View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5938-Insertion-6 (Length: 1030)

Name: NF5938-Insertion-6
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5938-Insertion-6
NF5938-Insertion-6
[»] chr4 (3 HSPs)
chr4 (9-935)||(43589402-43590328)
chr4 (864-935)||(46719687-46719760)
chr4 (864-935)||(19869710-19869783)
[»] chr7 (2 HSPs)
chr7 (864-935)||(23592541-23592614)
chr7 (864-935)||(41405941-41406014)
[»] chr8 (2 HSPs)
chr8 (275-323)||(12964354-12964402)
chr8 (864-935)||(45407246-45407319)
[»] chr3 (2 HSPs)
chr3 (864-935)||(7041572-7041644)
chr3 (880-935)||(18763898-18763955)
[»] chr2 (1 HSPs)
chr2 (864-909)||(10455702-10455747)


Alignment Details
Target: chr4 (Bit Score: 718; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 9 - 935
Target Start/End: Original strand, 43589402 - 43590328
Alignment:
Q  9 gtgatgtgtcaatttcaattgtgtgtacccaaaatattctagactctgaaaaagcttgactcttctcttattttctgctaatcaaattaatttctcatgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43589402 gtgatgtgtcaatttcaattgtgtgtacccaaaatattctagactctgaaaaagcttgactcttctcttattttctgctaatcaaattaatttctcatgc 43589501  T
Q  109 attcaagatataaccgtaagtcttgatatcaccacaggatttctttgaattttgcggtgacttctttcacttttgtttgtctcactgtcaaatggattgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43589502 attcaagatataaccgtaagtcttgatatcaccacaggatttctttgaattttgcggtgacttctttcacttttgtttgtctcactgtcaaatggattgg 43589601  T
Q  209 cgcagctcgctctaccataattcgatggattttaagtttgatgactttgtctttannnnnnncaagcaatcattctctttcatcaaagtaattcagttta 308  Q
    ||||||||||||||||||||||| ||| ||||| |||||  ||||||||||||||       |||||||||||||||| |||||||||||||||||||||    
T  43589602 cgcagctcgctctaccataattcaatgaattttgagtttagtgactttgtctttattttttccaagcaatcattctctctcatcaaagtaattcagttta 43589701  T
Q  309 atcattcatgtatcagttaaatgcattaaag--attaaaatttaaagtcacttttttcttattcgattggtcaaataggtaagattgatttggcccgctt 406  Q
    |||||| |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  43589702 atcatttatgtatcagttaaatgcactaaagttattaaaatttaaagtcacttttttcttattcgattggtcaaataggtaagattgatctggcctgctt 43589801  T
Q  407 gttacacgagacttcaaacatttagcagagctcaaacattatgggctatatgtgccaatggactaaaagagtaaagcgaataatagactcataatactac 506  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  43589802 gttacacgagacttcaaacatttagcagagctcaaacattaagggctatatgtgccaatggactaaaagagtaaagcgaataatagacttataatactat 43589901  T
Q  507 tctttttgtccctaattataagcactcttnnnnnnnnnnnnnnttgtcccttagtataagctcttaaccaaattactagaagtatttattgnnnnnnnna 606  Q
    | |||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||         |    
T  43589902 tttttttgtccctaattataagcactctt-aaaaaaaaaaaatttgtcccttagtataagctcttaaccaaattactagaagtatttattatttttttta 43590000  T
Q  607 acatactcttaattaaaattattaacatgtaaaaataagacaatttcatattattcacacaaatagataaattaattaccctaactaacaacttctttta 706  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43590001 acatactcttaattaaaattattaacatgtaaaaataaaacaatttcatattattcacacaaatagataaattaattaccctaactaacaacttctttta 43590100  T
Q  707 aaagatgtgaaaacgacttatatataagaacggatgaaatattattatatactaatgctagagtaaccataaaccaatttttctcgtaactttaaaaaca 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43590101 aaagatgtgaaaacgacttatatataagaacggatgaaatattattatataccaatgctagagtaaccataaaccaatttttctcgtaactttaaaaaca 43590200  T
Q  807 aaaactagtctatccaactaaccatcttccattggcaagaagagggaattagtatggtttttatacattatcctctcttatttagcgggtatttatcctt 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||| |||||||||||||||||||||||||||    
T  43590201 aaaactagtctatccaactaaccatcttccattggcaagaagaggaaattagtatgg---ttatacattatcttctcttatttagcgggtatttatcctt 43590297  T
Q  907 tc-atatatcaactaatc-aaatgtaatata 935  Q
    || ||||||||| ||||| ||||||||||||    
T  43590298 tcaatatatcaaataatcaaaatgtaatata 43590328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 935
Target Start/End: Complemental strand, 46719760 - 46719687
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttcat-atatcaactaatc-aaatgtaatata 935  Q
    |||||||| |||| |||||||||||||| ||||||||| ||| |||| |||||||| |||| ||||||||||||    
T  46719760 tttttatagattaccctctcttatttagagggtatttaccctctcatgatatcaaccaatcaaaatgtaatata 46719687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 935
Target Start/End: Original strand, 19869710 - 19869783
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttc-atatatcaactaatc-aaatgtaatata 935  Q
    ||||| |||||||||||||||| ||||  ||||||||| |||||| | |||||||| |||| ||||||||||||    
T  19869710 tttttctacattatcctctcttgtttatagggtatttaccctttcaagatatcaaccaatcaaaatgtaatata 19869783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 935
Target Start/End: Original strand, 23592541 - 23592614
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttcat-atatcaactaatc-aaatgtaatata 935  Q
    ||||| || |||| |||||||||||||| |||||||||||||||||| |||||||  |||| ||||||||||||    
T  23592541 tttttctagattaccctctcttatttagagggtatttatcctttcatgatatcaatcaatcaaaatgtaatata 23592614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 935
Target Start/End: Original strand, 41405941 - 41406014
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttc-atatatcaactaatc-aaatgtaatata 935  Q
    ||||| ||||||| |||||||| ||||| |||||||||||| ||| | |||||||| |||| ||||||||||||    
T  41405941 tttttctacattaccctctcttgtttagggggtatttatcccttcaagatatcaaccaatcaaaatgtaatata 41406014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 12964354 - 12964402
Alignment:
Q  275 caatcattctctttcatcaaagtaattcagtttaatcattcatgtatca 323  Q
    ||||||||||||||||||||| ||||| | ||||||||||||| |||||    
T  12964354 caatcattctctttcatcaaaataatttattttaatcattcatatatca 12964402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 935
Target Start/End: Original strand, 45407246 - 45407319
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttcat-atatcaactaatc-aaatgtaatata 935  Q
    ||||| || ||||||||||||| ||||| ||||||||| || ||||| |||||||| |||| ||||||||||||    
T  45407246 tttttctagattatcctctcttgtttagagggtatttaccccttcatgatatcaaccaatcaaaatgtaatata 45407319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 935
Target Start/End: Original strand, 7041572 - 7041644
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttc-atatatcaactaatc-aaatgtaatata 935  Q
    ||||| |||||||||||||||| |||||  ||||||||||||||| | |||||||| |||| ||||||||||||    
T  7041572 tttttctacattatcctctcttgtttag-aggtatttatcctttcaagatatcaaccaatcaaaatgtaatata 7041644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 880 - 935
Target Start/End: Complemental strand, 18763955 - 18763898
Alignment:
Q  880 tctcttatttagcgggtatttatcctttcat-atatcaactaatcaa-atgtaatata 935  Q
    |||||||||||| ||||||||||||| |||| |||||||| |||||| ||||||||||    
T  18763955 tctcttatttagagggtatttatcctctcatgatatcaaccaatcaagatgtaatata 18763898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 909
Target Start/End: Complemental strand, 10455747 - 10455702
Alignment:
Q  864 tttttatacattatcctctcttatttagcgggtatttatcctttca 909  Q
    ||||| |||||||||||||||| ||||| |||||||||||| ||||    
T  10455747 tttttctacattatcctctcttgtttagagggtatttatcccttca 10455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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