View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5938_low_2 (Length: 426)
Name: NF5938_low_2
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5938_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 26073483 - 26073083
Alignment:
| Q |
11 |
cataggggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaattgtgcactgttacagtagataatgctagctctaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
26073483 |
catagaggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaactgtgcacagttacagtagataatgctagctctaata |
26073384 |
T |
|
| Q |
111 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataactttcttaaagaggagtatatgcatctgcggtgttgtgcccatatctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
26073383 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataccttgcttaaaggggagtatatgcatctgcggtgttgtgcccatatctt |
26073284 |
T |
|
| Q |
211 |
gaatttgattgtttctgatggattatctcttatagattcatccatttctaatatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073283 |
gaatttgattgtttctgatggattatctcttatagattcatccatttctaagatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
26073184 |
T |
|
| Q |
311 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073183 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
26073084 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
26073083 |
t |
26073083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Original strand, 1670219 - 1670619
Alignment:
| Q |
11 |
cataggggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaattgtgcactgttacagtagataatgctagctctaata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
1670219 |
cataggggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaactgtgcacagttacagtagataatgctagctctaata |
1670318 |
T |
|
| Q |
111 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataactttcttaaagaggagtatatgcatctgcggtgttgtgcccatatctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1670319 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataccttgcttaaaggggagtatatgcatctgcggtgttgtgcccatatctt |
1670418 |
T |
|
| Q |
211 |
gaatttgattgtttctgatggattatctcttatagattcatccatttctaatatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1670419 |
gaatttgattgtttttgatggattatctcttatagattcatccatttctaagatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
1670518 |
T |
|
| Q |
311 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1670519 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
1670618 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
1670619 |
t |
1670619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 44272260 - 44271860
Alignment:
| Q |
11 |
cataggggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaattgtgcactgttacagtagataatgctagctctaata |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44272260 |
catagaggtgacaccataggtaaagccttagaaaaatgcttgaaagattggggaattactaaactgtgcacagttacagtagataatgctagctctaata |
44272161 |
T |
|
| Q |
111 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataactttcttaaagaggagtatatgcatctgcggtgttgtgcccatatctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44272160 |
atgttgctctatcttatttgactagaaatatgagtgcttggaatggaaataccttgcttaaaggggagtatatgcatctgcggtgttgtgcccatatctt |
44272061 |
T |
|
| Q |
211 |
gaatttgattgtttctgatggattatctcttatagattcatccatttctaatatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44272060 |
gaatttgattgtttctgatggattatctcttatagattcatccatttctaagatcagggctgcttgcaagcatgttaagtcatctccttctagattggca |
44271961 |
T |
|
| Q |
311 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44271960 |
ttgtttaaagtgtgtgtgaaagatgcaaacatttctagctcacaaaaggtagtaattgatgtagcaacaagatggaataccacatatttaatgttggagg |
44271861 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
44271860 |
t |
44271860 |
T |
|
Back To:
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