View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5938-Insertion-1 (Length: 944)

Name: NF5938-Insertion-1
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5938-Insertion-1
NF5938-Insertion-1
[»] chr7 (1 HSPs)
chr7 (9-943)||(17126705-17127639)
[»] chr2 (1 HSPs)
chr2 (569-608)||(8477624-8477663)


Alignment Details
Target: chr7 (Bit Score: 832; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 9 - 943
Target Start/End: Original strand, 17126705 - 17127639
Alignment:
Q  9 ggaatgtgacttgcccgttcttgtcccagtccatttctcctatgaggaaaataaaaccagaaaagaagttagtccttttattatgacttaaatgtctttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  17126705 ggaatgtgacttgcccgttcttgtcccagtccatttctcctatgaggaaaacaaaaccagaaaagaagttagtccttttaatatgacttaaatgtctttt 17126804  T
Q  109 aggaccatgcaaatataccactttttatttttaaccagaaggactaaagttgatattacgagaactacaaccaaaaagtgatatatttgcgcggaccaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  17126805 aggaccatgcaaatataccactttttatttttaaccagaaggactaaagttgatattacgagaactaaaaccaaaatgtgatatatttgcggggaccaac 17126904  T
Q  209 gattaatagatcatgctagcaaagaagaattgatatgaacaatactgaatctgtttttagtgacgtgtgctggggatctttctctcgggttcgtttcatt 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  17126905 gattaatagatcatgctagcaaagaagaattgaaatgaacaatactgaatctgtttttagtgacgtgtgctggggatctttctctagggttcgtctcatt 17127004  T
Q  309 cattgtcctgaccatgtctttcttgttaagcttcccatcaccattttgatcaaaaaagagaaagatttcaacgattttatcaaatacttgtccaagctgt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17127005 cattgtcctgaccatgtctttcttgttaagcttcccatcaccattttgatcaaaaaagagaaagatttcaatgattttatcaaatacttgtccaagctgt 17127104  T
Q  409 gctaactctgcctttggtgactgaaacaaaaataatccataatatggtttaagggcatatatcaatttcgagatcaagaaaacataaaatcgagcagtgt 508  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17127105 gctaactcttcctttggtgactgaaacaaaaataatccataatatggtttaagggcatatatcaatttcgagatcaagaaaacataaaatcgagcagtgt 17127204  T
Q  509 attcacaaatggaccagacggctcaactggttgaactgagaactgaccagtctgctgctaggttcaactgcagtcggttctcagtctcttagaattgaat 608  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17127205 attcacaactggaccagacggctcaactggttgaactgagaactgaccagtctgctggtaggttcaactgcagtcggttctcagtctcttagaattgaat 17127304  T
Q  609 agattcgagttgaactgaagttagtctaatcggttcaannnnnnnnattaaagatatttatttcttagtaattcagttcaaccgattgcgctaattgaac 708  Q
    ||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17127305 agattcgagttgaactgaagttagtctaatcggttcaattttttttataaaagatatttatttcttagtaattcagttcaactgattgagctaattgaac 17127404  T
Q  709 catgatccagaaatctcatcggttcaatctccggtccagttttgaaaacatagaaatcaagtttataaagaatacattatcagaggataaaggttctgtt 808  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17127405 catgat-cagaaatctcatcggttcaatctctggtccagttttgaaaacatagaaatcaagtttataaagaatacattatcagaggataaaggttctgtt 17127503  T
Q  809 aggatatgaatgaggcacagaagaacaataaattcattgaactgtatccccttgcttccatcaatatcacagtactg-aaaaaattctcaatctcattct 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17127504 aggatatgaatgaggcacagaagaacaataaattcattgaactgtatccccttgcttccatcaatatcacagtactgaaaaaaattctcaatctcattct 17127603  T
Q  908 ctggaagatgaagttgcaaatcttctaagaaagttt 943  Q
    ||||||||||||||||||||||||||||||||||||    
T  17127604 ctggaagatgaagttgcaaatcttctaagaaagttt 17127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 608
Target Start/End: Original strand, 8477624 - 8477663
Alignment:
Q  569 ggttcaactgcagtcggttctcagtctcttagaattgaat 608  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  8477624 ggttcaactgcagttggttttcagtctcttagaattgaat 8477663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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