View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5937-Insertion-9 (Length: 522)
Name: NF5937-Insertion-9
Description: NF5937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5937-Insertion-9 |
 | |
|
| [»] scaffold0038 (4 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 28227217 - 28227683
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28227217 |
atggataggttgcagaaatggaagatggctcttactcaaactgctaacttctctggccaccaaatcaatcctaggtaccgtagttcactcatgttttaca |
28227316 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28227317 |
ttcttacatatgtcatacttctttaatattctattttctaactatttcatctcactatttaaattgaaaatattatttttattcttaacaagtttaa-tt |
28227415 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28227416 |
acttgtatgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatgattgtgaatttgtgatgcatttactcaaa-ttatttga |
28227514 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28227515 |
ttgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctg |
28227614 |
T |
|
| Q |
409 |
atggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaagcacaga |
477 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28227615 |
ttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacaga |
28227683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 467
Target Start/End: Original strand, 28325744 - 28326199
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||| |||| | ||||| ||| ||||||| |
|
|
| T |
28325744 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctacttaactaatgttttgtg |
28325843 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||| | ||||||| || || |||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
28325844 |
ttcttacatat---atatttctttaattttctattttctaaccgattcatcttacagttgaaattggaaatattaattttattcttaacaagtgtaagtt |
28325940 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| |||| || | |||||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28325941 |
acttgtatgtcaaaacaatatttgaattgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttga |
28326040 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||||||||||||| |||| | ||||||| | |||||||||| ||||||| ||| |||||| |
|
|
| T |
28326041 |
ttgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctg |
28326140 |
T |
|
| Q |
409 |
atggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggt |
467 |
Q |
| |
|
||| |||| |||||| ||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
28326141 |
taggtctcgagtctaggatcctagaagtaaattcacttatagatgttggatctaatggt |
28326199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 28181381 - 28181842
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28181381 |
atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccaccaaatcaatcctaggtaccgtagtgcactcatgttttaca |
28181480 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
||| ||||| || ||| ||||| ||| |||||||||| |||||||| |||| | || |||| | ||||||| ||||||||||||||||| |||| | |
|
|
| T |
28181481 |
ttcaaacataggtgatatttcttgaatgttctattttcgaactgttttatcttatagttgaaataggtaatattaattttattcttaacaagtgtaaggt |
28181580 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcattta-ctcaaacttatttg |
307 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||| | |||| ||||| |||| |||||||||||||| |
|
|
| T |
28181581 |
acttgtatgtcaaatcaatatttgaattgtatt-atacaactattattaa-aaattgatgtggttgagcatttatgatgtattttgctcaaacttatttg |
28181678 |
T |
|
| Q |
308 |
attgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccct |
407 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||| |||||||||||||| || || || ||||||||| |||||||||| ||||||||||| || | |
|
|
| T |
28181679 |
attgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatgttgccgattactat |
28181778 |
T |
|
| Q |
408 |
gatggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
| |||| |||| |||||||||||||| ||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
28181779 |
gttggtctcgagtctagggtcctaaaagtaaattcatttctggatgtcggatctaatggtgaag |
28181842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 222 - 471
Target Start/End: Original strand, 28185869 - 28186118
Alignment:
| Q |
222 |
aacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttgattgggtaggaatg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
28185869 |
aacaatatttgaattgtatttatacaactattattaataaattgatgtggctgtgaatttgtgatgcacttaatcaaacttattttattgggtaggaatg |
28185968 |
T |
|
| Q |
322 |
gctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctgatggtgtcgaatc |
421 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||| |||| || |
|
|
| T |
28185969 |
gctatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgatttccctgttggtatcgagtc |
28186068 |
T |
|
| Q |
422 |
tagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28186069 |
tagggttctaaaagtaaattcacttatggattttggatctaatggtgaag |
28186118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 471
Target Start/End: Complemental strand, 28297633 - 28297197
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| || |
|
|
| T |
28297633 |
atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtaccccacttcactcatgttttgca |
28297534 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||| | | ||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
28297533 |
ttctta------------------aatattctattttccaaccgtttcatcatattgtttaaatagaaaatattatttctattcttaacaagtgaaagtt |
28297452 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
| || | |||||||||||||||||| ||||||| ||||||| || | || ||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28297451 |
attt-tatgtcaaaacaatatttgatttgtattcatacaaccat-------acatggatcttattgtatatttgtgatgcatttactcaaacttatttga |
28297360 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||| ||||||||| ||||| | ||||||||| ||||||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||||| |||| | |
|
|
| T |
28297359 |
ttggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttgccgattaccccg |
28297260 |
T |
|
| Q |
409 |
atggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
|||| || | |||||||||||||| ||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
28297259 |
ttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaag |
28297197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 28514440 - 28514876
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| || |
|
|
| T |
28514440 |
atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtaccccacttcactcatgttttgca |
28514539 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||| | | ||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
28514540 |
ttctta------------------aatattctattttccaaccgtttcatcatattgtttaaatagaaaatattatttctattcttaacaagtgaaagtt |
28514621 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
| || | |||||||||||||||||| ||||||| ||||||| || | || ||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28514622 |
attt-tatgtcaaaacaatatttgatttgtattcatacaaccat-------acatggatcttattgtatatttgtgatgcatttactcaaacttatttga |
28514713 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||| ||||||||| ||||| | ||||||||| ||||||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||||| |||| | |
|
|
| T |
28514714 |
ttggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttgccgattaccccg |
28514813 |
T |
|
| Q |
409 |
atggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
|||| || | |||||||||||||| ||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
28514814 |
ttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaag |
28514876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 28243071 - 28243489
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||| |||| | |||||||| |||| |||||||||| || |
|
|
| T |
28243071 |
atggagaggttgcagaaatggaagagtgctctaactcaaacagctaacttctctggccaccatttcagttctaggtacaccacttaactcatgtttagca |
28243170 |
T |
|
| Q |
109 |
ttcttacatatgt--------catacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaag |
200 |
Q |
| |
|
|||||||||| | || | ||||||||| |||||||||||||| ||||||| || || |||| |||||||||| ||||||||||||||| |
|
|
| T |
28243171 |
ttcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatagaaaatattaaatttattcttaacaag |
28243270 |
T |
|
| Q |
201 |
tttaagttacttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaac |
300 |
Q |
| |
|
| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
28243271 |
tgtaagttacttgtatg-caaaacaatatttgaattgtatttatacaactattatcaatatat--------------------gatgcatttactcaaac |
28243349 |
T |
|
| Q |
301 |
ttatttgattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccga |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||| ||||||||||| |||||| |||| | ||| ||||||| ||||||| || ||||||| || |
|
|
| T |
28243350 |
ttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctga |
28243449 |
T |
|
| Q |
401 |
taaccctgatggtgtcgaatctagggtcctaaacgtaaat |
440 |
Q |
| |
|
| |||||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
28243450 |
ttaccctgttggtctcgagtctagggtcctaaaagtaaat |
28243489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 28185633 - 28185846
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatccta---ggtaccgtacttcactcatgtttt |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
28185633 |
atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctgctgggtaccccacttcactcatgtttt |
28185732 |
T |
|
| Q |
106 |
acattcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaa |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||||||| || ||||||| ||| ||||| |||||||||||||||||| ||| |
|
|
| T |
28185733 |
acattcttacatatgtcatatctctttaatattctattatcttactgtttcatcttacggtttaaatagaatatattctttttattcttaacaagtgtaa |
28185832 |
T |
|
| Q |
206 |
gttacttgtttgtc |
219 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
28185833 |
gttacttgtatgtc |
28185846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 28234830 - 28235290
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| ||||| | ||| ||||| |||| || |
|
|
| T |
28234830 |
atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccatttcaatccagggtacaccaattccctcatatttttca |
28234929 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattct--taacaagtttaag |
206 |
Q |
| |
|
||| |||| || | || ||||||||| |||||||||| |||||||| | |||||| | ||||| |||||||| | | |||||||| |
|
|
| T |
28234930 |
ttcatacaaatataatgtttctttaattctctattttctggacgtttcatcattcagtttaaagaggaaataaattttttattttattttatagtttaag |
28235029 |
T |
|
| Q |
207 |
ttacttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttattt |
306 |
Q |
| |
|
||||||| | ||||| || ||||||||||| |||||||| ||||||||||| | ||| || || ||||||||||||||| || | |||||||| |
|
|
| T |
28235030 |
gtacttgtatatcaaacgaaaatttgaattgttattatacaattattattaatacaacgatgtgactg--aatttgtgatgcattaaccaagacttattt |
28235127 |
T |
|
| Q |
307 |
gattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccc |
406 |
Q |
| |
|
| || |||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
28235128 |
g--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccc |
28235225 |
T |
|
| Q |
407 |
tgatggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
|| |||| || | |||||||||||||| |||| |||| | |||||||||||||||||||||||| |
|
|
| T |
28235226 |
tgttggtctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaag |
28235290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 27337985 - 27337924
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| |||| |
|
|
| T |
27337985 |
atggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca |
27337924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 27398725 - 27398664
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||| |||| |
|
|
| T |
27398725 |
atggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca |
27398664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 28098273 - 28098188
Alignment:
| Q |
13 |
agaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactc |
98 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||| | |||||||| || ||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
28098273 |
agaggctgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccatttcaatcctaggtaccatacttcactc |
28098188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 396
Target Start/End: Complemental strand, 28098082 - 28097975
Alignment:
| Q |
289 |
atttactcaaacttatttgattgggtaggaatggctatgagtttgagtttat-cgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctt |
387 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||| ||||| || |||||||| || ||| ||||||||||||||||| ||||| | |||||||| | || |
|
|
| T |
28098082 |
atttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaa-atagtcaaatatgtatccaacaaattgaatcatgtccttt |
28097984 |
T |
|
| Q |
388 |
tacatgttg |
396 |
Q |
| |
|
||||||||| |
|
|
| T |
28097983 |
tacatgttg |
28097975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 27214687 - 27214745
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggcta |
67 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||| |||||||||| |||||||| |
|
|
| T |
27214687 |
atggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggcta |
27214745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 27234541 - 27234483
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggcta |
67 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||| |||||||||| |||||||| |
|
|
| T |
27234541 |
atggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggcta |
27234483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 31284555 - 31284616
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| |||| |
|
|
| T |
31284555 |
atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca |
31284616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 406
Target Start/End: Original strand, 28140084 - 28140195
Alignment:
| Q |
295 |
tcaaacttatttgattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgt |
394 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||| |||| |||| |||||||| ||| | ||||| |||||||| |||| | |||||||||||| |
|
|
| T |
28140084 |
tcaaacttattttattggttaggaatgaatatgagtatgagattattacaaagatagttaaagaagtatcgaacaagataaatcgtactcctttacatgt |
28140183 |
T |
|
| Q |
395 |
tgccgataaccc |
406 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
28140184 |
tgcggattaccc |
28140195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 26056209 - 26056251
Alignment:
| Q |
25 |
aatggaagatggctcttactcaaactgctaacttctctggcta |
67 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
26056209 |
aatggaagatggctcttactcaagctgctaacttgtccggcta |
26056251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 26076179 - 26076221
Alignment:
| Q |
25 |
aatggaagatggctcttactcaaactgctaacttctctggcta |
67 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
26076179 |
aatggaagatggctcttactcaagctgctaacttgtccggcta |
26076221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 26635957 - 26636035
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtacc |
87 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||| ||| |||||||||| |||||| |||| ||||||| | |||||| |
|
|
| T |
26635957 |
atggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc |
26636035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 26741923 - 26742001
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtacc |
87 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||| ||| |||||||||| |||||| |||| ||||||| | |||||| |
|
|
| T |
26741923 |
atggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc |
26742001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 26959433 - 26959511
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtacc |
87 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||| ||| |||||||||| |||||| |||| ||||||| | |||||| |
|
|
| T |
26959433 |
atggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtacc |
26959511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 26937373 - 26937442
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatc |
78 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| ||| | || ||||| |||||| |||| ||||||| |
|
|
| T |
26937373 |
atggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccatttcaatc |
26937442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 28781406 - 28781467
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || ||| |||||||||| || |||||||| |
|
|
| T |
28781406 |
atggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctacca |
28781467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 28786545 - 28786606
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || ||| |||||||||| || |||||||| |
|
|
| T |
28786545 |
atggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctacca |
28786606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 28792666 - 28792727
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || ||| |||||||||| || |||||||| |
|
|
| T |
28792666 |
atggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctacca |
28792727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 28503803 - 28503835
Alignment:
| Q |
435 |
gtaaattcacttatggatgttggatctaatggt |
467 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
28503803 |
gtaaattcacttatagatgttggatctaatggt |
28503835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 477
Target Start/End: Original strand, 27715 - 28181
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27715 |
atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccaccaaatcaatcctaggtaccgtagttcactcatgttttaca |
27814 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27815 |
ttcttacatatgtcatacttctttaatattctattttctaactatttcatctcactatttaaattgaaaatattatttttattcttaacaagtttaa-tt |
27913 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27914 |
acttgtatgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatgattgtgaatttgtgatgcatttactcaaa-ttatttga |
28012 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28013 |
ttgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctg |
28112 |
T |
|
| Q |
409 |
atggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaagcacaga |
477 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28113 |
ttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacaga |
28181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 117059 - 117455
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||| |||| | ||||| ||| ||||||| |
|
|
| T |
117059 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccatttcagtcctgggtaacctacttaactaatgttttgtg |
117158 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagtt |
208 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||| | ||||||| || || |||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
117159 |
ttcttacatat---atatttctttaattttctattttctaaccgattcatcttacagttgaaattggaaatattaattttattcttaacaagtgtaagtt |
117255 |
T |
|
| Q |
209 |
acttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttga |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| |||| || | |||||| | ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
117256 |
acttgtatgtcaaaacaatatttgaattgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttga |
117355 |
T |
|
| Q |
309 |
ttgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctg |
408 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||||||||||||| |||| | ||||||| | |||||||||| ||||||| ||| |||||| |
|
|
| T |
117356 |
ttgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctg |
117455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 43233 - 43651
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |||| |||| | |||||||| |||| |||||||||| || |
|
|
| T |
43233 |
atggagaggttgcagaaatggaagagtgctctaactcaaacagctaacttctctggccaccatttcagttctaggtacaccacttaactcatgtttagca |
43332 |
T |
|
| Q |
109 |
ttcttacatatgt--------catacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaag |
200 |
Q |
| |
|
|||||||||| | || | ||||||||| |||||||||||||| ||||||| || || |||| |||||||||| ||||||||||||||| |
|
|
| T |
43333 |
ttcttacatagttacatataacacatttctttaattttctattttctaaccaattcatcttacagttgaaatagaaaatattaaatttattcttaacaag |
43432 |
T |
|
| Q |
201 |
tttaagttacttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaac |
300 |
Q |
| |
|
| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
43433 |
tgtaagttacttgtatg-caaaacaatatttgaattgtatttatacaactattatcaatatat--------------------gatgcatttactcaaac |
43511 |
T |
|
| Q |
301 |
ttatttgattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccga |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||| ||||||||||| |||||| |||| | ||| ||||||| ||||||| || ||||||| || |
|
|
| T |
43512 |
ttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttgctga |
43611 |
T |
|
| Q |
401 |
taaccctgatggtgtcgaatctagggtcctaaacgtaaat |
440 |
Q |
| |
|
| |||||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
43612 |
ttaccctgttggtctcgagtctagggtcctaaaagtaaat |
43651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 34992 - 35452
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| ||||| | ||| ||||| |||| || |
|
|
| T |
34992 |
atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccatttcaatccagggtacaccaattccctcatatttttca |
35091 |
T |
|
| Q |
109 |
ttcttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattct--taacaagtttaag |
206 |
Q |
| |
|
||| |||| || | || ||||||||| |||||||||| |||||||| | |||||| | ||||| |||||||| | | |||||||| |
|
|
| T |
35092 |
ttcatacaaatataatgtttctttaattctctattttctggacgtttcatcattcagtttaaagaggaaataaattttttattttattttatagtttaag |
35191 |
T |
|
| Q |
207 |
ttacttgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttattt |
306 |
Q |
| |
|
||||||| | ||||| || ||||||||||| |||||||| ||||||||||| | ||| || || ||||||||||||||| || | |||||||| |
|
|
| T |
35192 |
gtacttgtatatcaaacgaaaatttgaattgttattatacaattattattaatacaacgatgtgactg--aatttgtgatgcattaaccaagacttattt |
35289 |
T |
|
| Q |
307 |
gattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccc |
406 |
Q |
| |
|
| || |||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
35290 |
g--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccc |
35387 |
T |
|
| Q |
407 |
tgatggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
|| |||| || | |||||||||||||| |||| |||| | |||||||||||||||||||||||| |
|
|
| T |
35388 |
tgttggtctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaag |
35452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 58199 - 57751
Alignment:
| Q |
12 |
gagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtaccgtacttcactcatgttttacattc |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
58199 |
gagaggttgcagaaatggaagacagctcttactcagactgctaacttctctggccaccatttcaatactaggtaccccactttactcatgttttacattc |
58100 |
T |
|
| Q |
112 |
ttacatatgtcatacttctttaatattctattttctaactgtttcatctgactatttaaattgaaaatattatttttattcttaacaagtttaagttact |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| ||||||| | | ||||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
58099 |
ttacatatgtcatatctctttaatattctattttataaccgtttcatattaaagtttaaatagaaaaaat-atttttattcttaacaagtgtaagt---- |
58005 |
T |
|
| Q |
212 |
tgtttgtcaaaacaatatttgaattgtatttatacaactattattaataaattgatatggttgtgaatttgtgatgcatttactcaaacttatttgatt- |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
58004 |
-------caaaacaatatttgaattgtatttatacaactattattaataaattgacgcggttgtgaatttatgatgcatttactcaaacttatttcattt |
57912 |
T |
|
| Q |
311 |
gggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccctgat |
410 |
Q |
| |
|
|||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |
|
|
| T |
57911 |
gggtaggaatggatatgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgccgattaccctgtt |
57812 |
T |
|
| Q |
411 |
ggtgtcgaatctagggtcctaaacgtaaattcacttatggatgttggatctaatggtgaag |
471 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
57811 |
ggtatcgaatctagggtcctaaaagtaaattcacttctggatgttagatctaatggtgaag |
57751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 406
Target Start/End: Complemental strand, 5090601 - 5090475
Alignment:
| Q |
280 |
ttgtgatgcatttactcaaacttatttgattgggtaggaatggctatgagtttgagtttatcgagaagatagtcaaatatgtatctaacaagatcaatca |
379 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| | ||||| ||| ||||| | |||||||| ||| |||||||| |||||| || |||||||||||||| |
|
|
| T |
5090601 |
ttgtgatgcatttattcaaatttatctgatttgataggactggatatgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatca |
5090502 |
T |
|
| Q |
380 |
tgttcctttacatgttgccgataaccc |
406 |
Q |
| |
|
||||||||||||||| ||| |||| |
|
|
| T |
5090501 |
cactcctttacatgttgctgattaccc |
5090475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 5090868 - 5090792
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggta |
85 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||| | ||||| || ||||||||||| |||||| ||||||| |
|
|
| T |
5090868 |
atggagaagttgcagaaatgggagatggctcttaagcaagcagctaatttgtctggctaccatttcaatgctaggta |
5090792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 3279974 - 3280048
Alignment:
| Q |
13 |
agaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatcctaggtacc |
87 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| | |||||||| || ||| |||| || ||||||||||||| |
|
|
| T |
3279974 |
agaggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccattttaatcctaggtacc |
3280048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 3280261 - 3280319
Alignment:
| Q |
348 |
atagtcaaatatgtatctaacaagatcaatcatgttcctttacatgttgccgataaccc |
406 |
Q |
| |
|
||||||||| ||||||| |||||||| |||| || |||||||||||||| |||| |||| |
|
|
| T |
3280261 |
atagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattaccc |
3280319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 4591 - 4530
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctacca |
70 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| || ||| |||||||||| || |||||||| |
|
|
| T |
4591 |
atggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctacca |
4530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 16689290 - 16689359
Alignment:
| Q |
9 |
atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctctggctaccacttcaatc |
78 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| |||| |||||||| |||| || || || ||||||| |
|
|
| T |
16689290 |
atggataggctgcagaaatggaagacggctcttaatcaagctgctaacctctccggttatcatttcaatc |
16689359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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