||(14920894-14920940)
chr5 (489-571)||(19315081-19315163)
chr5 (491-568)||(39059073-39059150)
chr5 (516-568)||(15773108-15773160)
chr5 (532-572)||(16861413-16861453)
chr5 (26-82)||(34409569-34409625)
chr5 (513-568)||(4926751-4926806)
chr5 (534-597)||(8487963-8488026)
chr5 (513-572)||(17971958-17972017)
chr5 (466-569)||(32246838-32246940)
chr5 (489-567)||(27482749-27482827)
chr5 (492-569)||(14868290-14868366)
[»] chr4 (14 HSPs)
chr4 (434-639)||(30972411-30972617)
chr4 (409-592)||(27270003-27270187)
chr4 (674-842)||(30972625-30972794)
chr4 (489-572)||(13157369-13157452)
chr4 (466-572)||(13137018-13137124)
chr4 (295-357)||(41995845-41995907)
chr4 (296-367)||(21204745-21204816)
chr4 (544-598)||(26169354-26169408)
chr4 (526-586)||(25197110-25197170)
chr4 (296-356)||(48337143-48337203)
chr4 (537-588)||(5634774-5634825)
chr4 (513-572)||(40435082-40435141)
chr4 (513-571)||(4898945-4899003)
chr4 (25-82)||(32026180-32026235)
[»] chr7 (24 HSPs)
chr7 (434-657)||(40347834-40348055)
chr7 (434-527)||(27076555-27076648)
chr7 (434-527)||(27201653-27201746)
chr7 (434-598)||(29374727-29374891)
chr7 (298-388)||(27076733-27076823)
chr7 (298-388)||(27201478-27201568)
chr7 (25-82)||(12837096-12837153)
chr7 (517-572)||(16560029-16560084)
chr7 (517-572)||(16605578-16605633)
chr7 (296-373)||(43026157-43026235)
chr7 (489-568)||(17116481-17116560)
chr7 (520-571)||(24286355-24286406)
chr7 (489-568)||(34237096-34237175)
chr7 (513-572)||(35516630-35516689)
chr7 (522-588)||(41216317-41216383)
chr7 (491-588)||(26569629-26569726)
chr7 (519-572)||(37237907-37237960)
chr7 (532-588)||(14315513-14315569)
chr7 (484-588)||(37137257-37137361)
chr7 (534-572)||(9490965-9491003)
chr7 (534-588)||(10062068-10062122)
chr7 (25-82)||(16364402-16364457)
chr7 (519-568)||(10275423-10275472)
chr7 (434-571)||(47543365-47543502)
[»] chr6 (16 HSPs)
chr6 (434-695)||(14216043-14216305)
chr6 (528-600)||(9907068-9907140)
chr6 (513-572)||(24639112-24639171)
chr6 (519-572)||(10303269-10303322)
chr6 (519-572)||(34018116-34018169)
chr6 (535-571)||(31454164-31454200)
chr6 (513-572)||(11012370-11012429)
chr6 (513-588)||(34520482-34520557)
chr6 (412-571)||(7824137-7824297)
chr6 (543-615)||(10944044-10944117)
chr6 (296-357)||(14215864-14215925)
chr6 (519-572)||(19153438-19153491)
chr6 (526-586)||(33548676-33548736)
chr6 (434-572)||(11324405-11324543)
chr6 (542-627)||(12688069-12688155)
chr6 (490-599)||(18671947-18672055)
[»] chr1 (19 HSPs)
chr1 (434-599)||(4889361-4889526)
chr1 (513-571)||(44889173-44889231)
chr1 (519-572)||(51800488-51800541)
chr1 (435-567)||(42450651-42450783)
chr1 (513-571)||(33134313-33134371)
chr1 (522-588)||(48610913-48610979)
chr1 (519-572)||(3926696-3926749)
chr1 (513-589)||(29642130-29642206)
chr1 (519-572)||(5717197-5717250)
chr1 (519-572)||(27099695-27099748)
chr1 (544-608)||(34703615-34703680)
chr1 (491-599)||(7642913-7643021)
chr1 (296-368)||(44653858-44653929)
chr1 (517-572)||(38274194-38274249)
chr1 (491-598)||(44675007-44675114)
chr1 (296-350)||(4889647-4889701)
chr1 (522-572)||(9484783-9484833)
chr1 (522-588)||(25392433-25392499)
chr1 (434-568)||(26260693-26260827)
[»] chr3 (14 HSPs)
chr3 (491-571)||(35503866-35503946)
chr3 (438-572)||(25845586-25845720)
chr3 (521-572)||(44781768-44781819)
chr3 (441-588)||(47160910-47161057)
chr3 (522-588)||(51346337-51346403)
chr3 (466-586)||(23050039-23050159)
chr3 (488-571)||(13043288-13043371)
chr3 (488-571)||(13051365-13051448)
chr3 (519-572)||(39770849-39770902)
chr3 (489-572)||(20017500-20017583)
chr3 (534-572)||(3857734-3857772)
chr3 (519-569)||(14760363-14760413)
chr3 (534-571)||(19596154-19596191)
chr3 (549-598)||(45967110-45967159)
[»] chr8 (12 HSPs)
chr8 (488-599)||(9060674-9060785)
chr8 (522-588)||(459197-459263)
chr8 (489-598)||(39435531-39435640)
chr8 (495-567)||(6084081-6084153)
chr8 (544-599)||(16840212-16840267)
chr8 (526-572)||(447763-447809)
chr8 (434-571)||(8462536-8462672)
chr8 (519-567)||(27342812-27342860)
chr8 (298-353)||(21524027-21524082)
chr8 (513-571)||(1590308-1590366)
chr8 (434-472)||(21523898-21523936)
chr8 (527-572)||(43776156-43776201)
[»] scaffold0047 (1 HSPs)
scaffold0047 (489-586)||(64365-64462)
[»] scaffold0027 (1 HSPs)
scaffold0027 (519-588)||(45051-45120)
[»] scaffold0204 (1 HSPs)
scaffold0204 (296-356)||(24665-24725)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 414 - 842
Target Start/End: Complemental strand, 35590320 - 35589890
Alignment:
Q  414 gaaggggctacgccacca-caatgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttga 512  Q
    |||||||||| ||||||| | ||||||||||||||||||| | ||| |||| |||||||  ||||| ||||||| | |||||||||| |||||||| |||    
T  35590320 gaaggggctaagccaccaaccatgatagttgaagggaagacacggatacttcgccttcagccacctgaaagtcagcaacttaattttatcaaccacctga 35590221  T
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgt-aaattgatcgacgag 611  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  35590220 ataattgagcattctttgccattgaaaaacctgttatttctttctttccagatttcccacgtagttgcataccaaagaacatgtaaaatagatcgacgag 35590121  T
Q  612 tctttgagacaccaccatcaacagtgaactgattgaaatggtcccccatagagaacggaagaaccgtcgacaaacccaaccacctggaaatataatacca 711  Q
    |||||||| |||||||||||| ||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||| | |||||| ||||    
T  35590120 tctttgaggcaccaccatcaatagtgaactggttgaaatggt-ccccacagagaatggaagaaccgtcgacaaacccaaccacctgaagatataacacca 35590022  T
Q  712 aacc-aaccaaatatattacgatgtaaaaataaatgagccaaattctcctaagacccacaaccagtagcacacatgcggtcattgtgatgaatcacacca 810  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||| || |||||||||||     
T  35590021 aaccgaaccaaatatattacaatgtaaaaataaatgagccaaattctcctcagacccacaaccagaagcacacatgtgggcattatgctgaatcacaccg 35589922  T
Q  811 cgacgaagaaggttgtcctttgttggtaacct 842  Q
    || |||||||||||||||||||||||||||||    
T  35589921 cggcgaagaaggttgtcctttgttggtaacct 35589890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 35590475 - 35590382
Alignment:
Q  295 gaagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccaggaagaaacaccgaagtcaacaaatatttaca 388  Q
    |||||||||||||| |||||||||||||||| |||||||||  ||| ||||||||||||||||  |||||||||  ||||  ||||||||||||    
T  35590475 gaagaggctaaaatgaattatattaccacatcaaaagattcaaccttgcacaaggtatgccagagagaaacaccagagtctgcaaatatttaca 35590382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 41300517 - 41300575
Alignment:
Q  295 gaagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatg 353  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  41300517 gaagaggctaaaatgaattatattaccacatcaaaagatcctccctagcacaaggtatg 41300575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 481 - 598
Target Start/End: Complemental strand, 38409016 - 38408899
Alignment:
Q  481 aagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgc 580  Q
    |||| ||||||||||| ||||| |||||||| |||||||||||||||||  |||| |||||  |||||||||||||| | |||||||| |||    ||||    
T  38409016 aagttaacgacttaatcttgtccaccacttgcataattgagcattcttttgcattaaaaattatgttatttctttctgttcatatttctcacactattgc 38408917  T
Q  581 ataccaaagaacttgtaa 598  Q
    | |||||| |||||||||    
T  38408916 aaaccaaataacttgtaa 38408899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 571
Target Start/End: Complemental strand, 18948870 - 18948734
Alignment:
Q  435 tgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccat 534  Q
    ||||| ||||||| |||||||| | | ||  || |||| |||||  |||| | ||||||||||||||| || || || |||||||||||||||||  |||    
T  18948870 tgataattgaaggcaagagatgaacatttcaccctcaaccacctgtaagttaccgacttaattttgtccacaacctgcataattgagcattctttcgcat 18948771  T
Q  535 tgaaaatcctgttatttctttctttccatatttccca 571  Q
    | ||| | || ||||||||||||||||||||||||||    
T  18948770 taaaagttctattatttctttctttccatatttccca 18948734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 21936739 - 21936785
Alignment:
Q  542 cctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  21936739 cctgttatttctttctttccatatttcccacgtagtagcataccaaa 21936785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 447 - 559
Target Start/End: Original strand, 37120925 - 37121037
Alignment:
Q  447 ggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgt 546  Q
    |||||||| | ||||||||||||||| ||| | || |  | |||||| ||||| |||||||| |||||||| |||||||| ||| | ||||| ||| |||    
T  37120925 ggaagagaggtaaactttgccttcaaccacataaatgagagcgactttattttatcaaccacgtgaataatggagcattccttgactttgaatatcatgt 37121024  T
Q  547 tatttctttcttt 559  Q
    |||||||||||||    
T  37121025 tatttctttcttt 37121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 571
Target Start/End: Original strand, 2167594 - 2167652
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||| ||||||||||| || | ||||||||| ||||||||||||||||||||    
T  2167594 ataattgagcaatctttgccattaaataacctgttattcctttctttccatatttccca 2167652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 9583530 - 9583583
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| |||||||||||||||||||||||||||||  |||||||||||    
T  9583530 gagcaatctttaccattgaaaatcctgttatttctttctttttatatttcccac 9583583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 599
Target Start/End: Complemental strand, 39117386 - 39117329
Alignment:
Q  542 cctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaaa 599  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||| ||| ||||||    
T  39117386 cctgttatttctttctttccagatttcccacatagtagcataccaaataacctgtaaa 39117329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 42560536 - 42560593
Alignment:
Q  25 tcattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    ||||||||||||||||||| |||||||||||| || |||||||||| || ||||||||    
T  42560536 tcattgttgtgtgtgcgcccaaataattttatttgtgtttgtatctgtgcaagacttt 42560593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 533 - 588
Target Start/End: Complemental strand, 37268190 - 37268135
Alignment:
Q  533 attgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||| | |||| |||||||| |||||||||||||||||||||| ||||||||||    
T  37268190 attgaataacctgctatttcttactttccatatttcccacgtagtggcataccaaa 37268135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 458 - 589
Target Start/End: Original strand, 38332093 - 38332224
Alignment:
Q  458 aaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttct 557  Q
    ||||||||||| ||| ||| | ||||  | |||||| || || |||||||| || ||||| |||||||||||  |||| |||||| |||| |||||||||    
T  38332093 aaactttgcctccaatcacatgaaagagagcgactttatcttatcaaccacctggataatggagcattctttagcattaaaaatcatgttgtttctttct 38332192  T
Q  558 ttccatatttcccacgtagttgcataccaaag 589  Q
    ||||| |||| ||||  ||| ||| |||||||    
T  38332193 ttccaaattttccacacagtagcaaaccaaag 38332224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 43362121 - 43362175
Alignment:
Q  28 ttgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    |||||||||||||||  ||||||||| || || ||||||||||||||||||||||    
T  43362121 ttgttgtgtgtgcgctcaaataatttgatttgtgtttgtatctatgtaagacttt 43362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 32151562 - 32151509
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||    
T  32151562 gagcattctttactgttgaaaatcttgttatttctttctttccacatttcccac 32151509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 129237 - 129283
Alignment:
Q  526 ctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  129237 ctttgccattgaatatcatgttgtctctttctttccatatttcccac 129283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 3e-69; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 412 - 842
Target Start/End: Complemental strand, 39840003 - 39839570
Alignment:
Q  412 gtgaaggggctacgccacca-caatgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccactt 510  Q
    |||||||| ||| ||||||| | ||||||||| |||||||||||||||||||| | |||||| ||| | || | |  |||||||||||| |||||||| |    
T  39840003 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaacgacgtcgacttaattttatcaaccacct 39839904  T
Q  511 gaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaaa-ttgatcgacg 609  Q
    | |  || | ||| |||||| ||||||| | ||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  39839903 gtaggatagggcactctttgtcattgaacaacctattatttttttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattgatcgacg 39839804  T
Q  610 agtctttgagacaccaccatcaacagtgaactgattgaaatggtcccccatagagaacggaagaaccgtcgacaaacccaaccacctggaaatataatac 709  Q
    || |||||  ||||||||||||  |||||||||||||||||||||||| |||||||| || |  ||||| |||| ||||| ||||||| |||||||| ||    
T  39839803 agcctttgtaacaccaccatcagaagtgaactgattgaaatggtccccaatagagaatgggattaccgttgacatacccatccacctgtaaatataaaac 39839704  T
Q  710 caaa-ccaaccaaatatattacgatgtaaaaataaatgagccaaattctcctaagacccacaaccagtagcacacatgcggtcattgtgatgaatcacac 808  Q
    |||| | |||||||  |||||| |||||||||||| ||| |||| ||||||| |   |||||||||| | |||| |  |   |||  | ||||||||| |    
T  39839703 caaatcgaaccaaaactattacaatgtaaaaataagtgatccaagttctcctcaataccacaaccagaaacacataatctaacatcattatgaatcactc 39839604  T
Q  809 cacgacgaagaaggttgtcctttgttggtaacct 842  Q
    ||| ||||||||||||||| ||||||||||||||    
T  39839603 cacaacgaagaaggttgtcatttgttggtaacct 39839570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 25327358 - 25327228
Alignment:
Q  14 taatttatttatcattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttttcacttatggggttcttgcccttaataataa 113  Q
    |||||||||||| ||| |||| |||||| |||||||| ||||| || |||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  25327358 taatttatttattattattgtatgtgcgtctaaataactttatttgtgtttgtatctatgtaagactttcc-cttatggggttcttgcccttaataataa 25327260  T
Q  114 tttatataaaagtaagttattttattcaacag 145  Q
    ||||||||||||||||||||||||||||||||    
T  25327259 tttatataaaagtaagttattttattcaacag 25327228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 6612371 - 6612316
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  6612371 ataatcgagcattctttaccgttgaaaatcctgttatttctttctttccatatttc 6612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 25327141 - 25327092
Alignment:
Q  237 gtaagttatttcgaaaagatttggaggtagctctttcttaaaaacaaaca 286  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  25327141 gtaaattatttcgaaaagatttggaggtagttctttcttaaaaacaaaca 25327092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 33165088 - 33165150
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccagg 358  Q
    ||||| |||||||||| ||||||| ||||| ||||| ||||||||||||||||||||| ||||    
T  33165088 aagagtctaaaataaaatatattatcacatcaaaaggttctccctagcacaaggtatgtcagg 33165150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 31124254 - 31124201
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||||  ||||||||||||||||||||||||||||||| |||||||||    
T  31124254 gagcactctttagcattgaaaatcctgttatttctttctttccagatttcccac 31124201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 39840161 - 39840100
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccag 357  Q
    ||||||||||||  |||||||||||||||| ||||| | ||||||||||||| |||||||||    
T  39840161 aagaggctaaaacgaattatattaccacatcaaaaggtcctccctagcacaatgtatgccag 39840100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 14920894 - 14920940
Alignment:
Q  526 ctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||    
T  14920894 ctttgccattgaatatcctgttgtttctttccttccatatttcccac 14920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 489 - 571
Target Start/End: Original strand, 19315081 - 19315163
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    |||||||| || |||||||| || || |  || ||||||||||| ||||| | ||||||||||||||||||||| ||||||||    
T  19315081 gacttaatcttatcaaccacctgcattaccgaccattctttgcctttgaataacctgttatttctttctttccaaatttccca 19315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 39059150 - 39059073
Alignment:
Q  491 cttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    |||||| || ||||||||||| | ||| ||||| |||||  ||||||||||| |||| |||||||||||||| |||||    
T  39059150 cttaatcttatcaaccacttgtaaaatggagcactcttttgcattgaaaatcttgttgtttctttctttccaaatttc 39059073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 15773160 - 15773108
Alignment:
Q  516 attgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    |||||||||||||| ||||| || ||| ||||||||||||||||||| |||||    
T  15773160 attgagcattctttaccattaaagatcatgttatttctttctttccaaatttc 15773108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 16861413 - 16861453
Alignment:
Q  532 cattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  16861413 cattgaagatcatgttatttctttctttccatatttcccac 16861453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 34409569 - 34409625
Alignment:
Q  26 cattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    |||||||||||||||||| |||||||||||| |  |||| |||||||||||| ||||    
T  34409569 cattgttgtgtgtgcgcccaaataattttatttatgtttatatctatgtaaggcttt 34409625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 4926806 - 4926751
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    ||||||| |||||||||  || |||||||| ||||||||||||||||||| |||||    
T  4926806 ataattgggcattctttatcaatgaaaatcatgttatttctttctttccaaatttc 4926751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 8488026 - 8487963
Alignment:
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgta 597  Q
    ||||||||||  |||||||||||||||||||||||||||   |||||| |||||| ||| ||||    
T  8488026 ttgaaaatccgattatttctttctttccatatttcccacactgttgcaaaccaaataacctgta 8487963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 17971958 - 17972017
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||| ||||||  ||||| ||||  |||||||||||||||||||||||||||||    
T  17971958 ataatcgagctttctttatcattggaaattatgttatttctttctttccatatttcccac 17972017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 569
Target Start/End: Complemental strand, 32246940 - 32246838
Alignment:
Q  466 ccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatat 565  Q
    ||||||| ||| | ||||| |||||||| |||||||| |||||||| ||| | ||||| | ||||   ||||||| |||||| |||||||||||||| ||    
T  32246940 ccttcaaccacttgaaagttaacgactttattttgtctaccacttgcata-tagagcaatttttgttcttgaaaaccctgttgtttctttctttccaaat 32246842  T
Q  566 ttcc 569  Q
    ||||    
T  32246841 ttcc 32246838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 567
Target Start/End: Original strand, 27482749 - 27482827
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatattt 567  Q
    |||||||| || |||||||| ||||| |  |||||||||||  |||| || | ||||||||||||||||||||| ||||    
T  27482749 gacttaatcttatcaaccacctgaattaccgagcattctttatcattaaacaacctgttatttctttctttccaaattt 27482827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 14868290 - 14868366
Alignment:
Q  492 ttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcc 569  Q
    ||||||||||| || | ||| ||||||||||||| |||  | || ||||| ||||||||||||||||| |||||||||    
T  14868290 ttaattttgtccactaattgcataattgagcattatttatcgtt-aaaattctgttatttctttcttttcatatttcc 14868366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 9e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 434 - 639
Target Start/End: Original strand, 30972411 - 30972617
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    ||||||||||||||||||||| ||||| || |||||||  ||| | ||||||| |||||||||||| |||||||| || ||||||||||| |||||||||    
T  30972411 atgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataattgagcactctttgcca 30972510  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgt-aaattgatcgacgagtctttgagacaccaccatcaa 632  Q
    || || | | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||| || | ||||| |||||| |||||||    
T  30972511 ttaaagagcatgttatttctttctttccaaattttccacgtagttgcataccaaagaacctgtaaaattgatcgtcgtgcctttgtgacaccgccatcaa 30972610  T
Q  633 cagtgaa 639  Q
    |||||||    
T  30972611 cagtgaa 30972617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 409 - 592
Target Start/End: Original strand, 27270003 - 27270187
Alignment:
Q  409 attgtgaaggggctacgccacca-caatgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaacca 507  Q
    |||||||| || ||| ||||||| | |||||| ||||||||||| || ||||| || |||||||| ||| | ||||| |  ||||||||||| |||||||    
T  27270003 attgtgaatggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccacatgaaagtgattgacttaattttatcaacca 27270102  T
Q  508 cttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaac 592  Q
    | |||| |||||  ||||   |||| || || | | ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  27270103 cgtgaacaattggtcattgagtgcctttaaagagcatgttatttctttctttccagatttctcacgttgttgcataccaaagaac 27270187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 674 - 842
Target Start/End: Original strand, 30972625 - 30972794
Alignment:
Q  674 accgtcgacaaacccaaccacctggaaatataataccaaa-ccaaccaaatatattacgatgtaaaaataaatgagccaaattctcctaagacccacaac 772  Q
    |||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||||| ||||||||||||||| ||  || |||| |  |||||||| |    
T  30972625 accgtcgacaaacccaaccacctggagatatagtgccaaatcgaaccaaatatattacaatgtaaaaataaatgtgctgaagtctcttcggacccacagc 30972724  T
Q  773 cagtagcacacatgcggtcattgtgatgaatcacaccacgacgaagaaggttgtcctttgttggtaacct 842  Q
    ||| | ||||||| | |  ||  | | ||||||| |||| |||||||||||| ||||| ||||| |||||    
T  30972725 cagcaacacacatccaggaatcattaggaatcactccacaacgaagaaggttatccttagttggcaacct 30972794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 572
Target Start/End: Complemental strand, 13157452 - 13157369
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||||||| ||||| || |||||||||| ||||||  |||| |||||| |||| ||||||||||||||||||||||||    
T  13157452 gacttcattttgtccaccacctgcataattgagctttcttttgcattaaaaatcttgttgtttctttctttccatatttcccac 13157369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 466 - 572
Target Start/End: Complemental strand, 13137124 - 13137018
Alignment:
Q  466 ccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatat 565  Q
    ||||||| |||||  |||| ||||||||||| ||||| |||   || |||||||||||||||||  | || ||||| ||||||||||||||||| |||||    
T  13137124 ccttcaaccacctgtaagttaacgacttaatcttgtccaccgtctgcataattgagcattcttttgcgttaaaaattctgttatttctttcttttcatat 13137025  T
Q  566 ttcccac 572  Q
    |||||||    
T  13137024 ttcccac 13137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 41995845 - 41995907
Alignment:
Q  295 gaagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccag 357  Q
    |||||||||||||| |||||||||||||||| |||||||  ||||||||| ||||||| ||||    
T  41995845 gaagaggctaaaatgaattatattaccacatcaaaagatcttccctagcataaggtataccag 41995907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 21204745 - 21204816
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccaggaagaaacac 367  Q
    |||| |||||||| || ||||||||||||| |||| || ||||||||||||||||||| |||  ||||||||    
T  21204745 aagatgctaaaatgaaatatattaccacatcaaaaaatcctccctagcacaaggtatgtcagagagaaacac 21204816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 26169354 - 26169408
Alignment:
Q  544 tgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaa 598  Q
    ||||||||||||||||||||||||| ||||  |||||| |||||| |||||||||    
T  26169354 tgttatttctttctttccatatttctcacgctgttgcaaaccaaataacttgtaa 26169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 586
Target Start/End: Complemental strand, 25197170 - 25197110
Alignment:
Q  526 ctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcatacca 586  Q
    ||||||||| ||| | |||| |||||||||||||| ||||||||||| |||| ||||||||    
T  25197170 ctttgccatcgaataacctgatatttctttctttctatatttcccacatagtagcatacca 25197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 48337203 - 48337143
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgcca 356  Q
    ||||| |||||  ||||||||||||||||| ||||| |||||||||||| |||| ||||||    
T  48337203 aagagtctaaataaaattatattaccacatcaaaaggttctccctagcataaggcatgcca 48337143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 5634825 - 5634774
Alignment:
Q  537 aaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||||||||||||||||||||| | |||||||  ||||||| ||||||    
T  5634825 aaaatcctgttatttctttctttccacaattcccacacagttgcaaaccaaa 5634774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 40435141 - 40435082
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||| ||||||  ||||||||||  ||||||||||||||||||| |||||||||    
T  40435141 ataatcgagctttctttatcattgaaaattatgttatttctttctttccagatttcccac 40435082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 4899003 - 4898945
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||| ||||| |||||| | ||||||||  ||||||||||||||||| ||||||||||    
T  4899003 ataatcgagcaatctttgtccttgaaaattttgttatttctttctttcaatatttccca 4898945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 32026180 - 32026235
Alignment:
Q  25 tcattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    |||||||||||||||| |  |||| ||||||| || ||||||||||||||||||||||    
T  32026180 tcattgttgtgtgtgccc--aaattattttatttgtgtttgtatctatgtaagacttt 32026235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 7e-39; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 434 - 657
Target Start/End: Complemental strand, 40348055 - 40347834
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||||||||| |||||| |||||||||| |||||||| ||| | || |||| |||||||||||| || ||||  || ||||||| ||| ||||| |||    
T  40348055 atgatagttgaaaggaagaaatggaaacttcgccttcaaccacatgaacgtcagcgacttaattttatctaccatctgcataattgggcactctttacca 40347956  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgt-aaattgatcgacgagtctttgagacaccaccatcaa 632  Q
    ||||| |  ||||||||||||||||||||||||||||||   || ||||||| |||||| ||| ||||||| ||| ||| |||| | |||||||| ||||    
T  40347955 ttgaacagtctgttatttctttctttccatatttcccac---gtggcatacctaagaacctgtaaaattgaccgaggagcctttaaaacaccaccctcaa 40347859  T
Q  633 cagtgaactgattgaaatggtcccc 657  Q
     ||||||| ||||||||||||||||    
T  40347858 aagtgaaccgattgaaatggtcccc 40347834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 434 - 527
Target Start/End: Complemental strand, 27076648 - 27076555
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattct 527  Q
    ||||||||||||||||| |||||||||||| |||||| | ||||| ||||||| | ||| |||||| |||||||||||||||||||| ||||||    
T  27076648 atgatagttgaagggaatagatggaaacttcgccttctaccacctgaaagtcagctactcaattttatcaaccacttgaataattgaacattct 27076555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 434 - 527
Target Start/End: Original strand, 27201653 - 27201746
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattct 527  Q
    ||||||||||||||||| |||||||||||| |||||| | ||||| ||||||| | ||| |||||| |||||||||||||||||||| ||||||    
T  27201653 atgatagttgaagggaatagatggaaacttcgccttctaccacctgaaagtcagctactcaattttatcaaccacttgaataattgaacattct 27201746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 434 - 598
Target Start/End: Original strand, 29374727 - 29374891
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||||||||   ||||||| |||||||| |||||||| ||| | |||| || ||| |||||||| || ||||| || | ||||||||||| ||| |||    
T  29374727 atgatagttgagatgaagagaaggaaacttcgccttcaaccacataaaagacagcgatttaattttatccaccacctgtaaaattgagcattgtttacca 29374826  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaa 598  Q
     |||| ||||| || |||||||||||||| || |||||||  |||||| |||||||||| |||||    
T  29374827 gtgaagatcctattgtttctttctttccagatctcccacgatgttgcaaaccaaagaacctgtaa 29374891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 27076823 - 27076733
Alignment:
Q  298 gaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccaggaagaaacaccgaagtcaacaaatatttaca 388  Q
    |||| |||||| |||||||||||||||| |||| ||||| |||| |||||||||||  ||| |||| ||||  ||||||||||||||||||    
T  27076823 gaggttaaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttaca 27076733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 27201478 - 27201568
Alignment:
Q  298 gaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccaggaagaaacaccgaagtcaacaaatatttaca 388  Q
    |||| |||||| |||||||||||||||| |||| ||||| |||| |||||||||||  ||| |||| ||||  ||||||||||||||||||    
T  27201478 gaggttaaaatgaattatattaccacattaaaaaattcttcctaacacaaggtatgttagggagaatcacctgagtcaacaaatatttaca 27201568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 12837153 - 12837096
Alignment:
Q  25 tcattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    ||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||    
T  12837153 tcattgttgtgtgtgcgcccaaataattttatttgtgtttgtgtctatgtaagacttt 12837096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 517 - 572
Target Start/End: Complemental strand, 16560084 - 16560029
Alignment:
Q  517 ttgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  16560084 ttgaacattcttttccattgaataacctgttatttctttctttccatatttcccac 16560029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 16605578 - 16605633
Alignment:
Q  517 ttgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  16605578 ttgaacattcttttccattgaataacctgttatttctttctttccatatttcccac 16605633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 43026157 - 43026235
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgc-caggaagaaacaccgaagt 373  Q
    ||||||||||||| |||||||||||||||| ||||  |||| ||||||||||||| |||  ||||||||||||| ||||    
T  43026157 aagaggctaaaatgaattatattaccacatcaaaaacttcttcctagcacaaggtgtgctaaggaagaaacaccaaagt 43026235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 17116481 - 17116560
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    |||||||| || ||||||||||| || |  ||||| |||||||| ||||| | ||||||||||||||||||||| |||||    
T  17116481 gacttaatcttatcaaccacttgtattaccgagcaatctttgcctttgaataacctgttatttctttctttccaaatttc 17116560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 24286406 - 24286355
Alignment:
Q  520 agcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  24286406 agcattctttgaccttgaaaattctattatttctttctttccatatttccca 24286355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 34237175 - 34237096
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    |||||||||||||||||||| ||||| | ||| ||||||||| |  |||||| | |||||||| |||||||||| |||||    
T  34237175 gacttaattttgtcaaccacctgaattactgaacattctttgtctctgaaaaacatgttatttttttctttccaaatttc 34237096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 35516689 - 35516630
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||||||| || | |||||||||||||| | ||||||||||||||||||| |||||||||    
T  35516689 ataattgaacaatttttgccattgaaaaccttgttatttctttctttccaaatttcccac 35516630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 41216317 - 41216383
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||| |||||||| |   ||||||||||||||||||||||||| |||| ||| ||||||||||    
T  41216317 cattctttaccattgaataaaatgttatttctttctttccatatttcacacgcagtagcataccaaa 41216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 26569726 - 26569629
Alignment:
Q  491 cttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||||||| |||   ||| | ||| ||||||||||| ||| |||| | ||| ||||||||||||||||| || | |||| |||||||||||||||    
T  26569726 cttaattttgttaacagattgtaaaatcgagcattctttaccagtgaataacctattatttctttctttccagatattccacatagttgcataccaaa 26569629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 37237907 - 37237960
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  37237907 gagcactctttaccattgaagatactgttatttctttctttacatatttcccac 37237960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 588
Target Start/End: Original strand, 14315513 - 14315569
Alignment:
Q  532 cattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||| ||||||||||||||||| ||||| |||||||||| ||| ||| ||||||    
T  14315513 cattgaatatcctgttatttctttccttccaaatttcccacgcagtagcaaaccaaa 14315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 588
Target Start/End: Complemental strand, 37137361 - 37137257
Alignment:
Q  484 tcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcata 583  Q
    ||||| ||||||| ||||| |||||||| |  ||||||| ||| ||| |||| |||||  ||||||| ||||| ||||| ||||||||||| || ||| |    
T  37137361 tcaacaacttaatcttgtccaccacttgcaatattgagctttccttggcattaaaaattatgttattcctttccttccaaatttcccacgttgtcgcaaa 37137262  T
Q  584 ccaaa 588  Q
    |||||    
T  37137261 ccaaa 37137257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 9490965 - 9491003
Alignment:
Q  534 ttgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  9490965 ttgaaaatcctgttatttctttctttccaaattttccac 9491003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 534 - 588
Target Start/End: Original strand, 10062068 - 10062122
Alignment:
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||||||  ||||||||| ||||||||||||||||| | |||||| ||||||    
T  10062068 ttgaaaatccgattatttcttgctttccatatttcccacattgttgcaaaccaaa 10062122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 16364402 - 16364457
Alignment:
Q  25 tcattgttgtgtgtgcgcctaaataattttatgtgcgtttgtatctatgtaagacttt 82  Q
    |||||||||||||||   |||||||||||||| || |||||||| |||||||||||||    
T  16364402 tcattgttgtgtgtgt--ctaaataattttatttgtgtttgtatttatgtaagacttt 16364457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 10275472 - 10275423
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttc 568  Q
    ||||||||||| |  |||||| || |||||||||||||||||||||||||    
T  10275472 gagcattctttactgttgaaagtcatgttatttctttctttccatatttc 10275423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 571
Target Start/End: Complemental strand, 47543502 - 47543365
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||| ||||||||||||||   |||||| | |||||| ||| | ||||  | ||||||||| ||||| ||||| || ||||  || || |||||| ||    
T  47543502 atgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgaccacctggataaccgaacaatctttgaca 47543403  T
Q  534 ttgaaaatcctgttatttctttctttccatatttccca 571  Q
    || || | ||| || |||||||| ||||||||||||||    
T  47543402 ttaaacaacctattgtttctttccttccatatttccca 47543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 434 - 695
Target Start/End: Original strand, 14216043 - 14216305
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||||| |||| ||||||| ||||| ||   |||||| ||| | || |||| |||||||| ||| |||| ||| || | |||||||||||||||||||    
T  14216043 atgatagtcgaagagaagagaaggaaatttcttcttcaaccacatgaacgtcagcgacttaactttatcaatcacctgcacaattgagcattctttgcca 14216142  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaa-attgatcgacgagtctttgagacaccaccatcaa 632  Q
    || || | ||| ||||| ||||||||||||||||||||  || |  ||||||||| ||| ||||| || |||| | | | |||||  || ||||||||||    
T  14216143 ttaaataccctattattcctttctttccatatttcccatataatgacataccaaataacatgtaagatagatcaatgtgcctttgtaactccaccatcaa 14216242  T
Q  633 cagtgaactgattgaaatggtcccccatagagaacggaagaaccgtcgacaaacccaaccacc 695  Q
     ||| |||||||||||||||| |||  ||||||| ||||  |||||||||| ||||| |||||    
T  14216243 tagtaaactgattgaaatggtgccctgtagagaatggaattaccgtcgacacacccatccacc 14216305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 528 - 600
Target Start/End: Complemental strand, 9907140 - 9907068
Alignment:
Q  528 ttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaaat 600  Q
    |||||||| || | ||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||    
T  9907140 ttgccattaaataacctgttatttctttctttccaaatttcccacgaagttgcaaaccaaagaacctgtaaat 9907068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 24639171 - 24639112
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  24639171 ataatcgagcattctttaccgttgaaaatcctgttatttctttcttttcatatttcccac 24639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 10303269 - 10303322
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||| || |||||| ||||| ||||||||||||||||||||||||||    
T  10303269 gagcattctttaccgttgaaagtcctgctatttctttctttccatatttcccac 10303322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 34018116 - 34018169
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  34018116 gagcaatctttaccattaaaaatcctgttatttctttccttccatatttcccac 34018169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 571
Target Start/End: Original strand, 31454164 - 31454200
Alignment:
Q  535 tgaaaatcctgttatttctttctttccatatttccca 571  Q
    |||||||||||||||||||||||||||||||||||||    
T  31454164 tgaaaatcctgttatttctttctttccatatttccca 31454200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 572
Target Start/End: Complemental strand, 11012429 - 11012370
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||||||| |||| ||||    
T  11012429 ataattgagcattctttactgttgaaaatcatgttatttctttctttccacattttccac 11012370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 588
Target Start/End: Original strand, 34520482 - 34520557
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||| |||||||||||  | |||||||| |||||||||||||||||  ||||||||||||| || ||| ||||||    
T  34520482 ataatcgagcattctttaactttgaaaatgctgttatttctttctttttatatttcccacgtggtagcaaaccaaa 34520557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 571
Target Start/End: Original strand, 7824137 - 7824297
Alignment:
Q  412 gtgaaggggctacgccaccaca-atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaa-cgacttaattttgtcaaccact 509  Q
    ||||| |||||| ||||||||  ||| || |||| ||||||||| | | |||| |||||||| ||| | |||| ||| ||||||||| ||||| |||||     
T  7824137 gtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccacgt-aaaggcaagcgacttaatcttgtcgaccacc 7824235  T
Q  510 tgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||| |||  |||||||||||| |||| || | ||| || |||||||| ||||||||||||||    
T  7824236 tgattaaccgagcattctttgacattaaacagcctattgtttctttccttccatatttccca 7824297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 615
Target Start/End: Complemental strand, 10944117 - 10944044
Alignment:
Q  543 ctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgta-aattgatcgacgagtctt 615  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||||  ||||| | |||||||| |||||||||    
T  10944117 ctgttatttctttctttctaaatttcccacgtagatgcaaaccaaatgacttgaagaattgatcaacgagtctt 10944044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 14215864 - 14215925
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccag 357  Q
    ||||||||||||| |||||||||||||||| ||||| |  | ||||||||||||||| ||||    
T  14215864 aagaggctaaaatgaattatattaccacatcaaaaggtcatgcctagcacaaggtataccag 14215925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 19153438 - 19153491
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| || ||||||||||||||||||||||||||| | |||||||||    
T  19153438 gagcactctttaccgttgaaaatcctgttatttctttctttctaaatttcccac 19153491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 526 - 586
Target Start/End: Original strand, 33548676 - 33548736
Alignment:
Q  526 ctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcatacca 586  Q
    ||||||||||||| |||||||| ||||||||||| ||||||| |||| | || ||||||||    
T  33548676 ctttgccattgaatatcctgttgtttctttcttttcatattttccacatcgtagcatacca 33548736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 572
Target Start/End: Complemental strand, 11324543 - 11324405
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||| |||||||||||||| | ||| || |||||||| ||| | ||||  | | ||||||| ||||| ||||  |||| ||  |||||  ||||| ||    
T  11324543 atgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctgaagaaccgagcaaactttgtca 11324444  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| | ||||||||||||||| ||||| |||| ||||    
T  11324443 ttgaagagcctgttatttctttccttccaaattttccac 11324405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 542 - 627
Target Start/End: Complemental strand, 12688155 - 12688069
Alignment:
Q  542 cctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgt-aaattgatcgacgagtctttgagacaccacc 627  Q
    ||||||||||| ||||||||| ||||||||| |||  |||||||||| ||| ||| |||||||| |||||  ||||||  |||||||    
T  12688155 cctgttatttcgttctttccagatttcccacatagcagcataccaaataacctgtaaaattgattgacgaaactttgatgcaccacc 12688069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 599
Target Start/End: Complemental strand, 18672055 - 18671947
Alignment:
Q  490 acttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaag 589  Q
    ||||||| ||||| ||| | |||||||||||||  |||||  |||| |||||  ||||| | ||||| ||||| |||||||||  ||||||| ||||||     
T  18672055 acttaatcttgtccaccccctgaataattgagctatcttttgcattaaaaattatgttaatcctttccttccaaatttcccac-aagttgcacaccaaat 18671957  T
Q  590 aacttgtaaa 599  Q
    ||||||||||    
T  18671956 aacttgtaaa 18671947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 434 - 599
Target Start/End: Complemental strand, 4889526 - 4889361
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    ||||||||| ||||||||||| || ||||| ||||| || ||| | || |  | |||||||||||| |||||||| | |   |||||||||||||||| |    
T  4889526 atgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccacataagacattgagcattctttgcta 4889427  T
Q  534 ttgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaaa 599  Q
    ||||| | ||||||||||||||||||| | ||||| |||||| ||||| |||||| ||||||||||    
T  4889426 ttgaataacctgttatttctttctttctaaatttctcacgtaattgcaaaccaaataacttgtaaa 4889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 513 - 571
Target Start/End: Original strand, 44889173 - 44889231
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  44889173 ataatcgagcattctttgaccttgaaaattctgttatttctttctttccatatttccca 44889231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 51800541 - 51800488
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  51800541 gagcactctttatcattgaaaatcctgttatttctttctttccatatttcccac 51800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 42450651 - 42450783
Alignment:
Q  435 tgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccat 534  Q
    ||||| ||||||| |||||||| | | ||  || |||| |||||  |||| | |||||||||||| || || || || |||||||||||||||||  |||    
T  42450651 tgataattgaaggcaagagatgtacatttcaccctcaaccacctgtaagttaccgacttaattttatccacaacctgcataattgagcattctttcgcat 42450750  T
Q  535 tgaaaatcctgttatttctttctttccatattt 567  Q
    ||||| | || ||||||||||||||||||||||    
T  42450751 tgaaagttctattatttctttctttccatattt 42450783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 33134371 - 33134313
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||| |||||||||||| | |||||||| || ||||||||||||||||||||||||||    
T  33134371 ataatcgagcattctttgaccttgaaaattctattatttctttctttccatatttccca 33134313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 48610913 - 48610979
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||| |  ||| ||||||||||    
T  48610913 cattctttgtcattgaaaattctgctatttctttctttccatatttcccccacagtagcataccaaa 48610979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 3926696 - 3926749
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  3926696 gagcactctttaccattgaaaattctgttatttctttctttccaaatttcccac 3926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 589
Target Start/End: Original strand, 29642130 - 29642206
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaag 589  Q
    ||||| ||||| |||||| | |||||||| ||||| |||||||||||||||||||||||  |||| ||| |||||||    
T  29642130 ataatcgagcaatctttgaccttgaaaattctgttgtttctttctttccatatttcccaaatagtagcaaaccaaag 29642206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 5717250 - 5717197
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| |||||||||||| | |||||||||||||||||||||| ||||    
T  5717250 gagcactctttaccattgaaaatcatattatttctttctttccatattttccac 5717197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 27099695 - 27099748
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| |||||  ||||||||||| |||||||||||||||||||||||| ||||    
T  27099695 gagcaatctttagcattgaaaatcttgttatttctttctttccatattttccac 27099748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 34703615 - 34703680
Alignment:
Q  544 tgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgt-aaattgatcgac 608  Q
    ||||||||||||||||||||||||||||   ||| |||||||| | ||||||| ||||||||||||    
T  34703615 tgttatttctttctttccatatttcccagacagtagcataccagataacttgtaaaattgatcgac 34703680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 599
Target Start/End: Complemental strand, 7643021 - 7642913
Alignment:
Q  491 cttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaaga 590  Q
    |||||| ||||| || ||||| | ||| ||||| |||||  ||||||| || || ||||||| ||||||||||||| |||||| ||||||| |||| | |    
T  7643021 cttaatcttgtccacaacttgtaaaatggagcaatcttttgcattgaatattctattatttcgttctttccatattgcccacgcagttgcaaaccatata 7642922  T
Q  591 acttgtaaa 599  Q
    || ||||||    
T  7642921 acctgtaaa 7642913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 44653858 - 44653929
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgccaggaagaaacacc 368  Q
    ||||||||||||||||||||||||||| || |||||  ||||| ||||| ||||||||| ||| | |||||||    
T  44653858 aagaggctaaaataaattatattaccatatcaaaag-gtctccgtagcataaggtatgctagggaaaaacacc 44653929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 38274194 - 38274249
Alignment:
Q  517 ttgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||| |||||||| || || |||||||||||||||||||| ||||| |||||||||    
T  38274194 ttgaacattcttttcctttaaaaatcctgttatttctttccttccaaatttcccac 38274249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 598
Target Start/End: Complemental strand, 44675114 - 44675007
Alignment:
Q  491 cttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaaga 590  Q
    |||||| || ||||||||||| |  || |||||||||| ||||||||| | |||||||||| |||||||  | ||||| |||  ||||||| |||||| |    
T  44675114 cttaatcttatcaaccacttgcacgatcgagcattcttagccattgaataacctgttatttatttctttataaatttctcacacagttgcaaaccaaata 44675015  T
Q  591 acttgtaa 598  Q
    || |||||    
T  44675014 acctgtaa 44675007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 4889701 - 4889647
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggt 350  Q
    |||| |||||||| ||||||||| |||||| |||||  |||||||||||||||||    
T  4889701 aagatgctaaaatgaattatattgccacatcaaaagggtctccctagcacaaggt 4889647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 9484833 - 9484783
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||||||| |||||||| ||| |||||||||||||||| || |||||||||    
T  9484833 cattctttaccattgaatatcttgttatttctttcttttcaaatttcccac 9484783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 25392433 - 25392499
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||||||| ||||| | | |||||| |||||||||||| |||||||| ||||| ||| ||||||    
T  25392433 cattctttgcctttgaataacttgttatctctttctttccaaatttcccaagtagtagcaaaccaaa 25392499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 568
Target Start/End: Complemental strand, 26260827 - 26260693
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||| |||||||||||||| | |||||| |||||||| ||| | ||||  |  ||||| ||  |||| |||||||||| || ||||||||| ||| |     
T  26260827 atgataattgaagggaagagaagcaaacttcgccttcaaccacgtaaaagcaagagacttgatcatgtctaccacttgaagaactgagcattccttgacg 26260728  T
Q  534 ttgaaaatcctgttatttctttctttccatatttc 568  Q
    || || |  |||||||||||||| ||||| |||||    
T  26260727 ttaaacaatctgttatttctttccttccaaatttc 26260693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 571
Target Start/End: Complemental strand, 35503946 - 35503866
Alignment:
Q  491 cttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||||||| || ||  | ||  |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  35503946 cttaattttgtcaactacctgcgttataaagcactcgttgccattgaaaatcctgttatttctttctttccatatttccca 35503866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 438 - 572
Target Start/End: Complemental strand, 25845720 - 25845586
Alignment:
Q  438 tagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattga 537  Q
    ||||| ||||| ||||| |||||||| |||||||| ||| | ||||  | |||||||||||| |||||||| |||| |||||| || |||||||| || |    
T  25845720 tagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaaccacctgaacaattgaacaatctttgcctttaa 25845621  T
Q  538 aaatcctgttatttctttctttccatatttcccac 572  Q
    | |   |||| |||||||||||||| |||||||||    
T  25845620 ataatatgttgtttctttctttccaaatttcccac 25845586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 572
Target Start/End: Original strand, 44781768 - 44781819
Alignment:
Q  521 gcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||||||||| |||||||||| |||||||||||||||||||| |||||||||    
T  44781768 gcattctttgtcattgaaaattctgttatttctttctttccaaatttcccac 44781819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 441 - 588
Target Start/End: Complemental strand, 47161057 - 47160910
Alignment:
Q  441 ttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaa 540  Q
    ||||| |||||||| ||||||||  ||||||| ||| | ||||| ||| |||||||  | || |||||||| | |||||||| ||| |||  ||| ||||    
T  47161057 ttgaatggaagagaaggaaacttcaccttcaaccacttaaaagttaacaacttaatcctatccaccacttgcaaaattgagctttccttgggattaaaaa 47160958  T
Q  541 tcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    | |||||||| ||||| ||||| ||||||||||| || ||| ||||||    
T  47160957 ttctgttattcctttccttccaaatttcccacgttgtcgcaaaccaaa 47160910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 51346337 - 51346403
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||| |||||||| | ||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  51346337 cattctttaccattgaataacctgttaattctttctttccatatttctcacgcagtagcataccaaa 51346403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 586
Target Start/End: Complemental strand, 23050159 - 23050039
Alignment:
Q  466 ccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatat 565  Q
    ||||||| ||| | |||||| | |||||||| ||||| || || || ||||||||||| | ||||||||||||||  ||| |||||| ||||||||| ||    
T  23050159 ccttcaaccacgtgaaagtcgatgacttaatcttgtccactacctgcataattgagcaatatttgccattgaaaactctgatatttcattctttccaaat 23050060  T
Q  566 ttcccacgtagttgcatacca 586  Q
    || ||||  ||||||| ||||    
T  23050059 tttccacacagttgcaaacca 23050039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 488 - 571
Target Start/End: Complemental strand, 13043371 - 13043288
Alignment:
Q  488 cgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||||||| ||||| ||| |||  |||||||||||| |||| || | ||| || |||||||| ||||||||||||||    
T  13043371 cgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaacaacctattgtttctttccttccatatttccca 13043288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 488 - 571
Target Start/End: Complemental strand, 13051448 - 13051365
Alignment:
Q  488 cgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||||||| ||||| ||| |||  |||||||||||| |||| || | ||| || |||||||| ||||||||||||||    
T  13051448 cgacttaattttgtcgaccacctgattaaccgagcattctttgacattaaacaacctattgtttctttccttccatatttccca 13051365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 519 - 572
Target Start/End: Complemental strand, 39770902 - 39770849
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||| ||||| |||||||| |||||||||||| |||||||||| |||||||||    
T  39770902 gagcactctttaccattgaagatcctgttatttatttctttccaaatttcccac 39770849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 572
Target Start/End: Original strand, 20017500 - 20017583
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||||||| || || ||||| |||| | | |||||| ||||  ||||||| | ||||||||||||||| |||||||||||||||    
T  20017500 gacttaatcttttctaccacctgaaaattcgagcatactttatcattgaagagcctgttatttctttccttccatatttcccac 20017583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 534 - 572
Target Start/End: Original strand, 3857734 - 3857772
Alignment:
Q  534 ttgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  3857734 ttgaaaaccctgttatttctttctttccaaatttcccac 3857772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 14760363 - 14760413
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcc 569  Q
    |||||||| |||||||| || |||||||| |||||||||||||| ||||||    
T  14760363 gagcattcattgccattaaagatcctgttctttctttctttccaaatttcc 14760413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 571
Target Start/End: Complemental strand, 19596191 - 19596154
Alignment:
Q  534 ttgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  19596191 ttgaaaatcctgttatttctttcctcccatatttccca 19596154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 598
Target Start/End: Original strand, 45967110 - 45967159
Alignment:
Q  549 tttctttctttccatatttcccacgtagttgcataccaaagaacttgtaa 598  Q
    |||||||||||||||| ||||||||| |||||| |||||| ||| |||||    
T  45967110 tttctttctttccataattcccacgttgttgcaaaccaaataacctgtaa 45967159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 599
Target Start/End: Complemental strand, 9060785 - 9060674
Alignment:
Q  488 cgacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaa 587  Q
    |||||||||||| |||||||| || | ||||||||| | ||| | |||||| | ||| || ||||| ||||||||||| |||||| | |||||| |||||    
T  9060785 cgacttaattttatcaaccacctgcaaaattgagcaatgtttactattgaagagcctattgtttctctctttccatatctcccacattgttgcaaaccaa 9060686  T
Q  588 agaacttgtaaa 599  Q
    ||||| ||||||    
T  9060685 agaacctgtaaa 9060674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 459197 - 459263
Alignment:
Q  522 cattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    ||||||||||||||||| | |||| |||||| |||||| ||||||||||||| ||| ||||||||||    
T  459197 cattctttgccattgaataacctgatatttccttcttttcatatttcccacgcagtagcataccaaa 459263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 598
Target Start/End: Original strand, 39435531 - 39435640
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||| || |||||||| || | ||  |||||||||||| ||||||| | | ||||||||||||||||||| ||||| |||  | ||||| ||||||    
T  39435531 gacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaataacatgttatttctttctttccaaatttctcacacacttgcaaaccaaa 39435630  T
Q  589 gaacttgtaa 598  Q
    |||| |||||    
T  39435631 gaacctgtaa 39435640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 567
Target Start/End: Complemental strand, 6084153 - 6084081
Alignment:
Q  495 attttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatattt 567  Q
    |||||||| ||||| || |||||||||| ||||||  |||| |||||||| || |||||||||||||||||||    
T  6084153 attttgtcgaccacctgcataattgagctttcttttgcatttaaaatccttttgtttctttctttccatattt 6084081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 544 - 599
Target Start/End: Complemental strand, 16840267 - 16840212
Alignment:
Q  544 tgttatttctttctttccatatttcccacgtagttgcataccaaagaacttgtaaa 599  Q
    ||||||||||||||||||| |||||||||||||||||| |||| | ||| ||||||    
T  16840267 tgttatttctttctttccaaatttcccacgtagttgcaaaccagataacctgtaaa 16840212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 447763 - 447809
Alignment:
Q  526 ctttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||    
T  447763 ctttgccattgaatatcctgttgtttctttccttccatatttcccac 447809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 571
Target Start/End: Original strand, 8462536 - 8462672
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaagcacctcaaagtcaacgacttaattttgtcaaccacttgaataattgagcattctttgcca 533  Q
    |||||| |||||||||||||| | ||| || |||||||| ||| | || || |  |||||||| || |||||||| || | ||  || |||||||||||     
T  8462536 atgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctgcacaaccgaacattctttgcct 8462635  T
Q  534 ttgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||| ||| ||||||||||||||||| | ||||||||    
T  8462636 ttgaatatc-tgttatttctttctttctaaatttccca 8462672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 27342812 - 27342860
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatattt 567  Q
    |||||||||||| | |||||||| ||||||||||||| |||||||||||    
T  27342812 gagcattctttgaccttgaaaattctgttatttctttttttccatattt 27342860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 21524082 - 21524027
Alignment:
Q  298 gaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatg 353  Q
    ||||||||||| |||||||||||||||| ||||| | || |||| |||||||||||    
T  21524082 gaggctaaaatgaattatattaccacatcaaaaggtccttcctaacacaaggtatg 21524027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 513 - 571
Target Start/End: Complemental strand, 1590366 - 1590308
Alignment:
Q  513 ataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttccca 571  Q
    ||||| ||||||||||||   |||||| | ||||||||||||| |||||||||||||||    
T  1590366 ataatcgagcattctttgatcttgaaacttctgttatttctttttttccatatttccca 1590308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 21523936 - 21523898
Alignment:
Q  434 atgatagttgaagggaagagatggaaactttgccttcaa 472  Q
    |||||||||||||||||||||||||||||| || |||||    
T  21523936 atgatagttgaagggaagagatggaaacttcgctttcaa 21523898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 43776201 - 43776156
Alignment:
Q  527 tttgccattgaaaatcctgttatttctttctttccatatttcccac 572  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||||||    
T  43776201 tttgtcattgaatatcctattatttctttctttccaaatttcccac 43776156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 586
Target Start/End: Original strand, 64365 - 64462
Alignment:
Q  489 gacttaattttgtcaaccacttgaataattgagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcatacca 586  Q
    ||||||||||| || ||||| |||  |||||| |  || |||||||| || | ||||||||||||||||||||| ||||| |||||||||||| ||||    
T  64365 gacttaattttatctaccacctgaggaattgaactatccttgccattaaataacctgttatttctttctttccaaatttcacacgtagttgcaaacca 64462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 45120 - 45051
Alignment:
Q  519 gagcattctttgccattgaaaatcctgttatttctttctttccatatttcccacgtagttgcataccaaa 588  Q
    |||||||||||||||||||| | |||| ||||||||||||||| |||||| |||   |||||||||||||    
T  45120 gagcattctttgccattgaataacctgctatttctttctttccttatttctcacaccgttgcataccaaa 45051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 24725 - 24665
Alignment:
Q  296 aagaggctaaaataaattatattaccacataaaaagattctccctagcacaaggtatgcca 356  Q
    ||||| |||||  ||||||||||||||||| ||||| |||||||||||| |||| ||||||    
T  24725 aagagtctaaataaaattatattaccacatcaaaaggttctccctagcataaggcatgcca 24665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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