View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939-Insertion-10 (Length: 457)

Name: NF5939-Insertion-10
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939-Insertion-10
NF5939-Insertion-10
[»] chr3 (35 HSPs)
chr3 (9-457)||(40328038-40328485)
chr3 (9-73)||(47738318-47738382)
chr3 (9-80)||(36864820-36864891)
chr3 (9-75)||(22426138-22426203)
chr3 (9-75)||(33114001-33114066)
chr3 (9-73)||(2754926-2754989)
chr3 (9-73)||(3089626-3089689)
chr3 (9-76)||(3137206-3137272)
chr3 (9-76)||(6042084-6042150)
chr3 (9-76)||(34482680-34482746)
chr3 (9-76)||(37216845-37216911)
chr3 (9-72)||(46919101-46919164)
chr3 (13-71)||(42921336-42921394)
chr3 (9-74)||(41224441-41224505)
chr3 (20-76)||(3456282-3456337)
chr3 (9-73)||(9796824-9796887)
chr3 (9-73)||(30385607-30385670)
chr3 (9-73)||(37522260-37522323)
chr3 (9-72)||(8320378-8320440)
chr3 (9-76)||(8361831-8361897)
chr3 (9-71)||(33145919-33145980)
chr3 (20-73)||(24343767-24343820)
chr3 (9-73)||(3574321-3574384)
chr3 (9-73)||(19650695-19650758)
chr3 (9-73)||(26612953-26613017)
chr3 (9-61)||(33839742-33839794)
chr3 (9-69)||(2754721-2754781)
chr3 (9-69)||(3574528-3574588)
chr3 (9-69)||(11347272-11347332)
chr3 (9-69)||(37217054-37217114)
chr3 (37-73)||(42298086-42298122)
chr3 (43-75)||(48161146-48161178)
chr3 (20-69)||(42297357-42297406)
chr3 (9-69)||(3456068-3456128)
chr3 (9-69)||(48160909-48160969)
[»] chr6 (23 HSPs)
chr6 (9-76)||(29693652-29693719)
chr6 (9-76)||(33696904-33696970)
chr6 (9-75)||(17705262-17705327)
chr6 (9-75)||(28675355-28675420)
chr6 (9-73)||(17175816-17175879)
chr6 (9-73)||(18365369-18365432)
chr6 (9-73)||(18370633-18370696)
chr6 (8-76)||(23290873-23290940)
chr6 (9-76)||(11548381-11548447)
chr6 (8-75)||(32702411-32702477)
chr6 (9-72)||(34238883-34238945)
chr6 (9-73)||(2309218-2309281)
chr6 (9-69)||(8515726-8515786)
chr6 (9-73)||(33695121-33695184)
chr6 (23-73)||(582522-582572)
chr6 (9-71)||(6031537-6031598)
chr6 (9-69)||(6127279-6127339)
chr6 (47-79)||(18889447-18889479)
chr6 (9-69)||(23291085-23291145)
chr6 (20-73)||(2121004-2121057)
chr6 (20-69)||(17705477-17705526)
chr6 (9-69)||(33695328-33695388)
chr6 (9-69)||(33696700-33696760)
[»] chr1 (27 HSPs)
chr1 (9-77)||(18404655-18404722)
chr1 (9-75)||(20304923-20304988)
chr1 (9-75)||(33786424-33786489)
chr1 (9-73)||(32000061-32000124)
chr1 (9-72)||(40215195-40215257)
chr1 (9-75)||(41876235-41876300)
chr1 (9-75)||(51737712-51737777)
chr1 (9-70)||(33786636-33786696)
chr1 (9-73)||(25463883-25463946)
chr1 (20-72)||(52064373-52064425)
chr1 (9-75)||(36966501-36966566)
chr1 (9-71)||(40273915-40273976)
chr1 (9-71)||(44690818-44690880)
chr1 (9-74)||(19015611-19015675)
chr1 (9-73)||(9910086-9910149)
chr1 (9-73)||(19722894-19722957)
chr1 (9-73)||(25973614-25973677)
chr1 (32-76)||(27523047-27523091)
chr1 (9-73)||(37821629-37821692)
chr1 (9-76)||(44094904-44094970)
chr1 (11-73)||(6883696-6883757)
chr1 (33-73)||(3559848-3559887)
chr1 (20-69)||(18404446-18404495)
chr1 (20-69)||(40273706-40273755)
chr1 (9-69)||(3559621-3559681)
chr1 (9-69)||(16045799-16045859)
chr1 (9-69)||(40214992-40215052)
[»] chr7 (28 HSPs)
chr7 (9-72)||(37476876-37476938)
chr7 (9-74)||(42612018-42612082)
chr7 (9-75)||(18037184-18037249)
chr7 (9-74)||(45637918-45637982)
chr7 (9-74)||(48880721-48880785)
chr7 (9-73)||(24395178-24395241)
chr7 (9-73)||(25167651-25167714)
chr7 (9-73)||(34483045-34483108)
chr7 (9-73)||(35876451-35876514)
chr7 (9-64)||(29737351-29737406)
chr7 (9-75)||(3962185-3962250)
chr7 (9-71)||(4974532-4974593)
chr7 (9-75)||(15329481-15329546)
chr7 (9-75)||(15577640-15577705)
chr7 (9-74)||(15238591-15238655)
chr7 (9-73)||(30848776-30848839)
chr7 (9-71)||(20009895-20009957)
chr7 (9-74)||(35445604-35445668)
chr7 (8-69)||(36790466-36790527)
chr7 (9-74)||(42696290-42696355)
chr7 (9-73)||(36790271-36790335)
chr7 (10-69)||(24394976-24395035)
chr7 (20-69)||(3961983-3962032)
chr7 (9-73)||(40880641-40880703)
chr7 (9-69)||(4974736-4974796)
chr7 (9-69)||(15577851-15577911)
chr7 (9-69)||(42611815-42611875)
chr7 (9-69)||(45637716-45637776)
[»] chr4 (35 HSPs)
chr4 (9-75)||(37219838-37219904)
chr4 (9-79)||(10442576-10442645)
chr4 (9-75)||(11314044-11314110)
chr4 (9-74)||(7744906-7744970)
chr4 (20-73)||(25063369-25063422)
chr4 (9-74)||(44893007-44893071)
chr4 (9-73)||(44893633-44893696)
chr4 (9-76)||(2625044-2625110)
chr4 (20-71)||(17655648-17655699)
chr4 (9-76)||(46442051-46442117)
chr4 (9-76)||(53123238-53123304)
chr4 (10-76)||(4751655-4751720)
chr4 (9-75)||(22199466-22199531)
chr4 (9-71)||(24392881-24392942)
chr4 (9-74)||(21802114-21802178)
chr4 (20-73)||(42671886-42671939)
chr4 (8-76)||(24128445-24128512)
chr4 (9-73)||(36073556-36073619)
chr4 (9-71)||(9089077-9089138)
chr4 (9-75)||(31078612-31078677)
chr4 (10-76)||(36073159-36073224)
chr4 (9-75)||(47290273-47290338)
chr4 (9-73)||(33530479-33530542)
chr4 (25-73)||(53998979-53999027)
chr4 (9-76)||(49387679-49387745)
chr4 (9-63)||(23964269-23964322)
chr4 (23-73)||(36073256-36073306)
chr4 (9-69)||(7745113-7745173)
chr4 (9-69)||(33530689-33530749)
chr4 (20-74)||(50156373-50156426)
chr4 (9-69)||(10442790-10442850)
chr4 (9-69)||(22199265-22199325)
chr4 (9-69)||(31078820-31078880)
chr4 (20-60)||(36073755-36073795)
chr4 (9-69)||(49387889-49387949)
[»] chr2 (21 HSPs)
chr2 (9-75)||(22592919-22592985)
chr2 (9-73)||(23267857-23267920)
chr2 (9-75)||(13355055-13355120)
chr2 (9-74)||(43331119-43331183)
chr2 (9-73)||(9293370-9293433)
chr2 (9-73)||(33380414-33380477)
chr2 (9-73)||(35160966-35161029)
chr2 (33-76)||(27847791-27847834)
chr2 (20-73)||(9723624-9723677)
chr2 (9-73)||(10662095-10662158)
chr2 (10-70)||(31174633-31174692)
chr2 (9-69)||(3989283-3989342)
chr2 (9-69)||(10661891-10661951)
chr2 (9-69)||(35160761-35160821)
chr2 (20-52)||(37335862-37335894)
chr2 (45-76)||(34320960-34320991)
chr2 (43-73)||(7475303-7475333)
chr2 (9-71)||(21393483-21393543)
chr2 (20-69)||(9723409-9723458)
chr2 (9-69)||(9293577-9293637)
chr2 (37-73)||(14941170-14941205)
[»] chr5 (19 HSPs)
chr5 (9-74)||(12614531-12614596)
chr5 (9-74)||(3521801-3521865)
chr5 (9-73)||(6043307-6043370)
chr5 (9-73)||(8145580-8145643)
chr5 (9-73)||(22912852-22912915)
chr5 (9-75)||(25398445-25398510)
chr5 (12-73)||(2477846-2477906)
chr5 (9-74)||(4892409-4892473)
chr5 (9-74)||(14138874-14138938)
chr5 (9-73)||(33584124-33584187)
chr5 (10-73)||(38899520-38899583)
chr5 (10-72)||(3362987-3363048)
chr5 (9-74)||(17545476-17545540)
chr5 (9-74)||(37321587-37321651)
chr5 (10-70)||(12851010-12851069)
chr5 (9-69)||(2477640-2477700)
chr5 (9-69)||(11361132-11361192)
chr5 (40-71)||(12614480-12614511)
chr5 (20-69)||(12614745-12614794)
[»] chr8 (36 HSPs)
chr8 (9-75)||(31347569-31347634)
chr8 (9-74)||(37985850-37985914)
chr8 (9-73)||(10044555-10044618)
chr8 (19-77)||(7017649-7017706)
chr8 (9-71)||(20091598-20091659)
chr8 (20-74)||(30834849-30834903)
chr8 (9-71)||(34665588-34665649)
chr8 (9-71)||(37132477-37132539)
chr8 (9-74)||(1503637-1503701)
chr8 (9-70)||(3890412-3890473)
chr8 (9-74)||(15187767-15187831)
chr8 (9-74)||(26041907-26041971)
chr8 (9-74)||(32064953-32065017)
chr8 (9-74)||(40779923-40779987)
chr8 (9-73)||(3596836-3596899)
chr8 (9-73)||(17841645-17841708)
chr8 (9-73)||(24844655-24844719)
chr8 (9-73)||(42754837-42754900)
chr8 (9-72)||(14129066-14129128)
chr8 (8-71)||(38017139-38017201)
chr8 (9-75)||(1645757-1645822)
chr8 (9-71)||(24211169-24211230)
chr8 (9-73)||(6108028-6108091)
chr8 (9-73)||(25581034-25581097)
chr8 (9-69)||(27782118-27782178)
chr8 (9-73)||(30055723-30055786)
chr8 (21-75)||(7022198-7022251)
chr8 (9-69)||(32393862-32393922)
chr8 (22-61)||(1886633-1886672)
chr8 (9-69)||(1645966-1646026)
chr8 (9-69)||(14128868-14128928)
chr8 (9-69)||(32064749-32064809)
chr8 (9-69)||(34665386-34665446)
chr8 (9-61)||(35353248-35353299)
chr8 (9-69)||(37132659-37132719)
chr8 (9-69)||(37986056-37986116)
[»] scaffold0085 (1 HSPs)
scaffold0085 (9-73)||(48056-48119)
[»] scaffold0228 (2 HSPs)
scaffold0228 (9-75)||(16191-16256)
scaffold0228 (9-75)||(26143-26208)
[»] scaffold0471 (1 HSPs)
scaffold0471 (8-76)||(13048-13115)
[»] scaffold0204 (1 HSPs)
scaffold0204 (9-73)||(4603-4666)
[»] scaffold0178 (1 HSPs)
scaffold0178 (9-73)||(11828-11891)
[»] scaffold0096 (1 HSPs)
scaffold0096 (33-73)||(41241-41280)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-73)||(85580-85642)
[»] scaffold0665 (1 HSPs)
scaffold0665 (9-69)||(3072-3132)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Original strand, 40328038 - 40328485
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttccttacaatacactcgtaatcggttgaaattcatttt 108  Q
    |||||||||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40328038 attattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatatctagcattttccttacaatacactcgtaatcggttgaaattcatttt 40328137  T
Q  109 ttaacagattttttataaactccaaatgcattagtagggnnnnnnnnn-cttttatgaaacaaaaatagtaggaaaaagatctcaaaactaatttaatac 207  Q
    ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40328138 ttaacagattttttataaactccaaatgcattagtaggaaaaaaaatatcttttatgaaacaaaaatagtaggaaaaagatctcaaaactaatttaatac 40328237  T
Q  208 atgctcaaactaactatgagggatgcatgaagaaaaccataggttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40328238 atgctcaaactaactatgagggatgcatgaagaaaaccataggttaagaaaatggaacaacacacaacagcttgaaatcaaaagtaattaatcaaacgta 40328337  T
Q  308 atnnnnnnnnnnnnggcactagtattgaattggctttgtcacaatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaac 407  Q
    ||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40328338 ataaaaaaaaaaa--gcactagtattgaattggctttgtcacaatcccttaaacaaacacttccttcctgtgccactcagaaagttacacatccacaaac 40328435  T
Q  408 ctaaaatagaatggtcatctattacttttctttctttctacaatataccc 457  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40328436 ctaaaatagaatggtcatctattacttttctttctttctataatataccc 40328485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 47738318 - 47738382
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  47738318 attattgtgccatgtcattcttgaatctttcttgataaaatcattcttgatatctaacattttcc 47738382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 36864891 - 36864820
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttccttacaat 80  Q
    |||||||||  |||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36864891 attattgtgtcatgtcattcttgaatcttttttgataaaatcattcttgatatctagcattttcctttcaat 36864820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 22426203 - 22426138
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  22426203 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctt 22426138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 33114001 - 33114066
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  33114001 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctt 33114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 2754926 - 2754989
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  2754926 attattgtgccatgtcattcttaaatctttctt-ataaaatgattcttgatatctagcattttcc 2754989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 3089626 - 3089689
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  3089626 attattgtgccatgtcattcttagatctttctt-ataaaatcattcttgatatctagcattttcc 3089689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 3137272 - 3137206
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  3137272 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctta 3137206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 6042084 - 6042150
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  6042084 attattgtgccatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcctta 6042150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 34482746 - 34482680
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  34482746 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctta 34482680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 37216911 - 37216845
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||| | |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  37216911 attattgtaccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctta 37216845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 46919101 - 46919164
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  46919101 attattctgccatgtcattattgaatcttttttgataaaatcattcttgatatctaacattttc 46919164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 42921336 - 42921394
Alignment:
Q  13 ttgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||| |||||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  42921336 ttgtgccatgtcattcttaaatatttcttgataaaatcattcttaatatctagcatttt 42921394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 41224441 - 41224505
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||    
T  41224441 attattgtgccatgtcattcttgaatatttcttgataaa-tcattcttgatatctagcattttcct 41224505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 3456282 - 3456337
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||| || |||||||||| ||||||||||||||||||||||||||||||||||    
T  3456282 atgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctta 3456337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 9796887 - 9796824
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  9796887 attattgtgacatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcc 9796824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30385607 - 30385670
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| ||||||||||||||||||| |||||||||||    
T  30385607 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatttagcattttcc 30385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 37522260 - 37522323
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||| ||| |||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  37522260 attattatgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 37522323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 8320440 - 8320378
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||||| |||||||| || |||||||||| ||||||||||| ||||||||||||||||||    
T  8320440 attattgtgccatgtcattcttgaatctttctt-ataaaatcattattgatatctagcattttc 8320378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 8361897 - 8361831
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||  |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||    
T  8361897 attattgtgtcatgtcattcttgaatatttcttgataaa-tcattcttgatatctagcattttcctta 8361831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 33145919 - 33145980
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  33145919 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcatttt 33145980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 24343767 - 24343820
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| || ||||||| ||||||||||||||||||||||||| ||||||||    
T  24343767 atgtcattcttgaatcttttttgataaaatcattcttgatatctaacattttcc 24343820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3574384 - 3574321
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||    
T  3574384 attattgtgtcatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcc 3574321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 19650758 - 19650695
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||    
T  19650758 attattgtgtcatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcc 19650695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 26612953 - 26613017
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||| ||| || |||||||||| ||||||||||| |||||||||| ||||||||    
T  26612953 attattgtgccatgttattcttgaatctttcttaataaaatcattattgatatctaacattttcc 26613017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 33839742 - 33839794
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatat 61  Q
    |||||||||  |||||||| || ||||||||||||||||||||||||||||||    
T  33839742 attattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatat 33839794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 2754781 - 2754721
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  2754781 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 2754721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 3574528 - 3574588
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  3574528 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 3574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 11347332 - 11347272
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  11347332 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 11347272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 37217054 - 37217114
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  37217054 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 37217114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 42298086 - 42298122
Alignment:
Q  37 ttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||||||||||||||||||||||| |||||||||||    
T  42298086 ttcttgataaaatcattcttgatatttagcattttcc 42298122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 48161146 - 48161178
Alignment:
Q  43 ataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||||||||||||||||||||||||||    
T  48161146 ataaaatcattcttgatatctagcattttcctt 48161178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 42297406 - 42297357
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  42297406 atgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 42297357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3456128 - 3456068
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| || ||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  3456128 attattctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcatt 3456068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 48160969 - 48160909
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| || ||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  48160969 attattctgccatatcattcttaaaattttcttgataaaatctttcttgatatatagcatt 48160909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 29693652 - 29693719
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29693652 attattctgccatgtcattcttaaatctttcttgataaaatcattcttgatatctagcattttcctta 29693719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33696904 - 33696970
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33696904 attattgtgccatgtcattcttaaatctttctt-ataaaatcattcttgatatctagcattttcctta 33696970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 17705327 - 17705262
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  17705327 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctt 17705262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 28675355 - 28675420
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  28675355 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctt 28675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 17175879 - 17175816
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  17175879 attattgtaccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcc 17175816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 18365432 - 18365369
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||    
T  18365432 attattgtgctatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcc 18365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 18370696 - 18370633
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||    
T  18370696 attattgtgctatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcc 18370633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 23290940 - 23290873
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||||| || ||||| || |||||||||| ||||||||||| ||||||||||||||||||||||    
T  23290940 aattattgtgccatatcattcttgaatctttctt-ataaaatcatttttgatatctagcattttcctta 23290873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 11548447 - 11548381
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||| ||||    
T  11548447 attattgtgccatgtcattcttgaatcgttcttgataaa-tcattcttgatatctagcatttttctta 11548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 32702411 - 32702477
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    ||||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  32702411 aattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 32702477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 34238945 - 34238883
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||||  |||||||| || |||||| ||||||||||||||||||||||||||||||||||    
T  34238945 attattgtgtcatgtcattcttgaatctt-cttgataaaatcattcttgatatctagcattttc 34238883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 2309281 - 2309218
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| ||||||||||  |||||||||||||||||||    
T  2309281 attattgtgccatgtcattcttgaatctttctt-ataaaatcatcgttgatatctagcattttcc 2309218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 8515726 - 8515786
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||||| ||||||||||||| |||||||||| |||||||    
T  8515726 attattctgccatgtcattcttaaatctgtcttgataaaatctttcttgatatatagcatt 8515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33695184 - 33695121
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  || ||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  33695184 attattgtgacatatcattcttaaatatttctt-ataaaatcattcttgatatctagcattttcc 33695121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 582572 - 582522
Alignment:
Q  23 tcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||| |||||| |||||| |||||||||||||||||||||| ||||||||    
T  582572 tcattcttaaatttttcttaataaaatcattcttgatatctaacattttcc 582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 6031598 - 6031537
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| |||||||||| || |||||||||||||||||||| || |||||    
T  6031598 attattgtgccatgtcattcttaaatctttttt-ataaaatcattcttgatatccagtatttt 6031537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 6127339 - 6127279
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  6127339 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 6127279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 18889479 - 18889447
Alignment:
Q  47 aatcattcttgatatctagcattttccttacaa 79  Q
    |||||||||||||||||||||||||||||||||    
T  18889479 aatcattcttgatatctagcattttccttacaa 18889447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 23291085 - 23291145
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  23291085 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 23291145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 2121057 - 2121004
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| || ||||||| || ||||||||||| |||||||||| ||||||||    
T  2121057 atgtcattcttgaatctttttttataaaatcatttttgatatctaacattttcc 2121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17705477 - 17705526
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  17705477 atgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 17705526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 33695328 - 33695388
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  33695328 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 33695388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 33696760 - 33696700
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  33696760 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 33696700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 18404655 - 18404722
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttccttac 77  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18404655 attattgtgccatgtcattcttaaatctttctt-ataaaatcattcttgatatctagcattttccttac 18404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 20304988 - 20304923
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  20304988 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctt 20304923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 33786489 - 33786424
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  33786489 attattgtgccatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcctt 33786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 32000124 - 32000061
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  32000124 attattgtgccatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcc 32000061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 40215195 - 40215257
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  40215195 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttc 40215257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 41876300 - 41876235
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  41876300 attattgtgctatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 41876235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 51737712 - 51737777
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  51737712 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 51737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 33786636 - 33786696
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattt 70  Q
    |||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  33786636 attattgtgccatgtcattcttgaatctttcttgat-aaatcattcttgatatctagcattt 33786696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 25463883 - 25463946
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||    
T  25463883 attattgtgccatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcc 25463946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 52064425 - 52064373
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  52064425 atgtcattcttgaatctttcttgataaaatcatttttgatatctagcattttc 52064373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 36966566 - 36966501
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||| ||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  36966566 attattgtgccatgttattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 36966501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 40273915 - 40273976
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| || ||| |||||||||||| |||||||||||||||||||||||    
T  40273915 attattgtgccatgtcattcttgaatatttcttgataaa-tcattcttgatatctagcatttt 40273976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 44690880 - 44690818
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||| ||| |||||||| || |||||||||||||||||||||| |||||||||| ||||||    
T  44690880 attattctgccatgtcattcttgaatctttcttgataaaatcattattgatatctaacatttt 44690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 19015611 - 19015675
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||| ||||||||||||    
T  19015611 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatgtagcattttcct 19015675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 9910149 - 9910086
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||| ||||||||    
T  9910149 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctaacattttcc 9910086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 19722957 - 19722894
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||||||||||| ||||||||    
T  19722957 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctaacattttcc 19722894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 25973614 - 25973677
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  25973614 attattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 25973677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 27523091 - 27523047
Alignment:
Q  32 aatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  27523091 aatctttcttgataaaatcattcttgatatataacattttcctta 27523047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 37821692 - 37821629
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  37821692 attattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 37821629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 44094904 - 44094970
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||  |||||||| ||  ||||||||| ||||||| ||||||||||||||||||||||||||    
T  44094904 attattgtgtcatgtcattcttggatctttctt-ataaaataattcttgatatctagcattttcctta 44094970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 6883696 - 6883757
Alignment:
Q  11 tattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||| ||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  6883696 tattatgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 6883757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 3559848 - 3559887
Alignment:
Q  33 atctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  3559848 atctttctt-ataaaatcattcttgatatctagcattttcc 3559887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 18404495 - 18404446
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  18404495 atgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 18404446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 40273755 - 40273706
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| || ||| |||||||| |||||| ||||||||||||||||||    
T  40273755 atgtcattcttgaatttttcttgaaaaaatctttcttgatatctagcatt 40273706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3559681 - 3559621
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||| ||||||||||| |||||||||| |||||||    
T  3559681 attattctgccatgtcattcttaaaatttttttgataaaatctttcttgatatatagcatt 3559621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 16045799 - 16045859
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  16045799 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 16045859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 40215052 - 40214992
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  40215052 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 40214992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 37476938 - 37476876
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37476938 attattgtgccatgtcattattaaatctttcttgat-aaatcattcttgatatctagcattttc 37476876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 42612018 - 42612082
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  42612018 attattgtgccatgtcattcttagatctttctt-ataaaatcattcttgatatctagcattttcct 42612082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 18037184 - 18037249
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||| | |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||    
T  18037184 attattgtaccatgtcattcttaaatctttcttgat-aaatcattgttgatatctagcattttcctt 18037249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 45637918 - 45637982
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||| |||||||||||||||||    
T  45637918 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttaatatctagcattttcct 45637982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48880785 - 48880721
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  48880785 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 48880721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 24395178 - 24395241
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||||||| || |||||||||||||||||||||||||||||||    
T  24395178 attattgtgccatgtcattcttgaatctttttt-ataaaatcattcttgatatctagcattttcc 24395241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 25167714 - 25167651
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  25167714 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 25167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 34483045 - 34483108
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||| ||||||||    
T  34483045 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctaacattttcc 34483108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 35876451 - 35876514
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||| || |||||| |||||||||||||||||||||||||||||||    
T  35876451 attattgtgccatgtcatttttagatatttctt-ataaaatcattcttgatatctagcattttcc 35876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 29737351 - 29737406
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatcta 64  Q
    |||||||||  |||| ||| ||||||||||||||||||||||||||||||||||||    
T  29737351 attattgtgacatgttattcttaaatctttcttgataaaatcattcttgatatcta 29737406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 3962185 - 3962250
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| ||  || |||||| |||||||||||||||||||||||||||||||||    
T  3962185 attattgtgccatgtcattcttggatatttctt-ataaaatcattcttgatatctagcattttcctt 3962250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 4974593 - 4974532
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| || ||||||| || |||||||||||||||||||||||||||||    
T  4974593 attattgtgccatgtcattcttgaatctttttt-ataaaatcattcttgatatctagcatttt 4974532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 15329481 - 15329546
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||| ||||||||||||||||||    
T  15329481 attattgtgccatgtcattcttgaatatttctt-ataaaatcattctttatatctagcattttcctt 15329546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 15577705 - 15577640
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||  |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||    
T  15577705 attattgtgacatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcctt 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 15238591 - 15238655
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||  |||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  15238591 attattgtgtcatgtcattcttaaatattttttgataaa-tcattcttgatatctagcattttcct 15238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30848776 - 30848839
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||| ||||||||||||||||||||||||    
T  30848776 attattgtgccatgtcattcttgaatttttctt-ataaaagcattcttgatatctagcattttcc 30848839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 20009957 - 20009895
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||  |||||||| || ||||||| ||||||||||||||| ||||||||| ||||||    
T  20009957 attattgtgtcatgtcattcttgaatcttttttgataaaatcattcatgatatctatcatttt 20009895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 35445604 - 35445668
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||  || ||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  35445604 attattgtgtcatatcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 35445668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 36790466 - 36790527
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    ||||||| ||| |||||||| |||||| ||||||||||||| | |||||||||| |||||||    
T  36790466 aattattctgccatgtcattcttaaatttttcttgataaaaactttcttgatatatagcatt 36790527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 42696290 - 42696355
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||| | |||||||| || ||| ||| |||||||||||||| |||||||||| |||||||||    
T  42696290 attattgtaccatgtcattcttgaattttttttgataaaatcattattgatatctaacattttcct 42696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 36790335 - 36790271
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||||||| ||||||||| |||| ||||||| |||||||||||    
T  36790335 attattgtgtcatgtcattcttgaatctttgttgataaaaccattattgatatttagcattttcc 36790271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 24395035 - 24394976
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    ||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  24395035 ttattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 24394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 3962032 - 3961983
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  3962032 atgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 3961983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 40880703 - 40880641
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||| ||| || ||||||||   || ||||||||||||||||||||||||||||    
T  40880703 attattgtgccatgttattttttaatctttca--atcaaatcattcttgatatctagcattttcc 40880641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 4974736 - 4974796
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  4974736 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 4974796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 15577851 - 15577911
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  15577851 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 15577911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 42611875 - 42611815
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  42611875 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 42611815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 45637776 - 45637716
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  45637776 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 45637716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 37219838 - 37219904
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37219838 attattctgccatgtcattcttaaatctttcttgataaaatcattcttgatatctaacattttcctt 37219904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 10442645 - 10442576
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttccttacaa 79  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  10442645 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcctaacaa 10442576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 11314110 - 11314044
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||  |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  11314110 attattgtgtcatgtcattcttgcatctttcttgataaaatcattcttgatatctagcattttcctt 11314044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 7744970 - 7744906
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |||||||||    
T  7744970 attattgtgcaatgtcattcttgaatctttctt-ataaaatcattcttgatatctaacattttcct 7744906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 25063422 - 25063369
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  25063422 atgtcattcttgaatctttcttgataaaatcattcttgatatctagcattttcc 25063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 44893071 - 44893007
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  44893071 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcct 44893007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 44893633 - 44893696
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  44893633 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 44893696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 2625044 - 2625110
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||| |||||||||||    
T  2625044 attattgtgctatgtcatttttgaatctttctt-ataaaatcattcttgatatctaacattttcctta 2625110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 17655648 - 17655699
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  17655648 atgtcattcttaaatctttcttgataaaatcattcttaatatctagcatttt 17655699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 46442051 - 46442117
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  46442051 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctta 46442117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 53123238 - 53123304
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  53123238 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctta 53123304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 4751655 - 4751720
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||| |||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  4751655 ttattgtgccatgtcattcttaaatttttctt-ataaaattattcttgatatctagcattttcctta 4751720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 22199466 - 22199531
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||    
T  22199466 attattgtgccatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcctt 22199531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 24392881 - 24392942
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  24392881 attattgtgctatgtcattcttaaatatttcttgat-aaatcattcttgatatctagcatttt 24392942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 21802178 - 21802114
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||  |||||||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  21802178 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcct 21802114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42671886 - 42671939
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| || ||||||||||||||||||||||||||||||||| ||||||||    
T  42671886 atgtcattcttgaatctttcttgataaaatcattcttgatatctaacattttcc 42671939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 24128445 - 24128512
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  24128445 aattattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatttttctta 24128512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 36073556 - 36073619
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  36073556 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 36073619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 9089077 - 9089138
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||    
T  9089077 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcatttt 9089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 31078677 - 31078612
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| ||| || |||||||||||||||||||||||||||||||||    
T  31078677 attattgtgccatgtcattcttgaatttttttt-ataaaatcattcttgatatctagcattttcctt 31078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 36073159 - 36073224
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||| |||||||| || ||| |||||| ||||||||||| ||||||||||||||||||||||    
T  36073159 ttattgtgccatgtcattcttgaatttttctt-ataaaatcatttttgatatctagcattttcctta 36073224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 47290273 - 47290338
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||| | |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  47290273 attattgtaccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 47290338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33530542 - 33530479
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| ||  |||||| || |||||||||||||||||||||||||||||||    
T  33530542 attattgtgccatgtcattcttggatctttttt-ataaaatcattcttgatatctagcattttcc 33530479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 53999027 - 53998979
Alignment:
Q  25 attattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||||    
T  53999027 attatttaatctttcttgataaaatcattcttgatatctaatattttcc 53998979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 49387745 - 49387679
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    |||||||||| |||||||| || ||| |||||| |||||||||| ||||||||||| |||||||||||    
T  49387745 attattgtgccatgtcattcttgaatttttctt-ataaaatcatccttgatatctaacattttcctta 49387679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 23964322 - 23964269
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatct 63  Q
    |||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  23964322 attattatgccatgtcattcttaaatctttctt-ataaaatcattcttgatatct 23964269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 36073306 - 36073256
Alignment:
Q  23 tcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  36073306 tcattcttaaatctttcttgataaaatcatttttagtatctagcattttcc 36073256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 7745113 - 7745173
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  7745113 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 7745173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 33530689 - 33530749
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||| ||||||||||||||| |||||||||| |||||||    
T  33530689 attattctgccatgtcattcttgaatttttcttgataaaatctttcttgatatatagcatt 33530749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 50156426 - 50156373
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||| || ||| |||||| |||||||||||||||||||||| |||||||||    
T  50156426 atgtcattcttgaatttttctt-ataaaatcattcttgatatctaacattttcct 50156373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 10442790 - 10442850
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  10442790 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 10442850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22199325 - 22199265
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  22199325 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 22199265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 31078820 - 31078880
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  31078820 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 31078880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 36073755 - 36073795
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgata 60  Q
    |||||||| ||||||||||||| |||||||| |||||||||    
T  36073755 atgtcattcttaaatctttcttcataaaatctttcttgata 36073795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 49387889 - 49387949
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  49387889 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 49387949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 22592919 - 22592985
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  22592919 attattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgatatctagcattttcctt 22592985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 23267920 - 23267857
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  23267920 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 23267857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 13355055 - 13355120
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||    
T  13355055 attattgtgccatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcctt 13355120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 43331119 - 43331183
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||| | |||||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  43331119 attattgtaccatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcct 43331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 9293433 - 9293370
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  9293433 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcc 9293370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 33380414 - 33380477
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  33380414 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 33380477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 35160966 - 35161029
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  35160966 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 35161029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 27847791 - 27847834
Alignment:
Q  33 atctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  27847791 atctttcttgataaaattattcttgatatctagcattttcctta 27847834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 9723624 - 9723677
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  9723624 atgtcattcttaaatatttcttgatcaaatcattcttgatatctaacattttcc 9723677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 10662095 - 10662158
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  10662095 attattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 10662158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 31174692 - 31174633
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattt 70  Q
    ||||||||  |||||||| || |||||||||| ||||||||||||||||||||||||||||    
T  31174692 ttattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattt 31174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 3989283 - 3989342
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||||  |||||||| ||  ||||||||| |||||||||||||||||||||||||||    
T  3989283 attattgtgtcatgtcattcttggatctttctt-ataaaatcattcttgatatctagcatt 3989342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10661951 - 10661891
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  10661951 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 10661891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 35160821 - 35160761
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  35160821 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 35160761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 37335862 - 37335894
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcat 52  Q
    |||||||||||||||||||||||||||||||||    
T  37335862 atgtcattattaaatctttcttgataaaatcat 37335894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 76
Target Start/End: Complemental strand, 34320991 - 34320960
Alignment:
Q  45 aaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||||||||||||||||||||||||||    
T  34320991 aaaatcattcttgatatctagcattttcctta 34320960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 7475333 - 7475303
Alignment:
Q  43 ataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||||||||||||||||||||||||    
T  7475333 ataaaatcattcttgatatctagcattttcc 7475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 21393543 - 21393483
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||  |||||||| || ||| |||||||||||| |||||||||||||||||||||||    
T  21393543 attattgtgtcatgtcattcttgaat-tttcttgataaa-tcattcttgatatctagcatttt 21393483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 9723458 - 9723409
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| ||||||||||||| |||||||| ||||| |||| |||||||    
T  9723458 atgtcattcttaaatctttcttaataaaatctttcttaatatatagcatt 9723409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 9293577 - 9293637
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  9293577 attattctgccatgtcattcttgaaaatttcttgataaaatctttcttgatatatagcatt 9293637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 14941205 - 14941170
Alignment:
Q  37 ttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14941205 ttcttgataaaatcat-cttgatatctagcattttcc 14941170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 12614596 - 12614531
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||    
T  12614596 attattgtgccatgtcattcttaaatcttttttgataaaatcatacttgatatctagcattttcct 12614531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 3521865 - 3521801
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  3521865 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcct 3521801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 6043370 - 6043307
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  6043370 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 6043307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 8145580 - 8145643
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  8145580 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcc 8145643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 22912915 - 22912852
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  22912915 attattgtgccatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcc 22912852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 25398445 - 25398510
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  25398445 attattgtgccatgtcattgttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 25398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 2477846 - 2477906
Alignment:
Q  12 attgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  2477846 attgtgccatgtcattcttagatctttctt-ataaaatcattcttgatatctagcattttcc 2477906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 4892409 - 4892473
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  4892409 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 4892473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 14138874 - 14138938
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||| |||||||||||||||||    
T  14138874 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttaatatctagcattttcct 14138938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33584187 - 33584124
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  33584187 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 33584124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 38899583 - 38899520
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||||||| |||||||| || ||| ||| || |||||||||||||||||||||||||||||||    
T  38899583 ttattgtgccatgtcattcttgaatttttttttataaaatcattcttgatatctagcattttcc 38899520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 3362987 - 3363048
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    ||||||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  3362987 ttattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttc 3363048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 17545540 - 17545476
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||  |||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  17545540 attattgtgtcatgtcattcttaaatattttttgataaa-tcattcttgatatctagcattttcct 17545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 37321651 - 37321587
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| || ||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  37321651 attattgtgccatttcattcttgaatatttctt-ataaaatcattcttgatatctagcattttcct 37321587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 12851010 - 12851069
Alignment:
Q  10 ttattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattt 70  Q
    ||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||    
T  12851010 ttattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattt 12851069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 2477700 - 2477640
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  2477700 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 2477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 11361132 - 11361192
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  11361132 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 11361192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 12614480 - 12614511
Alignment:
Q  40 ttgataaaatcattcttgatatctagcatttt 71  Q
    ||||||||||||||||||||||||||||||||    
T  12614480 ttgataaaatcattcttgatatctagcatttt 12614511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 12614745 - 12614794
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||||| || ||||||||||||||||||  |||||||||| |||||||    
T  12614745 atgtcattcttgaatctttcttgataaaatatttcttgatatatagcatt 12614794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 31347634 - 31347569
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  31347634 attattgtgccatgtcattcttgaatctttcttgataaa-tcattcttgatatctagcattttcctt 31347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 37985914 - 37985850
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  37985914 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcct 37985850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 10044555 - 10044618
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  10044555 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcc 10044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 7017706 - 7017649
Alignment:
Q  19 aatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttccttac 77  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  7017706 aatgtcattcttaaatatttcttgataaa-tcattcttgatatctagcattttccttac 7017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 20091659 - 20091598
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  20091659 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcatttt 20091598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 30834903 - 30834849
Alignment:
Q  20 atgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  30834903 atgtcattctttaatctttcttgataaaatcattcttgatatctatcattttcct 30834849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 34665588 - 34665649
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  34665588 attattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcatttt 34665649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 37132539 - 37132477
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||  ||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  37132539 attattgtgtcatgtcattcatgaatctttcttgataaaatcattcttgatatctagcatttt 37132477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 1503701 - 1503637
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  1503701 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 1503637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3890473 - 3890412
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattt 70  Q
    |||||| ||| || ||||| || |||||||||||||||||||||||||||||||||||||||    
T  3890473 attattctgccatatcattcttgaatctttcttgataaaatcattcttgatatctagcattt 3890412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 15187767 - 15187831
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||    
T  15187767 attattgtgctatgtcattcttggatctttctt-ataaaatcattcttgatatctagcattttcct 15187831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26041971 - 26041907
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  26041971 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 26041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 32064953 - 32065017
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  32064953 attattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcct 32065017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 40779987 - 40779923
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcct 74  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||||    
T  40779987 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcct 40779923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3596899 - 3596836
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| || ||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  3596899 attattgtgccatatcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 3596836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 17841708 - 17841645
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  17841708 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 17841645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 24844719 - 24844655
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||| ||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  24844719 attattttgccatgccattcttaaatctttcttgataaaatcattattgatatctaacattttcc 24844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 42754900 - 42754837
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||| | |||||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  42754900 attattgtaccatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 42754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 14129066 - 14129128
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttc 72  Q
    |||||||||| |||||||| || ||| |||||| ||||||||||||||||||||||||||||||    
T  14129066 attattgtgccatgtcattcttgaatatttctt-ataaaatcattcttgatatctagcattttc 14129128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 38017139 - 38017201
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    ||||||||||  |||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  38017139 aattattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcatttt 38017201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 1645822 - 1645757
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| ||   |||||||| |||||||||||||||||||||||||||||||||    
T  1645822 attattgtgccatgtcattcttggttctttctt-ataaaatcattcttgatatctagcattttcctt 1645757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 24211230 - 24211169
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatttt 71  Q
    |||||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||    
T  24211230 attattgtgccatgtcattcttggatctttctt-ataaaatcattcttgatatctagcatttt 24211169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 6108091 - 6108028
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  6108091 attattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 6108028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 25581097 - 25581034
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || ||| |||||| |||||||||||||||||||||||||||||||    
T  25581097 attattgtgttatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcc 25581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 27782118 - 27782178
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| ||||||||||| ||||||||||||||||||  |||||||||| |||||||    
T  27782118 attattctgccatgtcattattgaatctttcttgataaaatatttcttgatatatagcatt 27782178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30055723 - 30055786
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||  |||||||| || |||||||||| |||||||||||||| ||||||||||||||||    
T  30055723 attattgtgtcatgtcattcttgaatctttctt-ataaaatcattcttaatatctagcattttcc 30055786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 7022198 - 7022251
Alignment:
Q  21 tgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    ||||||| || |||||||||||||||| ||||| |||||||||||||||||||||    
T  7022198 tgtcattcttgaatctttcttgataaa-tcattgttgatatctagcattttcctt 7022251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 32393922 - 32393862
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||||||||||||||| |||||||||| |||||||    
T  32393922 attattctgccatgtcattcttaaaattttcttgataaaatctttcttgatatatagcatt 32393862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 1886633 - 1886672
Alignment:
Q  22 gtcattattaaatctttcttgataaaatcattcttgatat 61  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  1886633 gtcattcttgaatctttcttgataaaatcattcttgatat 1886672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 1645966 - 1646026
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| ||||| || |||||  ||||||||||||||| |||||||||| |||||||    
T  1645966 attattctgccatgtctttcttaaaattttcttgataaaatctttcttgatatatagcatt 1646026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 14128928 - 14128868
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||| ||||||||||| |||||||||| |||||||    
T  14128928 attattctgccatgtcattcttaaaattttattgataaaatctttcttgatatatagcatt 14128868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 32064809 - 32064749
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  32064809 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 32064749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34665446 - 34665386
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| || ||  ||||||||||||||| |||||||||| |||||||    
T  34665446 attattctgccatgtcattcttgaaattttcttgataaaatctttcttgatatatagcatt 34665386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 35353248 - 35353299
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatat 61  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||    
T  35353248 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatat 35353299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 37132659 - 37132719
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||| ||||||||||||||  || ||||||| |||||||    
T  37132659 attattctgccatgtcattcttaaatttttcttgataaaatattttttgatatatagcatt 37132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 37986056 - 37986116
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||| ||||||||||| |||||||||| |||||||    
T  37986056 attattctgccatgtcattcttaaaatttttttgataaaatctttcttgatatatagcatt 37986116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 48056 - 48119
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||||    
T  48056 attattgtgctatgtcattcttgaatctttctt-ataaaatcattcttgatatctagcattttcc 48119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 16191 - 16256
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  16191 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 16256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 26143 - 26208
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctt 75  Q
    |||||||||| |||||||| || ||| |||||| |||||||||||||||||||||||||||||||||    
T  26143 attattgtgccatgtcattcttgaatttttctt-ataaaatcattcttgatatctagcattttcctt 26208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 13048 - 13115
Alignment:
Q  8 aattattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcctta 76  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  13048 aattattgtgtcatgtcattcttaaatttttctt-ataaaatcattcttgatatctagcatttttctta 13115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 4603 - 4666
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| || ||||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  4603 attattgtgccatatcattcttaaatttttctt-ataaaatcattcttgatatctagcattttcc 4666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 11828 - 11891
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| ||||||||    
T  11828 attattgtgccatgtcattcttaaatttttctt-ataaaatcattcttgatatctaacattttcc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 41241 - 41280
Alignment:
Q  33 atctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  41241 atctttctt-ataaaatcattcttgatatctagcattttcc 41280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 85580 - 85642
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcattttcc 73  Q
    |||||||||| |||| ||| || ||||||||   || ||||||||||||||||||||||||||||    
T  85580 attattgtgccatgttattttttaatctttca--atcaaatcattcttgatatctagcattttcc 85642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3132 - 3072
Alignment:
Q  9 attattgtgcaatgtcattattaaatctttcttgataaaatcattcttgatatctagcatt 69  Q
    |||||| ||| |||||||| |||||  ||| ||||||||||| |||||||||| |||||||    
T  3132 attattctgccatgtcattcttaaaattttattgataaaatctttcttgatatatagcatt 3072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University