View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5938_low_7 (Length: 244)
Name: NF5938_low_7
Description: NF5938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5938_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 8653403 - 8653620
Alignment:
| Q |
12 |
catcactcaacccaccttcttcttcatcatcctctttctctgcaaaaaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagc |
111 |
Q |
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| T |
8653403 |
catcactcaacccaccttcttcttcatcatcctctttctcagcaaaaaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagc |
8653502 |
T |
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| Q |
112 |
tttatactcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaaactcaacctcttgtgctatcttacgccgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8653503 |
cttatactcattcaaatccatatccctcaaaggaatcaaccctcttttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgt |
8653602 |
T |
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| Q |
212 |
tctttcttcgttatgttt |
229 |
Q |
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|||||||||||||||||| |
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| T |
8653603 |
tctttcttcgttatgttt |
8653620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 9172764 - 9172607
Alignment:
| Q |
58 |
aaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagctttatactcattcaaatccatatccctcaaaggaatcaaccctctt |
157 |
Q |
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||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||| ||| |
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| T |
9172764 |
aaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaacccactt |
9172665 |
T |
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| Q |
158 |
ttcttcttcataactttactattaaactcaacctcttgtgctatcttacgccgttctt |
215 |
Q |
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| T |
9172664 |
ttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttctt |
9172607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 9172561 - 9172503
Alignment:
| Q |
171 |
ctttactattaaactcaacctcttgtgctatcttacgccgttctttcttcgttatgttt |
229 |
Q |
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|||||||||||||||||| |||||| ||||||||| || |||||||||||||||||||| |
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| T |
9172561 |
ctttactattaaactcaatctcttgagctatcttaggctgttctttcttcgttatgttt |
9172503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 9172606 - 9172562
Alignment:
| Q |
171 |
ctttactattaaactcaacctcttgtgctatcttacgccgttctt |
215 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9172606 |
ctttactattaaactcaaactcttgagctatcttacgccgttctt |
9172562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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