View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5938_low_1 (Length: 443)
Name: NF5938_low_1
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5938_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 17126705 - 17127120
Alignment:
| Q |
18 |
ggaatgtgacttgcccgttcttgtcccagtccatttctcctatgaggaaaataaaaccagaaaagaagttagtccttttattatgacttaaatgtctttt |
117 |
Q |
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| T |
17126705 |
ggaatgtgacttgcccgttcttgtcccagtccatttctcctatgaggaaaacaaaaccagaaaagaagttagtccttttaatatgacttaaatgtctttt |
17126804 |
T |
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| Q |
118 |
aggaccatgcaaatataccactttttatttttaaccagaaggactaaagttgatattacgagaactacaaccaaaaagtgatatatttgcgcggaccaac |
217 |
Q |
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| T |
17126805 |
aggaccatgcaaatataccactttttatttttaaccagaaggactaaagttgatattacgagaactaaaaccaaaatgtgatatatttgcggggaccaac |
17126904 |
T |
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| Q |
218 |
gattaatagatcatgctagcaaagaagaattgatatgaacaatactgaatctgtttttagtgacgtgtgctggggatctttctctcgggttcgtttcatt |
317 |
Q |
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| T |
17126905 |
gattaatagatcatgctagcaaagaagaattgaaatgaacaatactgaatctgtttttagtgacgtgtgctggggatctttctctagggttcgtctcatt |
17127004 |
T |
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| Q |
318 |
cattgtcctgaccatgtctttcttgttaagcttcccatcaccattttgatcaaaaaagagaaagatttcaacgattttatcaaatacttgtccaagctgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17127005 |
cattgtcctgaccatgtctttcttgttaagcttcccatcaccattttgatcaaaaaagagaaagatttcaatgattttatcaaatacttgtccaagctgt |
17127104 |
T |
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| Q |
418 |
gctaactctgcctttg |
433 |
Q |
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| T |
17127105 |
gctaactcttcctttg |
17127120 |
T |
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