View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5938-Insertion-3 (Length: 650)
Name: NF5938-Insertion-3
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5938-Insertion-3 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Complemental strand, 44465504 - 44464862
Alignment:
| Q |
8 |
aaaaatcactatcacaatcccgaaaattctcagacctaatcaacaaatatctccaacgtcgctccactctttccaccaccgctttgcgagcactacaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465504 |
aaaaatcactatcacaatcccgaaaattctcagacctaatcaacaaatatctccaacgtcgctccactctttccaccaccgctttgcgagcactacaaga |
44465405 |
T |
|
| Q |
108 |
ttgtcaatcgctcagcgacctcaactttgatttcctttcaagctcttttcaaactgttaacaaaacaacaaagtttcttccaagtttacaaggtgaaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465404 |
ttgtcaatcgctcagcgacctcaactttgatttcctttcaagctcttttcaaactgttaacaaaacaacaaagtttcttccaagtttacaaggtgaaaat |
44465305 |
T |
|
| Q |
208 |
atccaaacattactcagcgcgattctgacaaaccaacaaacttgtttggatggtcttaaagacacttcttcagcttggagttttcgaaatggactcacaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44465304 |
atccaaacattactcagcgcgattctgacaaaccaacaaacttgtttggatggtcttaaagacacttcgtcagcttggagttttcgaaatggactcacaa |
44465205 |
T |
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| Q |
308 |
ttccactttctaatgacaccaaactctatagtgtctctcttgctttctttaccaaaggttgggttaatcccaaaaccaataaaacctcgtttcctaattc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465204 |
ttccactttctaatgacaccaaactctatagtgtctctcttgctttctttaccaaaggttgggttaatcccaaaaccaataaaacctcgtttcctaattc |
44465105 |
T |
|
| Q |
408 |
caaacactccaacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcggagaaagcttctt |
507 |
Q |
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| T |
44465104 |
caaacactccaacaaaggatttaaaaacgggcgtttgccgcttaagatgacgagcaaaacacgcgcgatttatgagtcagttagtcggagaaagcttctt |
44465005 |
T |
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| Q |
508 |
cagagtaatcaagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465004 |
cagagtaatcaagttggagaggatgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctg |
44464905 |
T |
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| Q |
608 |
cagctccaaataaatctgtttctagtgatggatattttttgat |
650 |
Q |
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| T |
44464904 |
cagctccaaataaatctgtttctagtgatggatattttttgat |
44464862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 556 - 620
Target Start/End: Complemental strand, 44489338 - 44489274
Alignment:
| Q |
556 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataa |
620 |
Q |
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| T |
44489338 |
gttagtcaagatgggagtggaaactttacaactatcaatgatgctgttgctgctgctccaaataa |
44489274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 602
Target Start/End: Complemental strand, 44476165 - 44476110
Alignment:
| Q |
547 |
attgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctat |
602 |
Q |
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| T |
44476165 |
attgtgattgttaatcaagatggaagtggaaattttacaacaattaatgatgctat |
44476110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 641
Target Start/End: Complemental strand, 24061911 - 24061826
Alignment:
| Q |
556 |
gttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttctagtgatggata |
641 |
Q |
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| T |
24061911 |
gttagtcaagatggaagtggaaacttcaccactatcaatgatgcaatagctgctgcaccaaataacacggttgctagtgatggata |
24061826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 641
Target Start/End: Original strand, 39450329 - 39450439
Alignment:
| Q |
531 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
630 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
39450329 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39450428 |
T |
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| Q |
631 |
agtgatggata |
641 |
Q |
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| T |
39450429 |
agtgatggata |
39450439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 641
Target Start/End: Original strand, 39471201 - 39471311
Alignment:
| Q |
531 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
630 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
39471201 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
39471300 |
T |
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| Q |
631 |
agtgatggata |
641 |
Q |
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| T |
39471301 |
agtgatggata |
39471311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 641
Target Start/End: Complemental strand, 3292 - 3182
Alignment:
| Q |
531 |
tgttgtggtgagagatattgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctattgctgcagctccaaataaatctgtttct |
630 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||| | || ||||| || | ||||| || |||||||| | ||| || |
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| T |
3292 |
tgttgtggtgagtgatgttgtcgttgttagtcaagatggaagtggaaactttaccgcaatcaatgacgccgtagctgctgcaccaaataacacggttgct |
3193 |
T |
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| Q |
631 |
agtgatggata |
641 |
Q |
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| T |
3192 |
agtgatggata |
3182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 602
Target Start/End: Original strand, 19475227 - 19475265
Alignment:
| Q |
564 |
agatggaagtggaaactttaccacgattaatgatgctat |
602 |
Q |
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|||||||||||||||||||| ||| |||||||||||||| |
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| T |
19475227 |
agatggaagtggaaactttagcactattaatgatgctat |
19475265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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