View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5937-Insertion-8 (Length: 714)

Name: NF5937-Insertion-8
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5937-Insertion-8
NF5937-Insertion-8
[»] chr7 (11 HSPs)
chr7 (9-714)||(30278685-30279391)
chr7 (205-278)||(31251788-31251861)
chr7 (159-256)||(5758779-5758876)
chr7 (161-226)||(48693146-48693211)
chr7 (181-256)||(47086879-47086955)
chr7 (161-228)||(3557104-3557170)
chr7 (304-339)||(16698461-16698496)
chr7 (304-339)||(17672697-17672732)
chr7 (304-339)||(35851910-35851945)
chr7 (305-339)||(5038182-5038216)
chr7 (306-339)||(25683716-25683749)
[»] chr3 (9 HSPs)
chr3 (156-251)||(20844736-20844831)
chr3 (204-257)||(53007027-53007080)
chr3 (166-285)||(42980896-42981013)
chr3 (161-228)||(46786908-46786974)
chr3 (181-227)||(39400132-39400178)
chr3 (200-257)||(41877192-41877249)
chr3 (177-251)||(17647750-17647823)
chr3 (297-339)||(30670545-30670587)
chr3 (204-249)||(15513425-15513470)
[»] chr8 (4 HSPs)
chr8 (177-257)||(32049067-32049147)
chr8 (177-256)||(38276396-38276475)
chr8 (177-251)||(10177150-10177223)
chr8 (158-227)||(5995202-5995270)
[»] chr5 (4 HSPs)
chr5 (158-229)||(35446951-35447021)
chr5 (206-280)||(8463002-8463076)
chr5 (157-227)||(9828284-9828353)
chr5 (158-227)||(37442504-37442570)
[»] scaffold0219 (1 HSPs)
scaffold0219 (177-278)||(13356-13456)
[»] chr6 (3 HSPs)
chr6 (177-278)||(26219814-26219916)
chr6 (161-227)||(28992363-28992428)
chr6 (158-226)||(7271651-7271717)
[»] chr2 (8 HSPs)
chr2 (200-283)||(17296664-17296747)
chr2 (196-257)||(18694419-18694480)
chr2 (158-218)||(14994746-14994805)
chr2 (158-226)||(36184327-36184394)
chr2 (177-228)||(44723708-44723759)
chr2 (161-229)||(29191785-29191852)
chr2 (158-228)||(22296872-22296941)
chr2 (204-246)||(30481656-30481698)
[»] chr1 (12 HSPs)
chr1 (158-226)||(44061376-44061443)
chr1 (177-256)||(5953347-5953426)
chr1 (161-235)||(35938326-35938399)
chr1 (167-227)||(622845-622904)
chr1 (176-228)||(27663934-27663985)
chr1 (306-339)||(31847321-31847354)
chr1 (205-257)||(1031157-1031209)
chr1 (159-227)||(43908994-43909061)
chr1 (203-246)||(25485025-25485068)
chr1 (203-254)||(39126981-39127032)
chr1 (158-228)||(9978895-9978964)
chr1 (158-227)||(50878772-50878840)
[»] chr4 (7 HSPs)
chr4 (204-254)||(43115555-43115605)
chr4 (196-285)||(40981058-40981147)
chr4 (196-265)||(54026960-54027029)
chr4 (304-339)||(37709955-37709990)
chr4 (200-283)||(54023646-54023729)
chr4 (204-256)||(24254862-24254915)
chr4 (240-285)||(54026971-54027016)
[»] scaffold0229 (1 HSPs)
scaffold0229 (205-257)||(21995-22047)
[»] scaffold0110 (1 HSPs)
scaffold0110 (204-247)||(31357-31400)


Alignment Details
Target: chr7 (Bit Score: 655; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 9 - 714
Target Start/End: Complemental strand, 30279391 - 30278685
Alignment:
Q  9 caaagtgcatgatataacactatagtaagttgatcttaagtatttatacgcaaacatttagaaaaggacaaaatttgtacaaacaaaagcaataagttta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30279391 caaagtgcatgatataacactatagtaagttgatcttaagtatttatacgcaaacatttagaaaaggacaaaaattgtacaaacaaaagcaataagttta 30279292  T
Q  109 ttcctttgaggtcattttatttatggtgcgtgtactagagaagg-tcatagagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30279291 ttcctttgaggtcattttatttatggtgcgtgtactagagaagggtcacagagaattgatcttctcccatttgtttttgctcattcacgtgtctacgtga 30279192  T
Q  208 gttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactcacgttgaatattgttgggtatttctcaggg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30279191 gttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtggagcgtggcttaactcacgttgaatattgttgggtatttctcaggg 30279092  T
Q  308 aatgagcaattttgaaagggagaagagcaattctcagggtttcattctcgattgggcatacgtcagacccaatcaaaatggacattattgtgagggcatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30279091 aatgagcaattttgaaagggagaagagcaattctcagggtttcattctcgattgggcatacgtcagacccaatcaaaatggacattactgtgagggcatg 30278992  T
Q  408 cgtgagagacactacactatcatcatacttgaatgtaatctctcgacagttgagtgccatatgatgaagatcgtagggtgatccatcaatctcaacatga 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30278991 cgtgagagacactacactatcatcatacttgaatgtaatctctcgacagttgagcgccatatgatgaagatcgtagggtgatccatcaatctcaacatga 30278892  T
Q  508 atccctcattgacctaaacaagtttttcattatcttttttgaaatctacatataaatggacctttgttataggaaaaatgtacgcaactaatatgttaaa 607  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30278891 atccctcattgacctaaataagtttttccttatcttttttgaaatctacatataaatggacctttgttataggaaaaatgtacgcaactaatatgttaaa 30278792  T
Q  608 cctatcacccatctgatccaaaaaatgatttgagtattggtgtttttgcaggtacaagacccctatccgggagaactgccctggtcctcctccgcgctta 707  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30278791 cctatcacctatctgattcaaaaattgatttgagtattggtgtttttgcaggtacaagacccctatccgggagaactgccctggtcctcctccgcgctta 30278692  T
Q  708 actccaa 714  Q
    |||||||    
T  30278691 actccaa 30278685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 31251788 - 31251861
Alignment:
Q  205 tgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactca 278  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||| ||||| ||||||||||  ||||||||    
T  31251788 tgagttaactcacgctgaaaaatacccaacatgagttaactcacgttgaaaaaagtcgagcgtgagttaactca 31251861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 5758779 - 5758876
Alignment:
Q  159 agaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg-tccaacttgagttaactcacgttaaaaa 256  Q
    ||||||| ||||||||  ||||||||||||||||| |||| |||||| ||||||||||||||||||||||  |  || |||||||||| ||||||||||    
T  5758779 agaattgctcttctcccttttgtttttgctcattcccgtg-ctacgttagttaactcacgctgaaaaatgcacttacatgagttaacttacgttaaaaa 5758876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 48693146 - 48693211
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaa 226  Q
    ||||| ||||||||  ||||||||| ||||||||||||| | |||||||||||||||| |||||||    
T  48693146 aattgttcttctcccttttgtttttactcattcacgtgtatgcgtgagttaactcacgttgaaaaa 48693211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 47086879 - 47086955
Alignment:
Q  181 tttttgctcattcacgtgtctacgtgagttaactcacgctg-aaaaatgtccaacttgagttaactcacgttaaaaa 256  Q
    ||||||||||||  |||| | |||||||||||||||||||| |||||| ||| || |||||||||||||||| ||||    
T  47086879 tttttgctcatttccgtgcccacgtgagttaactcacgctgaaaaaatatcctacgtgagttaactcacgttgaaaa 47086955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 3557104 - 3557170
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    ||||| |||||||| |||| |||||||| |||  |||| |||||||||||||||||||||||||||||    
T  3557104 aattgttcttctcccatttatttttgcttattaccgtg-ctacgtgagttaactcacgctgaaaaatg 3557170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 16698461 - 16698496
Alignment:
Q  304 agggaatgagcaattttgaaagggagaagagcaatt 339  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16698461 agggaatgagcaattttaaaagggagaagagcaatt 16698496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 17672697 - 17672732
Alignment:
Q  304 agggaatgagcaattttgaaagggagaagagcaatt 339  Q
    ||||||||||||||||| ||||||||||||||||||    
T  17672697 agggaatgagcaattttaaaagggagaagagcaatt 17672732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Complemental strand, 35851945 - 35851910
Alignment:
Q  304 agggaatgagcaattttgaaagggagaagagcaatt 339  Q
    |||||||||||||||||||||| |||||||||||||    
T  35851945 agggaatgagcaattttgaaagagagaagagcaatt 35851910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 5038182 - 5038216
Alignment:
Q  305 gggaatgagcaattttgaaagggagaagagcaatt 339  Q
    ||||||||||||||||| |||||||||||||||||    
T  5038182 gggaatgagcaattttggaagggagaagagcaatt 5038216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 25683749 - 25683716
Alignment:
Q  306 ggaatgagcaattttgaaagggagaagagcaatt 339  Q
    |||||| |||||||||||||||||||||||||||    
T  25683749 ggaatgggcaattttgaaagggagaagagcaatt 25683716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 20844736 - 20844831
Alignment:
Q  156 tagagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgtt 251  Q
    |||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||    
T  20844736 tagaaaattgctcttctcccttttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatatccagcgtaagttaactcacgtt 20844831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 53007080 - 53007027
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  53007080 gtgagttaactcacgcagaaaaatgtccaacgtgagttaactcatgttaaaaaa 53007027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 42980896 - 42981013
Alignment:
Q  166 atcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagc 265  Q
    |||||||||  ||||||||||||||||| | || |||||||||||| |||| ||| |||||||||| || ||| |||||||||||| ||||  ||||| |    
T  42980896 atcttctcccttttgtttttgctcattctcatgcctacgtgagttagctcatgct-aaaaatgtcctacgtga-ttaactcacgttgaaaatagtcgaac 42980993  T
Q  266 gtggcttaactcacgttgaa 285  Q
    |||  ||| |||||||||||    
T  42980994 gtgagttagctcacgttgaa 42981013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 46786974 - 46786908
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    ||||| |||||||| |||||||||||||||| || ||| |||| |||||||||||||| |||||||||    
T  46786974 aattgctcttctcccatttgtttttgctcatacatgtg-ctacttgagttaactcacgttgaaaaatg 46786908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 39400178 - 39400132
Alignment:
Q  181 tttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  39400178 ttttttctcattcacgtgcctacgtgagttaactcacgctaaaaaat 39400132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 41877249 - 41877192
Alignment:
Q  200 ctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    |||| ||||||||||||||||||||||||| |||| |||||||| ||| ||| |||||    
T  41877249 ctacatgagttaactcacgctgaaaaatgttcaacatgagttaattcatgttgaaaaa 41877192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 17647823 - 17647750
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgtt 251  Q
    ||||||||||||||||| ||||| |||||||||||| ||||| ||||||    || || ||||||||||||||||    
T  17647823 tttgtttttgctcattctcgtgt-tacgtgagttaaatcacgttgaaaatgcacctacgtgagttaactcacgtt 17647750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 30670587 - 30670545
Alignment:
Q  297 atttctcagggaatgagcaattttgaaagggagaagagcaatt 339  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  30670587 atttttcaggaaatgagcaattttgtaagggagaagagcaatt 30670545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 15513470 - 15513425
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgtccaacttgagttaactcacg 249  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||||||    
T  15513470 gtgagttaattcacgttgaaaaatgtcgaacgtgagttaactcacg 15513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 32049067 - 32049147
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  32049067 tttgtttttgcttattcacgtgtctacgtgagttaactcacgctgaaaaatgtccagcgtaagttaactcacgttgaaaaa 32049147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 38276475 - 38276396
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaa 256  Q
    |||||||||||||||||||||| |||| ||||| |||||| |||||||||||| |  | |||||||||||||||| ||||    
T  38276475 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaaa 38276396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 10177150 - 10177223
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgtt 251  Q
    ||||||||||||||||||| || ||||| |||||||||| || |||||||||  |||| ||||||||||||||||    
T  10177150 tttgtttttgctcattcacatgcctacg-gagttaactcgcgttgaaaaatgctcaacgtgagttaactcacgtt 10177223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 5995270 - 5995202
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    |||||||| |||||||| || | |||||||||||||| || || ||||||||||||||||||||||||||    
T  5995270 gagaattgctcttctcccatctttttttgctcattcatgt-tcaacgtgagttaactcacgctgaaaaat 5995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 35446951 - 35447021
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgt 229  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  35446951 gagaattgctcttctcccatttgtttttgctcattcacgtg-ctacgtgagttaactcacgcttaaaaatgt 35447021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 8463002 - 8463076
Alignment:
Q  206 gagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactcacg 280  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||||||    
T  8463002 gagttaactcatgctgaaaaatgtccaacctgagttaactcacgttgaaaaaagtcgagcgtgagttaactcacg 8463076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 9828353 - 9828284
Alignment:
Q  157 agagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    ||||||||| |||||||| ||  |||||||||||||  ||  ||||||||| |||||||||||||||||||    
T  9828353 agagaattgttcttctcctatcagtttttgctcatttccgc-tctacgtgatttaactcacgctgaaaaat 9828284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 37442504 - 37442570
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    |||||||| |||||||  || ||||||||||||||| |||  |||| |||||||||||||||||||||||    
T  37442504 gagaattgttcttctc--atctgtttttgctcattcccgtc-ctacatgagttaactcacgctgaaaaat 37442570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 13456 - 13356
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaact 276  Q
    ||||||||||| |||| |||| ||||  |||||||||||| |||||||||||| || | |||| ||||||||||||||||| ||||||||||  ||||||    
T  13456 tttgtttttgcacatttacgtatctagttgagttaactcatgctgaaaaatgttcagcgtgagctaactcacgttaaaaaa-gtcgagcgtgagttaact 13358  T
Q  277 ca 278  Q
    ||    
T  13357 ca 13356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 26219916 - 26219814
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctg--aaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaa 274  Q
    |||||||||||||||||| ||| |||| |||||||||||| ||||  |||||||| || | |||||||| ||||||||||||| ||||||||||  ||||    
T  26219916 tttgtttttgctcattcatgtgcctacttgagttaactcatgctgaaaaaaatgttcatcgtgagttaattcacgttaaaaaa-gtcgagcgtgagttaa 26219818  T
Q  275 ctca 278  Q
    ||||    
T  26219817 ctca 26219814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 28992363 - 28992428
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    ||||| |||||||| || ||||||| ||||||| | | |||||||||||||||||||||||||||||    
T  28992363 aattgctcttctcccatctgtttttactcattccc-tctctacgtgagttaactcacgctgaaaaat 28992428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 7271651 - 7271717
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaa 226  Q
    |||||||| |||||||| |||||||||||||||||| | || |||| ||||||||||||| ||||||||    
T  7271651 gagaattgctcttctcccatttgtttttgctcattctcatg-ctac-tgagttaactcacactgaaaaa 7271717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 17296664 - 17296747
Alignment:
Q  200 ctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactcacgttg 283  Q
    |||| |||||||| ||||||||||||||| ||||  |||||||||||||||| ||||| | |||||||  ||||||||||||||    
T  17296664 ctacatgagttaaatcacgctgaaaaatgcccaatgtgagttaactcacgttgaaaaaagccgagcgtaacttaactcacgttg 17296747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 18694480 - 18694419
Alignment:
Q  196 gtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||| |||||| |||||    
T  18694480 gtgtctgcgtgagttaactcacgctgaaaaatgtccagcatgagttaacccacgttgaaaaa 18694419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 14994746 - 14994805
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacg 218  Q
    |||||||| |||||||| |||||||||||||||||| ||||  ||||||||||||||||||    
T  14994746 gagaattgctcttctcccatttgtttttgctcattcccgtg-gtacgtgagttaactcacg 14994805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 36184394 - 36184327
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaa 226  Q
    |||||||| ||||| || |||||||||||||||||| |||| |||  ||||||||||||||||||||||    
T  36184394 gagaattgctcttcacccatttgtttttgctcattctcgtg-ctatatgagttaactcacgctgaaaaa 36184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 44723759 - 44723708
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  44723759 tttgtttttgctcactcacgtgcctacgtgagttaacttacgctgcaaaatg 44723708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 29191785 - 29191852
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgt 229  Q
    ||||| |||||||| |||||||||||||||||| | || ||| ||||||||||||| |||| |||||||    
T  29191785 aattgctcttctcccatttgtttttgctcattctcatg-ctatgtgagttaactcatgctgcaaaatgt 29191852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 22296941 - 22296872
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    ||||||||||||||||| ||||| |||||||||||  ||| || |||| | |||||||||| |||||||||    
T  22296941 gagaattgatcttctcccatttgattttgctcatttccgt-tcaacgtaacttaactcacgttgaaaaatg 22296872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 30481698 - 30481656
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgtccaacttgagttaactc 246  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||    
T  30481698 gtgagttaactcacgctaaaaaatgtcgaacatgagttaactc 30481656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 44061443 - 44061376
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaa 226  Q
    |||||||| ||||||||  ||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  44061443 gagaattgctcttctcccgtttgtttttgctcattcccgtg-ctacatgagttaactcacgctgaaaaa 44061376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 5953426 - 5953347
Alignment:
Q  177 tttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaa 256  Q
    |||||||||  |||||||| || |||||||||||||||||   ||||||||||||| |||||||||||||| ||| ||||    
T  5953426 tttgttttttatcattcacatgcctacgtgagttaactcatattgaaaaatgtccagcttgagttaactcaagttgaaaa 5953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 35938326 - 35938399
Alignment:
Q  161 aattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtccaact 235  Q
    ||||| |||||||| |||||||||||||||||| |||| |||| | ||||||||||| |||||||||||| ||||    
T  35938326 aattgctcttctcccatttgtttttgctcattctcgtg-ctacataagttaactcaccctgaaaaatgtctaact 35938399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 622845 - 622904
Alignment:
Q  167 tcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||| ||||||||    
T  622845 tcttctcccatttgtttttgctcattcccgtc-ctacgtgagttaactcacgttgaaaaat 622904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 27663934 - 27663985
Alignment:
Q  176 atttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  27663934 atttgtttttgctcattcccgtg-ctacgtgagctaactcacgctgaaaaatg 27663985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 31847354 - 31847321
Alignment:
Q  306 ggaatgagcaattttgaaagggagaagagcaatt 339  Q
    ||||||||||||||||||||||||||||||||||    
T  31847354 ggaatgagcaattttgaaagggagaagagcaatt 31847321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 1031209 - 1031157
Alignment:
Q  205 tgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    ||||||||||||||||||||||||| || | |||||||||||| ||| |||||    
T  1031209 tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaaaaa 1031157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 43908994 - 43909061
Alignment:
Q  159 agaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    ||||||| |||||||| ||  ||||||||||||||  || ||||||||||||| |||||||||||||||    
T  43908994 agaattgctcttctcccatcagtttttgctcattcctgt-tctacgtgagttatctcacgctgaaaaat 43909061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 25485025 - 25485068
Alignment:
Q  203 cgtgagttaactcacgctgaaaaatgtccaacttgagttaactc 246  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||    
T  25485025 cgtgagttaactcacgctggaaaatgtcgaacgtgagttaactc 25485068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 39126981 - 39127032
Alignment:
Q  203 cgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaa 254  Q
    |||||||||||||||||||||||||||| | | |||||||| ||||| ||||    
T  39126981 cgtgagttaactcacgctgaaaaatgtcgagcgtgagttaaatcacgctaaa 39127032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 9978964 - 9978895
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatg 228  Q
    |||||||| |||||| | |||| ||||||||||||| | |  |||||||||||||||||| ||||||||||    
T  9978964 gagaattgctcttcttccatttatttttgctcattcccata-ctacgtgagttaactcacactgaaaaatg 9978895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 50878840 - 50878772
Alignment:
Q  158 gagaattgatcttctccgatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 227  Q
    |||||||| |||||||| ||||||||||||  |||| |||| |||||||||||| || | ||||||||||    
T  50878840 gagaattgctcttctcccatttgtttttgcctattctcgtg-ctacgtgagttatcttatgctgaaaaat 50878772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 43115605 - 43115555
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaa 254  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  43115605 gtgagttaactcacgctgaaaaatgtcgaacttaagttaactcacgctaaa 43115555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 40981058 - 40981147
Alignment:
Q  196 gtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactcacgttgaa 285  Q
    |||||| |||||||||||| ||||| |||| |||||||| | |||||| ||| ||| ||||| || |||||||  ||||||||| |||||    
T  40981058 gtgtctgcgtgagttaacttacgctaaaaagtgtccaacataagttaaatcatgttgaaaaaagttgagcgtgagttaactcacattgaa 40981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 54027029 - 54026960
Alignment:
Q  196 gtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagc 265  Q
    |||||||| | | |||||||||||| ||||||||||| | ||| |||||||||||| ||||| |||||||    
T  54027029 gtgtctacataaattaactcacgctaaaaaatgtccagcatgacttaactcacgttgaaaaaagtcgagc 54026960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 37709955 - 37709990
Alignment:
Q  304 agggaatgagcaattttgaaagggagaagagcaatt 339  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37709955 agggaatgagcaattttcaaagggagaagagcaatt 37709990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 54023729 - 54023646
Alignment:
Q  200 ctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaatgtcgagcgtggcttaactcacgttg 283  Q
    |||| |||||||| ||||| | ||||||||||||| ||||||| ||||| || ||||| | ||| ||||  |||||||||||||    
T  54023729 ctacatgagttaattcacgttaaaaaatgtccaacatgagttatctcacatttaaaaaagccgaacgtgagttaactcacgttg 54023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 24254862 - 24254915
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgt-ccaacttgagttaactcacgttaaaaa 256  Q
    ||||||||||| |||||| ||||| | || ||||||||||||||||||||||||    
T  24254862 gtgagttaactaacgctgcaaaatatacccacttgagttaactcacgttaaaaa 24254915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 54027016 - 54026971
Alignment:
Q  240 ttaactcacgttaaaaaatgtcgagcgtggcttaactcacgttgaa 285  Q
    |||||||||| ||||||||||| ||| || ||||||||||||||||    
T  54027016 ttaactcacgctaaaaaatgtccagcatgacttaactcacgttgaa 54026971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 22047 - 21995
Alignment:
Q  205 tgagttaactcacgctgaaaaatgtccaacttgagttaactcacgttaaaaaa 257  Q
    ||||||||||||||||||||||||| || | |||||||||||| ||| |||||    
T  22047 tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaaaaa 21995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 31400 - 31357
Alignment:
Q  204 gtgagttaactcacgctgaaaaatgtccaacttgagttaactca 247  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||    
T  31400 gtgagttaactcacgctgaaaaatgccgaacgtgagttaactca 31357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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