View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5938-Insertion-4 (Length: 190)

Name: NF5938-Insertion-4
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5938-Insertion-4
NF5938-Insertion-4
[»] chr6 (4 HSPs)
chr6 (9-190)||(33694852-33695031)
chr6 (9-190)||(12938713-12938893)
chr6 (10-157)||(28138039-28138184)
chr6 (32-116)||(14532047-14532131)
[»] chr7 (9 HSPs)
chr7 (29-190)||(19436764-19436923)
chr7 (29-190)||(29833911-29834070)
chr7 (9-113)||(29258458-29258563)
chr7 (85-175)||(6442633-6442721)
chr7 (78-184)||(45972423-45972527)
chr7 (78-131)||(47327942-47327995)
chr7 (89-180)||(34094118-34094207)
chr7 (78-157)||(29243380-29243455)
chr7 (151-190)||(29258580-29258619)
[»] chr4 (10 HSPs)
chr4 (29-190)||(27293038-27293197)
chr4 (29-190)||(4919106-4919265)
chr4 (8-184)||(42976401-42976575)
chr4 (85-175)||(45989591-45989679)
chr4 (78-184)||(28679508-28679612)
chr4 (85-183)||(42069019-42069115)
chr4 (78-184)||(55919359-55919463)
chr4 (78-134)||(15531231-15531287)
chr4 (78-157)||(20133410-20133487)
chr4 (85-163)||(47031452-47031528)
[»] chr3 (11 HSPs)
chr3 (29-190)||(50650358-50650517)
chr3 (29-190)||(12938493-12938652)
chr3 (31-184)||(31658792-31658943)
chr3 (29-119)||(33216690-33216780)
chr3 (29-106)||(29833367-29833444)
chr3 (78-133)||(36950179-36950234)
chr3 (78-134)||(29703556-29703612)
chr3 (78-131)||(5232946-5232999)
chr3 (78-157)||(39833230-39833307)
chr3 (78-134)||(53282294-53282350)
chr3 (78-131)||(20104322-20104375)
[»] chr5 (7 HSPs)
chr5 (29-190)||(1828504-1828663)
chr5 (29-190)||(40313969-40314128)
chr5 (29-190)||(41413409-41413568)
chr5 (31-190)||(30624958-30625115)
chr5 (29-119)||(31482104-31482194)
chr5 (78-134)||(39884696-39884752)
chr5 (78-184)||(24788296-24788400)
[»] chr2 (10 HSPs)
chr2 (29-190)||(14096348-14096507)
chr2 (65-131)||(18977134-18977200)
chr2 (78-133)||(7089225-7089280)
chr2 (78-184)||(15330735-15330839)
chr2 (78-184)||(37261669-37261773)
chr2 (78-131)||(37078947-37079000)
chr2 (78-184)||(14810087-14810191)
chr2 (78-184)||(16429864-16429968)
chr2 (78-184)||(17690604-17690708)
chr2 (78-133)||(33755091-33755146)
[»] chr1 (6 HSPs)
chr1 (37-190)||(27286264-27286415)
chr1 (13-176)||(39241634-39241792)
chr1 (29-187)||(52385783-52385939)
chr1 (78-184)||(12981521-12981625)
chr1 (85-175)||(45325616-45325704)
chr1 (78-184)||(45348240-45348344)
[»] chr8 (5 HSPs)
chr8 (29-119)||(13802715-13802805)
chr8 (78-133)||(3879488-3879543)
chr8 (29-131)||(23613575-23613678)
chr8 (78-184)||(531684-531788)
chr8 (78-157)||(30945452-30945527)
[»] scaffold0166 (1 HSPs)
scaffold0166 (78-184)||(30679-30783)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 33694852 - 33695031
Alignment:
Q  9 gatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttac 108  Q
    |||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||     
T  33694852 gatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatcttaacagttagatttat 33694951  T
Q  109 ttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33694952 ttggcctctatattattgtgg--tacaccctctacatatgatttttcttataattccatttctctctcttctttatcactca 33695031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 12938713 - 12938893
Alignment:
Q  9 gatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattta 107  Q
    |||||||||||||||  ||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||||     
T  12938713 gatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttg 12938812  T
Q  108 cttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
     |||| |||||| |||||||||  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  12938813 tttggtctctatgttattgtgg--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 12938893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 28138184 - 28138039
Alignment:
Q  10 atgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttact 109  Q
    ||||||||||||||   | ||||||| ||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||  ||||||||||||    
T  28138184 atgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatcttaaaggttagatttact 28138085  T
Q  110 tggcctctatattattgtggtatacgccctctacatatgatttttctt 157  Q
    ||| ||||||||||||||||  |||| | |||||| ||||||||||||    
T  28138084 tggtctctatattattgtgg--tacgtcatctacacatgatttttctt 28138039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 14532131 - 14532047
Alignment:
Q  32 aattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctc 116  Q
    |||||||||||| |  |||||||| ||||||| |||||| |||| ||||| |||| ||||||||  |||||||||  ||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttggcctc 14532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 2e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 19436764 - 19436923
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| ||||||||    
T  19436764 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtg 19436863  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| |||| |||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  19436864 g--tacaccctatacacatgatttttcttatttttccaattctctttcctctttatcactca 19436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 29834070 - 29833911
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| ||||||||    
T  29834070 acaaactctaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtg 29833971  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    ||| |  |||||| || |||||||| |||||  ||||| |||||| || |||||||||||||    
T  29833970 gtaaa--ccctctgcacatgattttacttatttttccaattctctttcctctttatcactca 29833911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 29258458 - 29258563
Alignment:
Q  9 gatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatc-ttaacagttagattta 107  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| | |||||||||||||||| ||| ||||| ||||||||||    
T  29258458 gatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataatctttaacggttagattta 29258557  T
Q  108 cttggc 113  Q
    ||||||    
T  29258558 cttggc 29258563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 6442633 - 6442721
Alignment:
Q  85 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 175  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 6442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 45972423 - 45972527
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45972520  T
Q  178 tctttat 184  Q
    |||||||    
T  45972521 tctttat 45972527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 47327942 - 47327995
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 131  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 47327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 34094118 - 34094207
Alignment:
Q  89 atcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttct 180  Q
    |||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| || |||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttcacttct 34094207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 29243380 - 29243455
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 157  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 29243455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 29258580 - 29258619
Alignment:
Q  151 ttttcttataattccatttctctctcttctttatcactca 190  Q
    |||||||||||||||   ||||||||||||||||||||||    
T  29258580 ttttcttataattccgcatctctctcttctttatcactca 29258619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 2e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 27293038 - 27293197
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| ||||||||    
T  27293038 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtg 27293137  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  27293138 g--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 27293197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 4919106 - 4919265
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||  |||||||||  |||| ||||||  |||||||    
T  4919106 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtg 4919205  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    ||| |||  ||||||| ||||||||||||||  ||||| |||| | || |||||||||||||    
T  4919206 gtacacg--ctctacacatgatttttcttatttttccaattctatttcctctttatcactca 4919265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 42976401 - 42976575
Alignment:
Q  8 agatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattta 107  Q
    ||||||||||||| ||   ||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  42976401 agatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagattta 42976500  T
Q  108 cttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttctttat 184  Q
    ||||| |||||| ||| |||||  ||| || |||||| |||||||||||| || |  || ||||||||| |||||||    
T  42976501 cttggtctctatgttaatgtgg--tacaccatctacacatgatttttcttctagtatcaattctctctcctctttat 42976575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 45989679 - 45989591
Alignment:
Q  85 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 175  Q
    |||||||||||| |||||||||| |||| |||||| |||||||||||||  || |||||| |||||||||||| ||||| || ||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctctct 45989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 28679508 - 28679612
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||| |||||||||| ||||| |||||||||  |||||| |||||||||||||  || |||||| |||||||||||| || | ||| || ||||||     
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtata--ccatctacacatgatttttcttctagtaccaattttctctcc 28679605  T
Q  178 tctttat 184  Q
    |||||||    
T  28679606 tctttat 28679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 42069115 - 42069019
Alignment:
Q  85 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctcttcttta 183  Q
    |||||||||||| |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| ||||| || |||| |||| ||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatttcaattctttctcctcttta 42069019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 55919463 - 55919359
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| |||| |||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 55919366  T
Q  178 tctttat 184  Q
    |||||||    
T  55919365 tctttat 55919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 15531287 - 15531231
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 134  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 15531231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 20133410 - 20133487
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 157  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 20133487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 47031528 - 47031452
Alignment:
Q  85 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataatt 163  Q
    |||||||||||  |||||||||| |||  |||||| |||||||||||||  || |||||| |||||||||||| |||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtata--ccatctacacatgatttttcttctaatt 47031452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 2e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 50650517 - 50650358
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| ||||||||    
T  50650517 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtg 50650418  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  50650417 g--tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 50650358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 12938493 - 12938652
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  12938493 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 12938592  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||    
T  12938593 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactca 12938652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 31658943 - 31658792
Alignment:
Q  31 aaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggt 130  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||| |||||||||     
T  31658943 aaattctaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatcttaacggttagatttacttggtctctatgttattgtgg- 31658845  T
Q  131 atacgccctctacatatgatttttcttataattccatttctctctcttctttat 184  Q
     ||| || |||||| |||||||||||| ||||  || ||||||||| |||||||    
T  31658844 -tacaccatctacacatgatttttcttctaatatcaattctctctcctctttat 31658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 33216780 - 33216690
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||  |||||||||  |||||||||||    
T  33216780 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggcctctat 33216690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 29833367 - 29833444
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagattt 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||    
T  29833367 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 36950234 - 36950179
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 133  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 36950179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 29703612 - 29703556
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 134  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 29703556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 5232946 - 5232999
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 131  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 5232999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 39833307 - 39833230
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 157  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| ||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttctt 39833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 53282294 - 53282350
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 134  Q
    |||||||||| |||||||  ||||||||||||| | |||||| ||||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatac 53282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 20104322 - 20104375
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 131  Q
    ||||||||||||||||||  ||||||||||||||  || ||| |||||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggta 20104375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 6e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 1828504 - 1828663
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  1828504 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 1828603  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||    
T  1828604 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactca 1828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 40313969 - 40314128
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||  ||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  40313969 acaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 40314068  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| |||| |||| |||||||||||||||||||||  |||||||| |||||||||||||    
T  40314069 g--tacaccctttacacatgatttttcttataattccaaatctctctcctctttatcactca 40314128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 41413568 - 41413409
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    ||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| ||||||||    
T  41413568 acaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtg 41413469  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |  ||| |||| |||| |||||||||||||||||||||  ||||| || |||||||||||||    
T  41413468 g--tacaccctttacacatgatttttcttataattccaaatctctttcctctttatcactca 41413409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 30624958 - 30625115
Alignment:
Q  31 aaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggt 130  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  || ||||| |||||||||  |||| |||||| |||||||||     
T  30624958 aaattttaatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtgg- 30625056  T
Q  131 atacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
     ||| ||||||||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  30625057 -tacaccctctacacatgatttttcttatttttccaattctctttcctctttatcactca 30625115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 31482194 - 31482104
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||  |||||||||  |||| ||||||    
T  31482194 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctat 31482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 39884696 - 39884752
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 134  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 39884752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 24788400 - 24788296
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 24788303  T
Q  178 tctttat 184  Q
    |||||||    
T  24788302 tctttat 24788296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 1e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 14096348 - 14096507
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| ||||||  |||||||    
T  14096348 acaaattctaatatggatcacttgtttcatatgttccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtg 14096447  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    ||| |||  ||||||| ||||||||||||||  ||||| |||| | || |||||||||||||    
T  14096448 gtacacg--ctctacacatgatttttcttatttttccaattctatttcctctttatcactca 14096507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 18977200 - 18977134
Alignment:
Q  65 caccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 131  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggta 18977134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 7089225 - 7089280
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 133  Q
    ||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggtata 7089280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 15330735 - 15330839
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 15330832  T
Q  178 tctttat 184  Q
    |||||||    
T  15330833 tctttat 15330839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 37261773 - 37261669
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 37261676  T
Q  178 tctttat 184  Q
    |||||||    
T  37261675 tctttat 37261669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 37078947 - 37079000
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 131  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 37079000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 14810191 - 14810087
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  |||||||||| |||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 14810094  T
Q  178 tctttat 184  Q
    |||||||    
T  14810093 tctttat 14810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 16429864 - 16429968
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| ||||| |||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 16429961  T
Q  178 tctttat 184  Q
    |||||||    
T  16429962 tctttat 16429968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 17690604 - 17690708
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 17690701  T
Q  178 tctttat 184  Q
    |||||||    
T  17690702 tctttat 17690708  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 33755146 - 33755091
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 133  Q
    ||||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtata 33755091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 27286264 - 27286415
Alignment:
Q  37 taatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgc 136  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||  ||| |    
T  27286264 taatatggatcacttgcttcatatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtgg--tacac 27286361  T
Q  137 cctctacatatgatttttcttataattccatttctctctcttctttatcactca 190  Q
    |||||||| ||||||||||||||  ||||| |||||| || |||||||||||||    
T  27286362 cctctacacatgatttttcttatttttccaattctctttcctctttatcactca 27286415  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 39241634 - 39241792
Alignment:
Q  13 acacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttg 111  Q
    |||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  39241634 acacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatcttaacggttagatttacctg 39241732  T
Q  112 gcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctc 176  Q
       ||| | |||||||||  ||| || |||||| |||||||||||| ||||| || |||||||||    
T  39241733 ---tctttgttattgtgg--tacaccatctacacatgatttttcttctaattacaattctctctc 39241792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 52385939 - 52385783
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtg 128  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||| |||||| || |||||||||  |||  |||||| ||||||||    
T  52385939 acaaattctaaaatggatcacgtgtttcatatgttccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtg 52385840  T
Q  129 gtatacgccctctacatatgatttttcttataattccatttctctctcttctttatcac 187  Q
    |  ||| ||||||||| |||||||||||||   ||||| |||||| || ||||||||||    
T  52385839 g--tacaccctctacacatgatttttcttacttttccaattctctttcctctttatcac 52385783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 12981521 - 12981625
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 12981618  T
Q  178 tctttat 184  Q
    |||||||    
T  12981619 tctttat 12981625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 45325704 - 45325616
Alignment:
Q  85 catgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctct 175  Q
    |||||||||||| |||||||||| || | |||||| |||||||||||||  || |||||| |||||||||||  ||||| || ||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtata--ccatctacacatgatttttctgttaatttcaattctctct 45325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 45348344 - 45348240
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 45348247  T
Q  178 tctttat 184  Q
    |||||||    
T  45348246 tctttat 45348240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 13802805 - 13802715
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||  |||| ||||||    
T  13802805 acaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctat 13802715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 3879543 - 3879488
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 133  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 3879488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 23613575 - 23613678
Alignment:
Q  29 acaaattctaatatggatcacttgctccatatgttccaccatagacaa-gtttatttcatgatcttaacagttagatttacttggcctctatattattgt 127  Q
    ||||||||||||||||| ||||||||| |||||||||||||| || ||  ||| ||| | ||||||||| |||||||||  |||| ||| ||  ||||||    
T  23613575 acaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattgt 23613674  T
Q  128 ggta 131  Q
    ||||    
T  23613675 ggta 23613678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 531684 - 531788
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    |||||||||| || ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 531781  T
Q  178 tctttat 184  Q
    |||||||    
T  531782 tctttat 531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 30945527 - 30945452
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttctt 157  Q
    ||||||||||||||||||  ||||||||||||||   ||| |||||||||||  ||| || |||||| ||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttg--atctctattattgtgg--tacaccatctacacatgatttttctt 30945452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 30783 - 30679
Alignment:
Q  78 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgccctctacatatgatttttcttataattccatttctctctct 177  Q
    ||||||| ||||| ||||  ||||||||||||||  |||||| |||||||||  ||| || |||||| |||||||||||| || | ||| || ||||||     
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtgg--tacaccatctacacatgatttttcttctagtaccaattttctctcc 30686  T
Q  178 tctttat 184  Q
    |||||||    
T  30685 tctttat 30679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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