View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939-Insertion-1 (Length: 1025)
Name: NF5939-Insertion-1
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939-Insertion-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 856; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 9 - 1025
Target Start/End: Complemental strand, 42968041 - 42967019
Alignment:
| Q |
9 |
ttgaggatttcagtagacataaaaataagactagaacaatatcaaattcacggaaatatgaactgaaaattgagttggtaagataaatgaattgaatttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42968041 |
ttgaggatttcagtagacataaaaataagactagaacaatatcaa-ttcacgggaatatgaactgaaaattgagttggtaagataaatgaattgaatttg |
42967943 |
T |
|
| Q |
109 |
aactatttataattcatttcgattggtgcagtaaagaattcacaatcaatttgtagcttatcaaaaatcacaataaatttgaataaagtcttgtggtgac |
208 |
Q |
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|||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42967942 |
aactatgtgtaattcatttcgtttggtgcagtaaagaattcacaatcaatttgtagcttatcaaaaatcacaataaatttgaataaagtcttgtggtgac |
42967843 |
T |
|
| Q |
209 |
aataggttgagtttgtttcgttcacaaaaactgcgtatgacatgccaatatatgtgtatgtatgacttgtcatgcaagttctatgtgtgtctatgctcta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42967842 |
aataggttgagtttgtttcgttcacaaaaactgcgtatgacatgccaatatatgtgtatgtatgacttgtcatgcaagttctatgtgtgtctatgctcta |
42967743 |
T |
|
| Q |
309 |
gtcacacaggtaagataaacttttatgacccaaacatgtcaaatacaaagctcaaggctctcgtaattattgaaaaattcacagaaattcaagagtccct |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42967742 |
gtcacacaggtaagataaacttttatgacccaaacatgtcaaatacaaagctcaaggctctcgtaattattgaaaaattgacagaaattcaagagtccct |
42967643 |
T |
|
| Q |
409 |
caactcgaattgatctaaatgtgatctaagaatagactagtaatattctcaaagccaattaatcatatgttcccttaaactc-gatttatttgtttggca |
507 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42967642 |
caactcaaattgatctaaatgtgatctaagaatagactagtaatattctcaaagccaattaatcatatgttcccttaaactcagatttatttgtttggca |
42967543 |
T |
|
| Q |
508 |
tcttctgtgaaatcgattacctacaaccgacaatttaattaggagacacatcattcaaccaaatattcatctgtgtgggtaggtgtcgtatattggagga |
607 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42967542 |
ttttctgtgaaatcgattacctacaaccgacaacttaattaggagacacatcattcaaccaaatattcatctatgtgggtaggtgtcgtatattggagga |
42967443 |
T |
|
| Q |
608 |
gctccaagaatagaagtggttcgttttgtttctatacgcagtccaagatttcgtttgtgttccggcaatttctgatgtgaattcggcggatagtcccccc |
707 |
Q |
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| T |
42967442 |
gctccaagaatagaagtggttcgttttgtttctatacgcaattcaaaatttcgtttgtgttccggcgatttctgatgtgaattcggcggatcgtcccccc |
42967343 |
T |
|
| Q |
708 |
ttcctacgggttcccccatcagagcctgcttacggcacgcatgacgcatggttacaacctttgccttagcgtacaacgacttatatagaaagcatgaacc |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42967342 |
ttcctacgggttcccccatcagagcctgcttacggcacgcatgacgcatggttacaacctttgccttagtgtacaacgacttatatagaaagcatgaacc |
42967243 |
T |
|
| Q |
808 |
accccaaactcactcgatcgatggttcatggttctatgtaattagttaatcacttattccccttctccgannnnnnnngg-aaaatttggtatgacat-a |
905 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| || ||||||||||||||||| | |
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| T |
42967242 |
accccaaactcactcgatcgatggttcatggttctacgtaattagttaatcacttattcctcttcttcgattttttttggaaaaatttggtatgacataa |
42967143 |
T |
|
| Q |
906 |
ctag-ttgcttgatttcgttacggttcaccatgttcatttatcggatca-ttacttcagtttgagac-ttagacggctttct-aagagtatccgcttaac |
1001 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
42967142 |
ctagtttgtttggtttcgttacggttcaccatgttcatttatcggatcatttacttcagtttgagactttagacggctttctaaagagtatccgcttaac |
42967043 |
T |
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| Q |
1002 |
tctcaatctcatttgactttgttg |
1025 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42967042 |
tctcaatctcatttgactttgttg |
42967019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 918 - 1016
Target Start/End: Original strand, 8164162 - 8164263
Alignment:
| Q |
918 |
tttcgttacggttcaccatgttcatttatcggatca-ttacttcagtttgagactt-agacggctttctaa-gagtatccgcttaactctcaatctcatt |
1014 |
Q |
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||||||||||||||||| || ||| ||||| |||| ||||||||||||| ||||| |||||||||||||| | ||||| ||||| |||||||||||||| |
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| T |
8164162 |
tttcgttacggttcaccctgctcaattatcaaatcacttacttcagtttgggactttagacggctttctaaagggtatctgcttagctctcaatctcatt |
8164261 |
T |
|
| Q |
1015 |
tg |
1016 |
Q |
| |
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|| |
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| T |
8164262 |
tg |
8164263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 607 - 696
Target Start/End: Original strand, 15071901 - 15071990
Alignment:
| Q |
607 |
agctccaagaatagaagtggttcgttttgtttctatacgcagtccaagatttcgtttgtgttccggcaatttctgatgtgaattcggcgg |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
15071901 |
agctccaagaatagaagtggttcgttttgtttctatacgcaattcaagatttcgtttgtgttctggcgatttctgatgtgaattcggcgg |
15071990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 492 - 607
Target Start/End: Original strand, 39566638 - 39566755
Alignment:
| Q |
492 |
atttatttgtttggcatcttctgtgaaatcgattacctacaaccgacaatttaattaggagacacatcattcaaccaaatattc--atctgtgtgggtag |
589 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
39566638 |
atttatttgtttggcgtcttctgcgtaatcgattacctacaacaaacaacttaattaggagacacgtcattcaaccaaatattcatatttgtgtgggtag |
39566737 |
T |
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| Q |
590 |
gtgtcgtatattggagga |
607 |
Q |
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| T |
39566738 |
gtgtggtataatggagga |
39566755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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