View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5938_low_3 (Length: 267)

Name: NF5938_low_3
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5938_low_3
NF5938_low_3
[»] chr4 (11 HSPs)
chr4 (130-259)||(13140327-13140456)
chr4 (1-76)||(13140198-13140273)
chr4 (19-76)||(40293337-40293394)
chr4 (1-63)||(10376141-10376203)
chr4 (130-171)||(40293244-40293285)
chr4 (137-172)||(42853942-42853977)
chr4 (137-172)||(44272843-44272878)
chr4 (130-172)||(32871855-32871897)
chr4 (28-76)||(29963707-29963755)
chr4 (136-172)||(41609711-41609747)
chr4 (136-172)||(45521611-45521647)
[»] chr7 (12 HSPs)
chr7 (1-76)||(11813446-11813521)
chr7 (1-75)||(34820698-34820772)
chr7 (130-170)||(22588987-22589027)
chr7 (136-172)||(37385265-37385301)
chr7 (137-172)||(40693561-40693596)
chr7 (138-172)||(38547313-38547347)
chr7 (130-172)||(43573569-43573611)
chr7 (130-172)||(48395251-48395293)
chr7 (135-172)||(26153649-26153686)
chr7 (136-172)||(22638916-22638952)
chr7 (136-172)||(23910283-23910319)
chr7 (136-172)||(25614853-25614889)
[»] chr2 (19 HSPs)
chr2 (3-76)||(31415112-31415185)
chr2 (1-76)||(18423659-18423733)
chr2 (130-172)||(15123962-15124004)
chr2 (134-172)||(22303206-22303244)
chr2 (136-178)||(3366429-3366471)
chr2 (138-172)||(15141476-15141510)
chr2 (130-172)||(18423787-18423829)
chr2 (130-172)||(18510678-18510720)
chr2 (130-172)||(24727616-24727658)
chr2 (130-172)||(25507258-25507300)
chr2 (130-172)||(31415241-31415283)
chr2 (130-172)||(31629607-31629649)
chr2 (1-75)||(34432392-34432466)
chr2 (130-172)||(40874287-40874329)
chr2 (134-171)||(43621978-43622015)
chr2 (136-172)||(8427555-8427591)
chr2 (136-172)||(18531604-18531640)
chr2 (136-172)||(29168728-29168764)
chr2 (136-172)||(43791834-43791870)
[»] chr5 (16 HSPs)
chr5 (1-76)||(30838260-30838335)
chr5 (1-76)||(14062730-14062805)
chr5 (130-172)||(30838391-30838433)
chr5 (133-172)||(14780450-14780489)
chr5 (130-172)||(2629821-2629863)
chr5 (130-172)||(14062859-14062901)
chr5 (137-172)||(29803228-29803263)
chr5 (137-172)||(34428163-34428198)
chr5 (130-172)||(844039-844081)
chr5 (130-172)||(8728607-8728649)
chr5 (130-172)||(41621954-41621996)
chr5 (130-172)||(42446317-42446359)
chr5 (136-172)||(19844341-19844377)
chr5 (136-172)||(31748339-31748375)
chr5 (136-172)||(32872930-32872966)
chr5 (130-178)||(38097776-38097824)
[»] chr8 (15 HSPs)
chr8 (1-76)||(21467483-21467557)
chr8 (20-76)||(26509535-26509591)
chr8 (130-172)||(45108683-45108725)
chr8 (1-74)||(13592860-13592933)
chr8 (1-62)||(23262824-23262885)
chr8 (130-172)||(13592769-13592811)
chr8 (1-48)||(45108610-45108657)
chr8 (136-172)||(40380284-40380320)
chr8 (137-172)||(9985711-9985746)
chr8 (1-48)||(26629004-26629051)
chr8 (130-172)||(21467387-21467429)
chr8 (130-172)||(26629136-26629178)
chr8 (130-172)||(30170755-30170797)
chr8 (130-175)||(39031238-39031283)
chr8 (138-178)||(11138904-11138944)
[»] chr1 (14 HSPs)
chr1 (134-172)||(7078530-7078568)
chr1 (134-172)||(34395949-34395987)
chr1 (130-172)||(35883633-35883675)
chr1 (3-63)||(35883504-35883564)
chr1 (134-172)||(11097914-11097952)
chr1 (130-167)||(19476152-19476190)
chr1 (138-171)||(3977559-3977592)
chr1 (130-171)||(41619060-41619101)
chr1 (6-59)||(49139640-49139693)
chr1 (136-172)||(16234326-16234362)
chr1 (136-172)||(24673072-24673108)
chr1 (136-172)||(32915104-32915140)
chr1 (136-172)||(34008183-34008219)
chr1 (136-172)||(47214211-47214247)
[»] scaffold0178 (1 HSPs)
scaffold0178 (130-167)||(11579-11616)
[»] scaffold0016 (1 HSPs)
scaffold0016 (136-172)||(204477-204513)
[»] chr3 (12 HSPs)
chr3 (136-172)||(50559244-50559280)
chr3 (130-177)||(3282531-3282578)
chr3 (137-172)||(45528975-45529010)
chr3 (134-172)||(2482704-2482742)
chr3 (130-172)||(25188491-25188533)
chr3 (130-172)||(41850946-41850988)
chr3 (136-169)||(41637312-41637345)
chr3 (136-172)||(1402653-1402689)
chr3 (136-172)||(32146018-32146054)
chr3 (136-172)||(34900643-34900679)
chr3 (136-172)||(48352999-48353035)
chr3 (136-172)||(49417578-49417614)
[»] scaffold0578 (1 HSPs)
scaffold0578 (130-167)||(7005-7043)
[»] scaffold0449 (1 HSPs)
scaffold0449 (130-172)||(9206-9248)
[»] scaffold0041 (1 HSPs)
scaffold0041 (138-172)||(34411-34445)
[»] chr6 (7 HSPs)
chr6 (130-172)||(13093629-13093671)
chr6 (138-172)||(32644626-32644660)
chr6 (130-172)||(35213587-35213629)
chr6 (130-171)||(10840722-10840763)
chr6 (136-172)||(27334861-27334897)
chr6 (136-172)||(27395601-27395637)
chr6 (132-172)||(33683503-33683543)
[»] scaffold1625 (1 HSPs)
scaffold1625 (130-171)||(807-848)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 130 - 259
Target Start/End: Original strand, 13140327 - 13140456
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccagtagttaagttcaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13140327 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccaatagttaagttcaaa 13140426  T
Q  230 ttagtcaattcaaacgtaccataagtatta 259  Q
    ||||||||||||||||||||||||||||||    
T  13140427 ttagtcaattcaaacgtaccataagtatta 13140456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13140198 - 13140273
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13140198 tgatatttgtacaaccaattttgtacaactcttgtgacaactacttttctcctctttctattgaacagaaacaatg 13140273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 40293394 - 40293337
Alignment:
Q  19 ttttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||| | |||||||||||||| |||| |||||||||||||||||| ||||||||    
T  40293394 ttttgtacaaatcttgtgacaactatttttttcctctttttattgaacaaaaacaatg 40293337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10376203 - 10376141
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 63  Q
    |||||||||||||||||||| | ||| | |||||| ||||| | |||||||||||||||||||    
T  10376203 tgatatttgtacaaccaattgtatacaattcttgtaacaaccatttttctcctctttttattg 10376141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 40293285 - 40293244
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  40293285 ttgtttcaaaaattgtcaaaaaattgatgtacaaatatcatt 40293244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 42853977 - 42853942
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcattt 42853942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 44272843 - 44272878
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcattt 44272878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 32871855 - 32871897
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  32871855 ttgtttcaaaagttgtcaagaaatagtggtacaaatatcattt 32871897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 29963755 - 29963707
Alignment:
Q  28 actcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||  |||||||||||||| |||||| ||| ||||||||    
T  29963755 actcttgtgacaatcacttttctcctcttcttattggacaaaaacaatg 29963707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 41609711 - 41609747
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  41609711 caaaagttgtcataaaatggatgtacaaatatcattt 41609747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 45521611 - 45521647
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  45521611 caaaagttgtcataaaatggatgtacaaatatcattt 45521647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11813521 - 11813446
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11813521 tgatatttgtacaaccaattttgtataactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 11813446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34820772 - 34820698
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 75  Q
    ||||||||| |||| ||||||||||| |||||||||||| |||||||||| || ||||||||| ||| |||||||    
T  34820772 tgatatttgcacaatcaattttgtacaactcttgtgacatctacttttcttctttttttattggacaaaaacaat 34820698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 22588987 - 22589027
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcat 170  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  22588987 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 37385265 - 37385301
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37385265 caaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 40693561 - 40693596
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40693561 aaaagttgtcaaaaaatagttgtacaaatatcattt 40693596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 38547313 - 38547347
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||| ||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcattt 38547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 43573569 - 43573611
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  43573569 ttgttgcaaaagttgtcacaaaatagatgttcaaatatcattt 43573611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 48395293 - 48395251
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  48395293 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 48395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 26153686 - 26153649
Alignment:
Q  135 tcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  26153686 tcaaaagttgtcataaaatagttgtacaaatatcattt 26153649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 22638916 - 22638952
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  22638916 caaaagttgtcataaaatagatgttcaaatatcattt 22638952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 23910283 - 23910319
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||| | ||||||||||||||||    
T  23910283 caaaagttgtcaaaaaatggttgtacaaatatcattt 23910319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 25614853 - 25614889
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  25614853 caaaagttatcaaaaaatggatgtacaaatatcattt 25614889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 31415112 - 31415185
Alignment:
Q  3 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  31415112 atatttatacaaccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 31415185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18423659 - 18423733
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  18423659 tgatatttgtacg-ccaattttgtacaactcttgtgacaactacttttcttctctttttattggacaaaaacaatg 18423733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 15123962 - 15124004
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  15123962 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 15124004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 22303244 - 22303206
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22303244 ttcaaaagttgtcaaaaaatagttgtacaaatatcattt 22303206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 3366429 - 3366471
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcatttgttttt 178  Q
    |||||||||| | |||||||||||||||||||||||| |||||    
T  3366429 caaaagttgtaataaaatagatgtacaaatatcattttttttt 3366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 15141510 - 15141476
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||| ||||||||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcattt 15141476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 18423787 - 18423829
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  18423787 ttgttttaaaagatatcaaaaaatagatgtacaaatatcattt 18423829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 18510720 - 18510678
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  18510720 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 18510678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 24727616 - 24727658
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  24727616 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 24727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 25507300 - 25507258
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  25507300 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 25507258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 31415241 - 31415283
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| || | |||||||||||||||    
T  31415241 ttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcattt 31415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 31629649 - 31629607
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  31629649 ttgttccaaaagttgtcaaaaagtagttgtacaaatatcattt 31629607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34432392 - 34432466
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaat 75  Q
    |||||||||||||||||||||||||| ||| || ||||||| | ||||   || ||||||||| ||| |||||||    
T  34432392 tgatatttgtacaaccaattttgtacaacttttttgacaaccattttttctctatttttattggacaaaaacaat 34432466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 40874287 - 40874329
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  40874287 ttgtttcaaaagttgttaaaaaatggttgtacaaatatcattt 40874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 43621978 - 43622015
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  43621978 ttcaaaagttgtcataaaatagttgtacaaatatcatt 43622015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 8427591 - 8427555
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  8427591 caaaaattgtcaaaaaatagatgttcaaatatcattt 8427555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 18531640 - 18531604
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  18531640 caaaaattgtcaaaaaatagttgtacaaatatcattt 18531604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 29168764 - 29168728
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||| | ||||||||||||||||    
T  29168764 caaaagttgtcaaaaaatggttgtacaaatatcattt 29168728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 43791834 - 43791870
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  43791834 caaaagttgtcataaaatggatgtacaaatatcattt 43791870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30838260 - 30838335
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | | ||||||||    
T  30838260 tgatatttgtacagccaattttgtacaactcttgttacaactacttttctcctctttttattggataaaaacaatg 30838335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14062730 - 14062805
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| | |||||||||| ||| ||||||||    
T  14062730 tgatatttatacaaccaattttgtacaactcttatgacaactacttttctacactttttattggacaaaaacaatg 14062805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 30838391 - 30838433
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  30838391 ttgtttcaaaagttgtcaaaaagtagatgtacaaatatcattt 30838433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 14780450 - 14780489
Alignment:
Q  133 tttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14780450 tttcaaaagttgtcaaaaagtagatgtacaaatatcattt 14780489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 2629863 - 2629821
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  2629863 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 2629821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 14062859 - 14062901
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  14062859 ttgtttcaaaagttgttaaaaaatagatgttcaaatatcattt 14062901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 29803263 - 29803228
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcattt 29803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 34428198 - 34428163
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcattt 34428163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 844081 - 844039
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||| | ||| ||||||||||||    
T  844081 ttgtttcaaaagttgtcaaaaaatggttgtgcaaatatcattt 844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 8728607 - 8728649
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  8728607 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 8728649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 41621954 - 41621996
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  41621954 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 41621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 42446317 - 42446359
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  42446317 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 42446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 19844341 - 19844377
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  19844341 caaaagttatcaaaaaatagttgtacaaatatcattt 19844377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 31748375 - 31748339
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  31748375 caaaagttgtaaaaaaatagttgtacaaatatcattt 31748339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 32872930 - 32872966
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  32872930 caaaagttgtcaaaaaatagttgttcaaatatcattt 32872966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 38097824 - 38097776
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgttttt 178  Q
    |||||||||||||||| ||||||||  |||||| ||||||||| |||||    
T  38097824 ttgtttcaaaagttgttaaaaaataattgtacagatatcattttttttt 38097776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21467557 - 21467483
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||| ||| ||||||||    
T  21467557 tgatatttgtacaaccaattttgtacaactcttgtgacaactatttttctcatc-ttttattggacaaaaacaatg 21467483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26509591 - 26509535
Alignment:
Q  20 tttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaatg 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  26509591 tttgtacaactcttgtgacaactacttttctcctctttttattggacaaaaacaatg 26509535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 45108683 - 45108725
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45108683 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 45108725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13592933 - 13592860
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattgaacataaacaa 74  Q
    ||||||||||||||  |||||||||||  ||||||||||| || ||||||||||||||||||||| | ||||||    
T  13592933 tgatatttgtacaataaattttgtacggttcttgtgacaattaattttctcctctttttattgaaaaaaaacaa 13592860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23262885 - 23262824
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttatt 62  Q
    |||||||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  23262885 tgatatttttacaaccaattttgtacaacttttgtgataactatttttctcctctttttatt 23262824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 13592811 - 13592769
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13592811 ttgtttcaaaagttgtcaaaaaataggtgtacaaatatcattt 13592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45108610 - 45108657
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 48  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||    
T  45108610 tgatatttgtacaaccaattttgtacaactcttgtgataattactttt 45108657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 40380320 - 40380284
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40380320 caaaagttgtcataaaatagatgtacaaatatcattt 40380284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 9985711 - 9985746
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9985711 aaaagttgtcataaaatagatgtacaaatatcattt 9985746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26629004 - 26629051
Alignment:
Q  1 tgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 48  Q
    |||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  26629004 tgatatttgtacaaccaattttgtacaacatttgtgacaaccactttt 26629051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 21467429 - 21467387
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  21467429 ttgttttaaaagttgtcaaaaaataaatgtataaatatcattt 21467387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 26629136 - 26629178
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  26629136 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 26629178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 30170755 - 30170797
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  30170755 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 30170797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 39031238 - 39031283
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtt 175  Q
    |||||||||||||| | ||||||||  |||||||||||||||||||    
T  39031238 ttgtttcaaaagttataaaaaaataattgtacaaatatcatttgtt 39031283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 11138944 - 11138904
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcatttgttttt 178  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  11138944 aaagttgtcacaaaatagttgtacaaatatcattttttttt 11138904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 7078530 - 7078568
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7078530 ttcaaaagttgtcacaaaatagatgtacaaatatcattt 7078568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 34395949 - 34395987
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34395949 ttcaaaagttgtcataaaatagatgtacaaatatcattt 34395987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 35883633 - 35883675
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  35883633 ttgtttcaaaagttgtcaaaaaataattgtacaaatatcattt 35883675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 35883504 - 35883564
Alignment:
Q  3 atatttgtacaaccaattttgtacgactcttgtgacaactacttttctcctctttttattg 63  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||   ||||||||||||    
T  35883504 atatttgtacaaccaattttgtacaacctttgtgacaaccactttttctctctttttattg 35883564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 11097914 - 11097952
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11097914 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 11097952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 19476152 - 19476190
Alignment:
Q  130 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 167  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  19476152 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 19476190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 3977592 - 3977559
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    |||||||||| |||||||||||||||||||||||    
T  3977592 aaagttgtcacaaaatagatgtacaaatatcatt 3977559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 41619101 - 41619060
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  41619101 ttgtctcaaaagttatcaaaaaatagttgtacaaatatcatt 41619060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 49139640 - 49139693
Alignment:
Q  6 tttgtacaaccaattttgtacgactcttgtgacaactacttttctcctcttttt 59  Q
    ||||||||| ||||||||||  ||| || ||||||||| |||||||||||||||    
T  49139640 tttgtacaatcaattttgtataacttttatgacaactatttttctcctcttttt 49139693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 16234326 - 16234362
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  16234326 caaaagttgtcataaaatggatgtacaaatatcattt 16234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24673108 - 24673072
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24673108 caaaagttgtcataaaatagatgttcaaatatcattt 24673072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 32915104 - 32915140
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  32915104 caaaagttgtcataaaatagatgttcaaatatcattt 32915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 34008219 - 34008183
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  34008219 caaaagttgtcataaaatagatgttcaaatatcattt 34008183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 47214247 - 47214211
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  47214247 caaaagttgtcataaaatagatgttcaaatatcattt 47214211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 11579 - 11616
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatat 167  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11579 ttgtttcaaaagttgtcaaaaaataaatgtacaaatat 11616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 204477 - 204513
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||||||||||||||||    
T  204477 caaaagttgtcagaaaatagatgtacaaatatcattt 204513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 50559244 - 50559280
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||| ||||||||||||||||    
T  50559244 caaaagttgtcaaaaaatagttgtacaaatatcattt 50559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 3282578 - 3282531
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttt 177  Q
    |||||||||||||||||||||||||  | |||||||||||||| ||||    
T  3282578 ttgtttcaaaagttgtcaaaaaatacttatacaaatatcatttctttt 3282531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 45528975 - 45529010
Alignment:
Q  137 aaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcattt 45529010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 2482704 - 2482742
Alignment:
Q  134 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  2482704 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 2482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 25188491 - 25188533
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  25188491 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 25188533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 41850988 - 41850946
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||||| || | ||||||||||||||||    
T  41850988 ttgtttcaaaagttgtcaaaatatggttgtacaaatatcattt 41850946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 41637312 - 41637345
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatca 169  Q
    |||||||||||||||||||| |||||||||||||    
T  41637312 caaaagttgtcaaaaaatagttgtacaaatatca 41637345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 1402689 - 1402653
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  1402689 caaaagttgtcataaaatggatgtacaaatatcattt 1402653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 32146018 - 32146054
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  32146018 caaaagttgtcaaaaaatagttgttcaaatatcattt 32146054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 34900679 - 34900643
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  34900679 caaaagttgtcataaaatagatgtacaattatcattt 34900643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 48353035 - 48352999
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  48353035 caaaagttgttaaaaaatggatgtacaaatatcattt 48352999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 49417614 - 49417578
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  49417614 caaaagttgtcataaaatagatgttcaaatatcattt 49417578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 7005 - 7043
Alignment:
Q  130 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 167  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7005 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 7043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 9248 - 9206
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  9248 ttgtttcaaaagttgtcattaaatagatgttcaaatatcattt 9206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 34445 - 34411
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||| ||||||||||||||||    
T  34445 aaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 13093671 - 13093629
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  13093671 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 32644660 - 32644626
Alignment:
Q  138 aaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||||||||| ||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcattt 32644626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 35213587 - 35213629
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcattt 35213629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 10840763 - 10840722
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  10840763 ttgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 27334897 - 27334861
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27334897 caaaagttgtcacaaaatagttgtacaaatatcattt 27334861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 27395637 - 27395601
Alignment:
Q  136 caaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27395637 caaaagttgtcacaaaatagttgtacaaatatcattt 27395601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 33683543 - 33683503
Alignment:
Q  132 gtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 172  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  33683543 gtttcaaaagttgtcaaaaaataaatatataaatatcattt 33683503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 807 - 848
Alignment:
Q  130 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 171  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  807 ttgtttcaaaagttgtcaaaaaatgattgtacaaatatcatt 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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