View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5938_low_5 (Length: 250)
Name: NF5938_low_5
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5938_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5445535 - 5445766
Alignment:
| Q |
1 |
atgaagtgaacaatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaaagatgcaggaaaaattgccggttttaatgtgat |
100 |
Q |
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| T |
5445535 |
atgaagtgaacaatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaatgatgcaggaaaaattgccggttttaatgtgat |
5445634 |
T |
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| Q |
101 |
gaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggt |
200 |
Q |
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| T |
5445635 |
gaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggt |
5445734 |
T |
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| Q |
201 |
ggtggaacattcgatgtttccttagtgaccat |
232 |
Q |
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| T |
5445735 |
ggtggaacattcgatgtttccttagtgaccat |
5445766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 5432671 - 5432586
Alignment:
| Q |
115 |
agcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggt |
200 |
Q |
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| T |
5432671 |
agcctactgtagctgttattgctaatactttggataggaaaatgtggagagaaggtgagacgaatgtacttgtgttcgatcttggt |
5432586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 5440996 - 5440919
Alignment:
| Q |
149 |
caagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttccttagt |
226 |
Q |
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| T |
5440996 |
caagaaaatgtagagagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagt |
5440919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 54396803 - 54396588
Alignment:
| Q |
5 |
agtgaacaatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaaagatgcaggaaaaattgccggttttaatgtgatgagg |
104 |
Q |
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|||||| ||||||||| | ||||||||||| || ||||| | || || | |||||||| |||||||| || ||| | ||||| |||||| ||||| |
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| T |
54396803 |
agtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgagg |
54396704 |
T |
|
| Q |
105 |
atcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggtggtg |
204 |
Q |
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| T |
54396703 |
attattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtg |
54396604 |
T |
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| Q |
205 |
gaacattcgatgtttc |
220 |
Q |
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| T |
54396603 |
gaactttcgatgtttc |
54396588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 39986019 - 39985876
Alignment:
| Q |
12 |
aatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaaagatgcaggaaaaattgccggttttaatgtgatgaggatcatca |
111 |
Q |
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| T |
39986019 |
aatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaattatca |
39985920 |
T |
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| Q |
112 |
acgagcctactgcagctgctattgcttatggtttggacaagaaa |
155 |
Q |
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| T |
39985919 |
atgagcccactgctgctgccattgcttatggtcttgacaagaaa |
39985876 |
T |
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