View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5937-Insertion-6 (Length: 820)
Name: NF5937-Insertion-6
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5937-Insertion-6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 771; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 9 - 819
Target Start/End: Original strand, 32569452 - 32570262
Alignment:
| Q |
9 |
cataaaaggcttgcttccacttctagcgccacctctactagttctgattggatgtcttcagcctctactttatctcagggtatgatccaatgtacatgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569452 |
cataaaaggcttgcttccacttctagcgccacctctactagttctgattggatgtcttcaacctctactttatctcagggtatgatccaatgtacatgga |
32569551 |
T |
|
| Q |
109 |
agcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaacagatgataaggcttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569552 |
agcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaacagatgataaggcttt |
32569651 |
T |
|
| Q |
209 |
tgactatgtgtatcagtttcacttaaacaagggaagtcagaagggtcgtgagattgctgatgatgatctgccgcttgttgggaagatgaatgtatcaacg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32569652 |
tgactatgtgtatcagtttcacttaaacaagggaagtcagaagggtcgtgagattgctgatgatgatttgccgcttgttgggaagatgaatgtatcaacg |
32569751 |
T |
|
| Q |
309 |
agtttcactctttgctcgaatagttgtcgagtaatggagaccgagttcacattattcaataacattgaagtttatgacaacagatcagagtattctcatc |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569752 |
agtttcactctttgctcgaatagctgtcgagtaatggagaccgagttcacattattccataacattgaagtttatgacaacagatcagagtattctcatc |
32569851 |
T |
|
| Q |
409 |
acatgaagaacaaggggctaaagaaaaaggtgtcgcaagttttcagaactaatccttcatcaaaacacagaacactctcaaggtttaacagatctggtgc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569852 |
acatgaagaacaaggggctaaagaaaaaggtgtcacaagttttcagaaccaatccttcatcaaaacacagaacactctcaaggtttaacagatctggtgc |
32569951 |
T |
|
| Q |
509 |
cgtagctgagagttgtccgtgggatccacaaattgatttattagatgctaatgttcctccaaattttgagatggcttccattgttgttaaagaccatctt |
608 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32569952 |
cgtagctgagagttgtctgtgggatccacaaattgatttattagatgctaatgttcctccgaattttgagatggcttccattgttgttaaagaccatctt |
32570051 |
T |
|
| Q |
609 |
ccttgtaataggccggaaaaaataggaggttggggcttaaaatttctcaacaaatctggcgtaaacaaaaccgcatcgccttctgaaagttgtaatcaaa |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570052 |
ccttgtaataggccggaaaaaataggaggttggggcttaaaatttctcaacaaatctggcgtaaacaaaaccgcatcgccttctgaaagttgtaatcaaa |
32570151 |
T |
|
| Q |
709 |
ataacgatgactgctcatcgagtatgagcattctgattccagcaggccttcatggtggacctagaaccagaaatggtggtccgtctagtctgatagatag |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570152 |
ataacgatgactgctcatcgagtatgagcattctgattccagcaggcctccatggtgggcctagaaccagaaatggtggtccgtctagtctgatagatag |
32570251 |
T |
|
| Q |
809 |
atggagatctg |
819 |
Q |
| |
|
||||||||||| |
|
|
| T |
32570252 |
atggagatctg |
32570262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 93 - 362
Target Start/End: Original strand, 32614418 - 32614683
Alignment:
| Q |
93 |
atccaatgtacatggaagcgagggttacctcattttattttttctgcggacgatcagaaagaggtttacgtggcaaaattgaggaaggtagtagagtcaa |
192 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||| | |||||||||||||||||||| | ||||| ||||||||| || |||| || | |
|
|
| T |
32614418 |
atccaatgtacatggaag-gagggtttcctcatttaattttttctgagcacgatcagaaagaggtttacatagcaaagttgaggaagatattagactcga |
32614516 |
T |
|
| Q |
193 |
cagatgataaggcttttgactatgtgtatcagtttcacttaaacaagggaagtcagaagggtcgtgagattgctgatgatgatctgccgcttgttgggaa |
292 |
Q |
| |
|
|| ||||||||| ||| |||| ||||||||| |||||||||||| || || | || ||||||||||||||||| |||||| |||||| |||| |||| |
|
|
| T |
32614517 |
catatgataaggttttggact--gtgtatcagcttcacttaaacagggcaaaaga-aatggtcgtgagattgctgacgatgatttgccgcctgttaggaa |
32614613 |
T |
|
| Q |
293 |
gatgaatgtatcaacgagtttcactctttgctcgaatagttgtcgagtaatggagaccgagttcacatta |
362 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32614614 |
gatgaatgtatcaacgagtttcactttttgctcgaatagttgtcgagtaatggagacagagttcacatta |
32614683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 601 - 819
Target Start/End: Original strand, 32614688 - 32614907
Alignment:
| Q |
601 |
accatcttccttgtaataggccggaaaa-aataggaggttggggcttaaaatttctcaacaaatctggcgtaaacaaaaccgcatcgccttctgaaagtt |
699 |
Q |
| |
|
||||| |||||| ||||||| | ||||| |||||||| | |||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||| ||| |
|
|
| T |
32614688 |
accatattccttttaataggacagaaaaaaataggagataggggcttaaaatttctaaacaaatctggtgtaaataaaaccacatcgccttctgaatgtt |
32614787 |
T |
|
| Q |
700 |
gtaatcaaaataacgatgactgctcatcgagtatgagcattctga-ttccagcaggccttcatggtggacctagaaccagaaatggtggtccgtctagtc |
798 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||||||||||| |||||| |||| |||||||||| | |||| |||||||| ||| |||||||||| |
|
|
| T |
32614788 |
gtaatcaatataatgatgcctgctcatcgagtatgagcattctgatttccag-aggcgttcatggtgggcttagagccagaaattgtgtcccgtctagtc |
32614886 |
T |
|
| Q |
799 |
tgatagatagatggagatctg |
819 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
32614887 |
tgatagatagacggtgatctg |
32614907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 662
Target Start/End: Original strand, 32594933 - 32595008
Alignment:
| Q |
587 |
cattgttgttaaagaccatcttccttgtaataggccggaaaaaataggaggttggggcttaaaatttctcaacaaa |
662 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||||||||||||| || || ||| |||||||||||||| |
|
|
| T |
32594933 |
cattgttgtaaaagaccatcttccttgtaatagactagaaaaaataggaggctgtggattagaatttctcaacaaa |
32595008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 663
Target Start/End: Original strand, 16926766 - 16926871
Alignment:
| Q |
558 |
aatgttcctccaaattttgagatggcttccattgttgttaaagaccatcttccttgtaataggccggaaaaaataggaggttggggcttaaaatttctca |
657 |
Q |
| |
|
|||||||| ||||||||||| | | | | |||||||| ||||| ||| |||| | |||| | | |||||| ||||||||||||| | ||||||||||| |
|
|
| T |
16926766 |
aatgttccaacaaattttgaggttggtgctattgttgtcaaagaacatgttccatttaattgtcttgaaaaagtaggaggttggggatcaaaatttctca |
16926865 |
T |
|
| Q |
658 |
acaaat |
663 |
Q |
| |
|
|||||| |
|
|
| T |
16926866 |
acaaat |
16926871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University