View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5939-Insertion-11 (Length: 421)
Name: NF5939-Insertion-11
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939-Insertion-11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 133 - 339
Target Start/End: Original strand, 43143050 - 43143256
Alignment:
| Q |
133 |
ttgaaaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43143050 |
ttgagaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
43143149 |
T |
|
| Q |
233 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43143150 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatat |
43143249 |
T |
|
| Q |
333 |
ctgcatc |
339 |
Q |
| |
|
||||||| |
|
|
| T |
43143250 |
ctgcatc |
43143256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 43142969 - 43143024
Alignment:
| Q |
78 |
ctggaattgaatattgctgacataatgtttgtaccgttacatatatgtgaaaaagt |
133 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43142969 |
ctggaattgaatattgctgacataatatttgtaccgttacatatatgtgaaaaagt |
43143024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University