View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5938-Insertion-2 (Length: 889)

Name: NF5938-Insertion-2
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5938-Insertion-2
NF5938-Insertion-2
[»] chr4 (12 HSPs)
chr4 (317-889)||(13140327-13140913)
chr4 (9-263)||(13140005-13140273)
chr4 (181-250)||(10376141-10376210)
chr4 (206-263)||(40293337-40293394)
chr4 (317-358)||(40293244-40293285)
chr4 (324-359)||(42853942-42853977)
chr4 (324-359)||(44272843-44272878)
chr4 (29-63)||(21952507-21952541)
chr4 (317-359)||(32871855-32871897)
chr4 (29-63)||(42641737-42641771)
chr4 (177-250)||(32871713-32871786)
chr4 (26-63)||(51044563-51044600)
[»] chr7 (12 HSPs)
chr7 (183-263)||(11813446-11813526)
chr7 (179-262)||(34820698-34820781)
chr7 (317-357)||(22588987-22589027)
chr7 (323-359)||(37385265-37385301)
chr7 (324-359)||(40693561-40693596)
chr7 (181-250)||(27305913-27305982)
chr7 (325-359)||(38547313-38547347)
chr7 (317-359)||(43573569-43573611)
chr7 (29-63)||(46223176-46223210)
chr7 (317-359)||(48395251-48395293)
chr7 (322-359)||(26153649-26153686)
chr7 (178-263)||(42663300-42663385)
[»] chr5 (13 HSPs)
chr5 (179-263)||(30838251-30838335)
chr5 (188-263)||(14062730-14062805)
chr5 (317-359)||(30838391-30838433)
chr5 (320-359)||(14780450-14780489)
chr5 (317-359)||(2629821-2629863)
chr5 (317-359)||(14062859-14062901)
chr5 (324-359)||(29803228-29803263)
chr5 (324-359)||(34428163-34428198)
chr5 (317-359)||(844039-844081)
chr5 (317-359)||(8728607-8728649)
chr5 (180-262)||(35474482-35474564)
chr5 (317-359)||(41621954-41621996)
chr5 (317-359)||(42446317-42446359)
[»] chr2 (17 HSPs)
chr2 (190-263)||(31415112-31415185)
chr2 (178-263)||(18423649-18423733)
chr2 (317-359)||(15123962-15124004)
chr2 (321-359)||(22303206-22303244)
chr2 (323-365)||(3366429-3366471)
chr2 (325-359)||(15141476-15141510)
chr2 (317-359)||(18423787-18423829)
chr2 (317-359)||(18510678-18510720)
chr2 (317-359)||(24727616-24727658)
chr2 (317-359)||(25507258-25507300)
chr2 (317-359)||(31415241-31415283)
chr2 (317-359)||(31629607-31629649)
chr2 (188-262)||(34432392-34432466)
chr2 (317-359)||(40874287-40874329)
chr2 (182-235)||(13453844-13453897)
chr2 (182-227)||(22966923-22966968)
chr2 (321-358)||(43621978-43622015)
[»] chr8 (14 HSPs)
chr8 (188-263)||(21467483-21467557)
chr8 (179-261)||(13592860-13592942)
chr8 (181-249)||(23262824-23262892)
chr8 (207-263)||(26509535-26509591)
chr8 (317-359)||(45108683-45108725)
chr8 (317-359)||(13592769-13592811)
chr8 (179-235)||(26628995-26629051)
chr8 (183-235)||(45108605-45108657)
chr8 (323-359)||(40380284-40380320)
chr8 (324-359)||(9985711-9985746)
chr8 (317-359)||(21467387-21467429)
chr8 (317-359)||(26629136-26629178)
chr8 (317-359)||(30170755-30170797)
chr8 (317-362)||(39031238-39031283)
[»] chr1 (9 HSPs)
chr1 (321-359)||(7078530-7078568)
chr1 (321-359)||(34395949-34395987)
chr1 (317-359)||(35883633-35883675)
chr1 (190-250)||(35883504-35883564)
chr1 (321-359)||(11097914-11097952)
chr1 (317-354)||(19476152-19476190)
chr1 (325-358)||(3977559-3977592)
chr1 (317-358)||(41619060-41619101)
chr1 (193-246)||(49139640-49139693)
[»] scaffold0178 (1 HSPs)
scaffold0178 (317-354)||(11579-11616)
[»] scaffold0016 (1 HSPs)
scaffold0016 (323-359)||(204477-204513)
[»] chr3 (7 HSPs)
chr3 (323-359)||(50559244-50559280)
chr3 (317-364)||(3282531-3282578)
chr3 (324-359)||(45528975-45529010)
chr3 (321-359)||(2482704-2482742)
chr3 (317-359)||(25188491-25188533)
chr3 (317-359)||(41850946-41850988)
chr3 (323-356)||(41637312-41637345)
[»] scaffold0578 (1 HSPs)
scaffold0578 (317-354)||(7005-7043)
[»] scaffold0449 (1 HSPs)
scaffold0449 (317-359)||(9206-9248)
[»] scaffold0041 (1 HSPs)
scaffold0041 (325-359)||(34411-34445)
[»] chr6 (5 HSPs)
chr6 (317-359)||(13093629-13093671)
chr6 (181-235)||(31204698-31204752)
chr6 (325-359)||(32644626-32644660)
chr6 (317-359)||(35213587-35213629)
chr6 (317-358)||(10840722-10840763)
[»] scaffold1625 (1 HSPs)
scaffold1625 (317-358)||(807-848)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 317 - 889
Target Start/End: Original strand, 13140327 - 13140913
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccagtagttaagttcaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13140327 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccaatagttaagttcaaa 13140426  T
Q  417 ttagtcaattcaaacgtaccataagtattagttctttcagcaattttttgttactatttatctcatatttaaaaattcaaagtgacattggccgnnnnnn 516  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  13140427 ttagtcaattcaaacgtaccataagtattagttccttcagcaattttttgttactatttatctcatatttaaaaattcaaagtgacattggccgtttttt 13140526  T
Q  517 nnnngtcaataatatctaaaactgttaaatatagtcagagaaatatgtaaaatgggataaatataattaaaagtgtcataggaaaaaga----------- 605  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  13140527 tt--gtcaataatatctaaaactgttaaatatagtcagagaaatatgtaaaatgggataaatataattaaaagtgtcataggaaaaagaaaaaaattcat 13140624  T
Q  606 ----aaaatactgatttctttaatatgtttaaaaaactttaaaccgtcattgagaagaaaaggcggtagtagtttcttggttagttagaacttagcttac 701  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  13140625 aagaaaaatactgatttctttaatatgtttaaaaaactttaaaccgtcattgagaaggaaaggcggtagtagtttcttggttagttataacttagcttac 13140724  T
Q  702 tgaatgcattgcaatccattggtgcatgaggatgagaggatatttcatgttttttctagcacttgttccttttacttttatcttaaacaaattcaattca 801  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13140725 tgaatgcattgcaatccattggtgcgtgaggatgagaggatatttcatgttttttctagcacttgttccttttacttttatcttaaacaaattcaattca 13140824  T
Q  802 tcggtctcaggatggaacaggtc-aagctacttgtgtatttgcggaacaagaggtggagtatgagctctgcgttatcatggatgttgtc 889  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13140825 tcgctctcaggatggaacaggtcaaagctacttgtgtatttgcggaacaagaggtggagtatgagctctgtgttatcatggatgttgtc 13140913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 13140005 - 13140273
Alignment:
Q  9 gtttggatgaatagcttagttaagtgtttatgcataagctatttccataacaaaatattcnnnnnnnnn-gttaaactgttttgagttttgacataagtt 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||    
T  13140005 gtttggatgaatagcttagttaagtgttaatgcataagctatttccataaaaaaatattcaaaaaaaaaagttaaactgttttgagttttgacataagtt 13140104  T
Q  108 ataagct-------------atattgaagagcctgtggaaatagattcaaaacagcttatggatgtgtcataagcnnnnnnnataaagaggattgatatt 194  Q
    |||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||    
T  13140105 ataagctgtttttataagctatattgaagagcctgtggaaatagattcaaaacagcttatggatgtgtcataagctgttttcataaagaggagtgatatt 13140204  T
Q  195 tgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13140205 tgtacaaccaattttgtacaactcttgtgacaactacttttctcctctttctattgaacagaaacaatg 13140273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 10376210 - 10376141
Alignment:
Q  181 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 250  Q
    |||||| |||||||||||||||||||| | ||| | |||||| ||||| | |||||||||||||||||||    
T  10376210 agaggagtgatatttgtacaaccaattgtatacaattcttgtaacaaccatttttctcctctttttattg 10376141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 40293394 - 40293337
Alignment:
Q  206 ttttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||||| | |||||||||||||| |||| |||||||||||||||||| ||||||||    
T  40293394 ttttgtacaaatcttgtgacaactatttttttcctctttttattgaacaaaaacaatg 40293337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 40293285 - 40293244
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  40293285 ttgtttcaaaaattgtcaaaaaattgatgtacaaatatcatt 40293244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 42853977 - 42853942
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcattt 42853942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 44272843 - 44272878
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcattt 44272878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 21952507 - 21952541
Alignment:
Q  29 taagtgtttatgcataagctatttccataacaaaa 63  Q
    ||||||||||||||||||||||||| |||||||||    
T  21952507 taagtgtttatgcataagctatttctataacaaaa 21952541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 32871855 - 32871897
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  32871855 ttgtttcaaaagttgtcaagaaatagtggtacaaatatcattt 32871897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 42641771 - 42641737
Alignment:
Q  29 taagtgtttatgcataagctatttccataacaaaa 63  Q
    |||||||||||| ||||||||||||||||||||||    
T  42641771 taagtgtttatgtataagctatttccataacaaaa 42641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 32871713 - 32871786
Alignment:
Q  177 ataaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 250  Q
    |||||||||| ||||||||||||| |||||| |  || |||||| ||||||  |||||||  ||||||||||||    
T  32871713 ataaagaggagtgatatttgtacatccaattcttgacaactcttttgacaatcacttttcctctctttttattg 32871786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 51044600 - 51044563
Alignment:
Q  26 agttaagtgtttatgcataagctatttccataacaaaa 63  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  51044600 agttaagtgtttatgtataagctatttctataacaaaa 51044563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 11813526 - 11813446
Alignment:
Q  183 aggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11813526 aggagtgatatttgtacaaccaattttgtataactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 11813446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 34820781 - 34820698
Alignment:
Q  179 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 262  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||| |||||||||| || ||||||||| ||| |||||||    
T  34820781 aaagaggagtgatatttgcacaatcaattttgtacaactcttgtgacatctacttttcttctttttttattggacaaaaacaat 34820698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 22588987 - 22589027
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcat 357  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  22588987 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 37385265 - 37385301
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37385265 caaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 40693561 - 40693596
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40693561 aaaagttgtcaaaaaatagttgtacaaatatcattt 40693596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 27305913 - 27305982
Alignment:
Q  181 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaacta-cttttctcctctttttattg 250  Q
    |||||| |||||||| ||||| ||||||||||| ||| |||||||||| | ||||||| ||||||||||||    
T  27305913 agaggagtgatatttatacaatcaattttgtacaacttttgtgacaaccatcttttct-ctctttttattg 27305982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 38547313 - 38547347
Alignment:
Q  325 aaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||| ||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcattt 38547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 43573569 - 43573611
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  43573569 ttgttgcaaaagttgtcacaaaatagatgttcaaatatcattt 43573611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 46223210 - 46223176
Alignment:
Q  29 taagtgtttatgcataagctatttccataacaaaa 63  Q
    |||||||||||| ||||||||||||||||||||||    
T  46223210 taagtgtttatgtataagctatttccataacaaaa 46223176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 48395293 - 48395251
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  48395293 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 48395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 26153686 - 26153649
Alignment:
Q  322 tcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  26153686 tcaaaagttgtcataaaatagttgtacaaatatcattt 26153649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 42663300 - 42663385
Alignment:
Q  178 taaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||| |||||||||||||||| | ||| ||  || ||| | |||||||| |||||||||||||| | |||| ||| ||||||||    
T  42663300 taaagaagattgatatttgtacatctaatattagacaactttggtgacaaccacttttctcctcttgtgattggacaaaaacaatg 42663385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 30838251 - 30838335
Alignment:
Q  179 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | | ||||||||    
T  30838251 aaagaggagtgatatttgtacagccaattttgtacaactcttgttacaactacttttctcctctttttattggataaaaacaatg 30838335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 14062730 - 14062805
Alignment:
Q  188 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| | |||||||||| ||| ||||||||    
T  14062730 tgatatttatacaaccaattttgtacaactcttatgacaactacttttctacactttttattggacaaaaacaatg 14062805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 30838391 - 30838433
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  30838391 ttgtttcaaaagttgtcaaaaagtagatgtacaaatatcattt 30838433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 14780450 - 14780489
Alignment:
Q  320 tttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14780450 tttcaaaagttgtcaaaaagtagatgtacaaatatcattt 14780489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 2629863 - 2629821
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  2629863 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 2629821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 14062859 - 14062901
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  14062859 ttgtttcaaaagttgttaaaaaatagatgttcaaatatcattt 14062901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 29803263 - 29803228
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcattt 29803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 34428198 - 34428163
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcattt 34428163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 844081 - 844039
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||| | ||| ||||||||||||    
T  844081 ttgtttcaaaagttgtcaaaaaatggttgtgcaaatatcattt 844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 8728607 - 8728649
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  8728607 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 8728649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 35474564 - 35474482
Alignment:
Q  180 aagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 262  Q
    ||||||| ||||||||||||||  |||||||||| | | |||||||||| ||||||   || ||||||||| ||| |||||||    
T  35474564 aagaggaatgatatttgtacaattaattttgtacaatttttgtgacaaccactttttctctatttttattggacaaaaacaat 35474482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 41621954 - 41621996
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  41621954 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 41621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 42446317 - 42446359
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  42446317 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 42446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 31415112 - 31415185
Alignment:
Q  190 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  31415112 atatttatacaaccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 31415185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 18423649 - 18423733
Alignment:
Q  178 taaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||| || ||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  18423649 taaagaagagtgatatttgtacg-ccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 18423733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 15123962 - 15124004
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  15123962 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 15124004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 22303244 - 22303206
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22303244 ttcaaaagttgtcaaaaaatagttgtacaaatatcattt 22303206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 3366429 - 3366471
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatcatttgttttt 365  Q
    |||||||||| | |||||||||||||||||||||||| |||||    
T  3366429 caaaagttgtaataaaatagatgtacaaatatcattttttttt 3366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 15141510 - 15141476
Alignment:
Q  325 aaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||| ||||||||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcattt 15141476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 18423787 - 18423829
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  18423787 ttgttttaaaagatatcaaaaaatagatgtacaaatatcattt 18423829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 18510720 - 18510678
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  18510720 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 18510678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 24727616 - 24727658
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  24727616 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 24727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 25507300 - 25507258
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  25507300 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 25507258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 31415241 - 31415283
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| || | |||||||||||||||    
T  31415241 ttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcattt 31415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 31629649 - 31629607
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  31629649 ttgttccaaaagttgtcaaaaagtagttgtacaaatatcattt 31629607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 34432392 - 34432466
Alignment:
Q  188 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 262  Q
    |||||||||||||||||||||||||| ||| || ||||||| | ||||   || ||||||||| ||| |||||||    
T  34432392 tgatatttgtacaaccaattttgtacaacttttttgacaaccattttttctctatttttattggacaaaaacaat 34432466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 40874287 - 40874329
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  40874287 ttgtttcaaaagttgttaaaaaatggttgtacaaatatcattt 40874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 13453844 - 13453897
Alignment:
Q  182 gaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 235  Q
    ||||| |||||||||||||||||||||| ||| | | |||||||||| ||||||    
T  13453844 gaggagtgatatttgtacaaccaattttatacaatttttgtgacaaccactttt 13453897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 22966968 - 22966923
Alignment:
Q  182 gaggattgatatttgtacaaccaattttgtacgactcttgtgacaa 227  Q
    ||||| |||||||||||||||||||||||||| ||  |||||||||    
T  22966968 gaggagtgatatttgtacaaccaattttgtacaacctttgtgacaa 22966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 43621978 - 43622015
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  43621978 ttcaaaagttgtcataaaatagttgtacaaatatcatt 43622015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 21467557 - 21467483
Alignment:
Q  188 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||| ||| ||||||||    
T  21467557 tgatatttgtacaaccaattttgtacaactcttgtgacaactatttttctcatc-ttttattggacaaaaacaatg 21467483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 13592942 - 13592860
Alignment:
Q  179 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaa 261  Q
    |||||||| ||||||||||||||  |||||||||||  ||||||||||| || ||||||||||||||||||||| | ||||||    
T  13592942 aaagaggagtgatatttgtacaataaattttgtacggttcttgtgacaattaattttctcctctttttattgaaaaaaaacaa 13592860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 23262892 - 23262824
Alignment:
Q  181 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttatt 249  Q
    |||||| |||||||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  23262892 agaggagtgatatttttacaaccaattttgtacaacttttgtgataactatttttctcctctttttatt 23262824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 26509591 - 26509535
Alignment:
Q  207 tttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 263  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  26509591 tttgtacaactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 26509535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 45108683 - 45108725
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45108683 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 45108725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 13592811 - 13592769
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13592811 ttgtttcaaaagttgtcaaaaaataggtgtacaaatatcattt 13592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 26628995 - 26629051
Alignment:
Q  179 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 235  Q
    |||||||| |||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  26628995 aaagaggagtgatatttgtacaaccaattttgtacaacatttgtgacaaccactttt 26629051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 45108605 - 45108657
Alignment:
Q  183 aggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 235  Q
    |||| |||||||||||||||||||||||||| |||||||||| || |||||||    
T  45108605 aggagtgatatttgtacaaccaattttgtacaactcttgtgataattactttt 45108657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 40380320 - 40380284
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40380320 caaaagttgtcataaaatagatgtacaaatatcattt 40380284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 9985711 - 9985746
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9985711 aaaagttgtcataaaatagatgtacaaatatcattt 9985746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 21467429 - 21467387
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  21467429 ttgttttaaaagttgtcaaaaaataaatgtataaatatcattt 21467387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 26629136 - 26629178
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  26629136 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 26629178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 30170755 - 30170797
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  30170755 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 30170797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 39031238 - 39031283
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtt 362  Q
    |||||||||||||| | ||||||||  |||||||||||||||||||    
T  39031238 ttgtttcaaaagttataaaaaaataattgtacaaatatcatttgtt 39031283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 7078530 - 7078568
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7078530 ttcaaaagttgtcacaaaatagatgtacaaatatcattt 7078568  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 34395949 - 34395987
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34395949 ttcaaaagttgtcataaaatagatgtacaaatatcattt 34395987  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 35883633 - 35883675
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  35883633 ttgtttcaaaagttgtcaaaaaataattgtacaaatatcattt 35883675  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 35883504 - 35883564
Alignment:
Q  190 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 250  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||   ||||||||||||    
T  35883504 atatttgtacaaccaattttgtacaacctttgtgacaaccactttttctctctttttattg 35883564  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 11097914 - 11097952
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11097914 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 11097952  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 19476152 - 19476190
Alignment:
Q  317 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 354  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  19476152 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 19476190  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 3977592 - 3977559
Alignment:
Q  325 aaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    |||||||||| |||||||||||||||||||||||    
T  3977592 aaagttgtcacaaaatagatgtacaaatatcatt 3977559  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 41619101 - 41619060
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  41619101 ttgtctcaaaagttatcaaaaaatagttgtacaaatatcatt 41619060  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 49139640 - 49139693
Alignment:
Q  193 tttgtacaaccaattttgtacgactcttgtgacaactacttttctcctcttttt 246  Q
    ||||||||| ||||||||||  ||| || ||||||||| |||||||||||||||    
T  49139640 tttgtacaatcaattttgtataacttttatgacaactatttttctcctcttttt 49139693  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 11579 - 11616
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatat 354  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11579 ttgtttcaaaagttgtcaaaaaataaatgtacaaatat 11616  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 204477 - 204513
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||| ||||||||||||||||||||||||    
T  204477 caaaagttgtcagaaaatagatgtacaaatatcattt 204513  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 50559244 - 50559280
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||| ||||||||||||||||    
T  50559244 caaaagttgtcaaaaaatagttgtacaaatatcattt 50559280  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 3282578 - 3282531
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttt 364  Q
    |||||||||||||||||||||||||  | |||||||||||||| ||||    
T  3282578 ttgtttcaaaagttgtcaaaaaatacttatacaaatatcatttctttt 3282531  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 45528975 - 45529010
Alignment:
Q  324 aaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcattt 45529010  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 2482704 - 2482742
Alignment:
Q  321 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  2482704 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 2482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 25188491 - 25188533
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  25188491 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 25188533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 41850988 - 41850946
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||||| || | ||||||||||||||||    
T  41850988 ttgtttcaaaagttgtcaaaatatggttgtacaaatatcattt 41850946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 41637312 - 41637345
Alignment:
Q  323 caaaagttgtcaaaaaatagatgtacaaatatca 356  Q
    |||||||||||||||||||| |||||||||||||    
T  41637312 caaaagttgtcaaaaaatagttgtacaaatatca 41637345  T

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Target: scaffold0578 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 7005 - 7043
Alignment:
Q  317 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 354  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7005 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 7043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 9248 - 9206
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  9248 ttgtttcaaaagttgtcattaaatagatgttcaaatatcattt 9206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 34445 - 34411
Alignment:
Q  325 aaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||| ||||||||||||||||    
T  34445 aaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 13093671 - 13093629
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  13093671 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 31204698 - 31204752
Alignment:
Q  181 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 235  Q
    |||||| |||||||||||||| ||||||||||| ||  |||||||||| ||||||    
T  31204698 agaggagtgatatttgtacaatcaattttgtacaacctttgtgacaaccactttt 31204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 32644660 - 32644626
Alignment:
Q  325 aaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    |||||||||||||||||| ||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcattt 32644626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 35213587 - 35213629
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 359  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcattt 35213629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 10840763 - 10840722
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  10840763 ttgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 807 - 848
Alignment:
Q  317 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 358  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  807 ttgtttcaaaagttgtcaaaaaatgattgtacaaatatcatt 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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