View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939-Insertion-2 (Length: 960)

Name: NF5939-Insertion-2
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939-Insertion-2
NF5939-Insertion-2
[»] chr5 (41 HSPs)
chr5 (8-955)||(17418834-17419783)
chr5 (45-174)||(30225685-30225814)
chr5 (453-597)||(30243675-30243819)
chr5 (418-593)||(30481951-30482128)
chr5 (732-952)||(30399278-30399500)
chr5 (732-940)||(29871399-29871608)
chr5 (441-597)||(30339828-30339984)
chr5 (418-600)||(29870805-29870989)
chr5 (446-573)||(30398663-30398790)
chr5 (732-952)||(30482617-30482839)
chr5 (451-584)||(30748297-30748430)
chr5 (732-952)||(30059570-30059792)
chr5 (732-952)||(30243040-30243262)
chr5 (446-584)||(30434471-30434609)
chr5 (430-599)||(29851932-29852101)
chr5 (446-597)||(30058937-30059088)
chr5 (788-886)||(30205782-30205880)
chr5 (732-952)||(30748856-30749078)
chr5 (732-940)||(30435035-30435244)
chr5 (732-940)||(30714115-30714324)
chr5 (25-107)||(30247474-30247556)
chr5 (732-952)||(30677836-30678058)
chr5 (854-940)||(29852634-29852721)
chr5 (454-559)||(29710311-29710416)
chr5 (459-583)||(30202743-30202867)
chr5 (458-562)||(30246138-30246242)
chr5 (441-489)||(30678644-30678692)
chr5 (491-593)||(4380358-4380460)
chr5 (164-226)||(30247409-30247471)
chr5 (454-568)||(30473963-30474077)
chr5 (735-881)||(29709670-29709817)
chr5 (854-940)||(30339206-30339293)
chr5 (545-600)||(30678540-30678595)
chr5 (457-523)||(17981534-17981600)
chr5 (458-520)||(30397937-30397999)
chr5 (261-308)||(30678918-30678965)
chr5 (39-76)||(29848649-29848686)
chr5 (39-76)||(29868332-29868369)
chr5 (276-313)||(29870619-29870656)
chr5 (37-133)||(30201042-30201139)
chr5 (551-588)||(30482158-30482195)
[»] chr7 (3 HSPs)
chr7 (22-234)||(26705319-26705531)
chr7 (448-584)||(26705914-26706050)
chr7 (732-940)||(26706545-26706754)
[»] chr4 (6 HSPs)
chr4 (851-957)||(20297266-20297374)
chr4 (453-598)||(20298049-20298194)
chr4 (454-598)||(20303931-20304074)
chr4 (40-99)||(5994578-5994637)
chr4 (449-523)||(13615444-13615518)
chr4 (133-234)||(5994636-5994737)
[»] chr1 (2 HSPs)
chr1 (448-511)||(7097997-7098060)
chr1 (658-689)||(7582681-7582712)


Alignment Details
Target: chr5 (Bit Score: 866; Significance: 0; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 8 - 955
Target Start/End: Complemental strand, 17419783 - 17418834
Alignment:
Q  8 aaaagttgctatattattttacataagaaagcagattgaagtttcaaccaaaggcagaattgtgcagcacagtctgttgaaggagctcaatcaactaatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  17419783 aaaagttgctatattattttacataagaaagcagattgaagtttcaaccaaatgcagaattgtgcagcacaatctgttgaaggagctcaatcaactaatg 17419684  T
Q  108 ggggaaatcagcaatcataagaacttccactgcagagccttacacacatttatatttttgcttccctaatacaatatatgttccaacaacagtgtaacaa 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419683 ggggaaatcagcaatcataataacttccactgcagagccttacacacatttatatttttgcttccctaatacaatatatgttccaacaacagtgtaacaa 17419584  T
Q  208 gcaagtaattcctgcacatagatactatgatgaagaaaattacctgcacaactattagaaaatttctccttaggttgagcagtaaaatatctttcatgta 307  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17419583 gcaagtaattcctgcacatagatactatcatgaagaaaattacatgcacaactattagaaaatttctcctttggttgagcagtaaaatatctttcatgta 17419484  T
Q  308 ctctggtgctctttctgaagaagtcaacaatgagaaaatataaagatttttgaatagaaatcaagtcaattgcatcgtacatgtaagaaggggaaataga 407  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17419483 ctctagtgctctttctgaagaagtcaacaacgagaaaatataaagatttttgaataaaaatcaagtcaattgcatcgtacatgtaagaaggggaaataga 17419384  T
Q  408 gatcctacctgtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcg 507  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17419383 gattctacctgtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcg 17419284  T
Q  508 ctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatttccaatc 607  Q
     ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419283 ttcctctaatgttggggagtcataaatgttcagaaactcgggagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatttccaatc 17419184  T
Q  608 gtcatggttcgaaggttactaaacgagaaaggagaggaaacacctcttcgttccactttcaacaacccctctaagtttggtagttgtcgtaatatgagaa 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419183 gtcatggttcgaaggttactaaacgagaaaggagaggaaacacctcttcgttccactttcaacaacccctctaagtttggtagttgtcgtaatatgagaa 17419084  T
Q  708 actttagagatggaaaaatcctcatcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatg 807  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419083 actctagagatggaaaaatcctcatcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatg 17418984  T
Q  808 acgaaagccgcacacagttctcacaattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagt 906  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17418983 acgaaagccgcacacagttctcacaattactaagtgcaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagt 17418884  T
Q  907 tattttcaagcacttgagatttgagtgaagttg-agcacttcaagtagtt 955  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  17418883 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtt 17418834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 30225814 - 30225685
Alignment:
Q  45 gaagtttcaaccaaaggcagaattgtgcagcacagtctgttgaaggagctcaatcaactaatgggggaaatcagcaatcataagaacttccactgcagag 144  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30225814 gaagtttcaaccaaaggcagaattgtgcagcacaatctgttgaaggagctcaatcaactaatggcggaaatcagcaatcataagaacttgcactgcagag 30225715  T
Q  145 ccttacacacatttatatttttgcttccct 174  Q
    | |||||||||||||| | |||||||||||    
T  30225714 cattacacacatttatgtctttgcttccct 30225685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 453 - 597
Target Start/End: Complemental strand, 30243819 - 30243675
Alignment:
Q  453 tttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagaga 552  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||  | | |||||| |||| || |||||||||    
T  30243819 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagaga 30243720  T
Q  553 agtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 597  Q
    |||||||||||||||||||||  ||||||||| ||| ||||||||    
T  30243719 agtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30243675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 418 - 593
Target Start/End: Original strand, 30481951 - 30482128
Alignment:
Q  418 gtaaacgtctcttgcttcttaatact---ttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctct 514  Q
    |||||||||||| |||||||||| ||   | |||| ||||||||||||||||||||||||||||||||||||||  ||||| || |||||||| ||||||    
T  30481951 gtaaacgtctct-gcttcttaatcctcggtaaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctct 30482049  T
Q  515 aatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaacctt 593  Q
    ||||||||| | ||  ||||  |||||| ||||||||||||||||||||||||||||||  ||||||||| ||| ||||    
T  30482050 aatgttgggcattcccaaattgtcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctt 30482128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 732 - 952
Target Start/End: Original strand, 30399278 - 30399500
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| | ||| | |||||||||||||  |||||||||  |||||||||||| | ||  ||| ||||||   ||||  |    
T  30399278 tcatcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgc 30399377  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||| | ||||  || |  ||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||| |||||||||||||||||||||||||    
T  30399378 aattcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttga 30399477  T
Q  931 gtgaagttg-agcacttcaagta 952  Q
    |||| |||| |||||||| ||||    
T  30399478 gtgaggttgaagcacttcgagta 30399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 732 - 940
Target Start/End: Original strand, 29871399 - 29871608
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||  |||||||||| |||||||||||| | ||| ||||||||||   || |  |    
T  29871399 tcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgc 29871498  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||    |||| ||| |  || |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  29871499 aatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttga 29871598  T
Q  931 gtgaagttga 940  Q
    |||| |||||    
T  29871599 gtgaggttga 29871608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 441 - 597
Target Start/End: Complemental strand, 30339984 - 30339828
Alignment:
Q  441 actttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcag 540  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| | | |   ||  ||||    
T  30339984 acttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcag 30339885  T
Q  541 aaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 597  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  30339884 aagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30339828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 418 - 600
Target Start/End: Original strand, 29870805 - 29870989
Alignment:
Q  418 gtaaacgtctcttgcttcttaatact---ttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctct 514  Q
    |||||||||||| |||||||||| ||   | |||| |||| |||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||    
T  29870805 gtaaacgtctct-gcttcttaatcctcggtaaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctct 29870903  T
Q  515 aatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatt 600  Q
    ||||||||| |  | | |||   ||||| |||||| |||||||||||||||||||||||  ||||||||| ||| |||||||||||    
T  29870904 aatgttgggcaaccctcaattgccagaagctcaagtgaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 29870989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 446 - 573
Target Start/End: Original strand, 30398663 - 30398790
Alignment:
Q  446 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 545  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| | ||||  ||  |||||| ||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacct 30398762  T
Q  546 caagagaagtgaggtgtcgaataccctc 573  Q
    |||||||||||||||||| |||||||||    
T  30398763 caagagaagtgaggtgtctaataccctc 30398790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 732 - 952
Target Start/End: Original strand, 30482617 - 30482839
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||  |||||||||| |||||||||||| | ||| ||||||||||   || |  |    
T  30482617 tcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgc 30482716  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||| | ||||  || |  || ||||||||||||||  |||||||||||||||||| |||  || |||| |||| ||||| ||||||| |||||||||||    
T  30482717 aattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttga 30482816  T
Q  931 gtgaagttg-agcacttcaagta 952  Q
    |||| |||| ||| |||||||||    
T  30482817 gtgaggttgaagctcttcaagta 30482839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 451 - 584
Target Start/End: Original strand, 30748297 - 30748430
Alignment:
Q  451 tatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaaga 550  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| || |||||||| ||||||||||||||| | |||   || |  |||| |||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaaga 30748396  T
Q  551 gaagtgaggtgtcgaataccctctagcaagcatc 584  Q
    |||||||||||||||||||||||  |||||||||    
T  30748397 gaagtgaggtgtcgaataccctccggcaagcatc 30748430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 732 - 952
Target Start/End: Original strand, 30059570 - 30059792
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||   ||||| |||| ||||| |||||| | ||  ||||||||||   |||| ||    
T  30059570 tcatcatcatccaagtatttcagattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttac 30059669  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaa-catattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    ||    ||||| ||| |  ||||||||||||||||||| ||||||||||||| ||  ||| ||| |||||| || ||||||||||||| |||||||||||    
T  30059670 aacgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttga 30059769  T
Q  931 gtgaagttg-agcacttcaagta 952  Q
    |||| |||| || ||||||||||    
T  30059770 gtgaggttgaagaacttcaagta 30059792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 732 - 952
Target Start/End: Complemental strand, 30243262 - 30243040
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| | ||| |   |||||||||||  ||||||| || |||||||||||| | ||| ||||||||||   || |  |    
T  30243262 tcatcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgc 30243163  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||| | ||||  || |  || |||||||||||||| | ||||||||||||||||  ||| ||| |||||| || |||||||||||||||||||||||||    
T  30243162 aattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttga 30243063  T
Q  931 gtgaagttg-agcacttcaagta 952  Q
    |||| |||| |||||||||||||    
T  30243062 gtgaggttgaagcacttcaagta 30243040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 446 - 584
Target Start/End: Original strand, 30434471 - 30434609
Alignment:
Q  446 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 545  Q
    |||| |||| |||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| | |||   ||   ||||| ||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagct 30434570  T
Q  546 caagagaagtgaggtgtcgaataccctctagcaagcatc 584  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  30434571 caagagaagtgaggtgtcgaataccctccggcaagcatc 30434609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 430 - 599
Target Start/End: Original strand, 29851932 - 29852101
Alignment:
Q  430 tgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtca 529  Q
    |||||||||||| || |||| ||| ||||||||||||| |||||||||||||||||| |  |||||  | |||||||| ||||||||||||||| | |      
T  29851932 tgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaattt 29852031  T
Q  530 taaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaat 599  Q
    | |||   ||||| |||||||||||||||||||| |||||||||  ||||||||||||| |||| |||||    
T  29852032 ttaattgacagaagctcaagagaagtgaggtgtccaataccctccggcaagcatctcaatcctttacaat 29852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 446 - 597
Target Start/End: Original strand, 30058937 - 30059088
Alignment:
Q  446 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 545  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||| ||||||| || |  ||   ||  |||||| ||    
T  30058937 aactgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagct 30059036  T
Q  546 caagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 597  Q
    ||||||||||||||||||||||||||||  |||| |||| ||| ||||||||    
T  30059037 caagagaagtgaggtgtcgaataccctccggcaaacatcgcaatccttcaca 30059088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 788 - 886
Target Start/End: Original strand, 30205782 - 30205880
Alignment:
Q  788 agattgtagtttaccaaatgacgaaagccgcacacagttctcacaattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaa 886  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||  || |  |||||||||||| |||||||||||||||||||||||    
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaa 30205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 732 - 952
Target Start/End: Original strand, 30748856 - 30749078
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| |||||   | |||||   |||  |||||||||| |||||||||||| | ||| ||||||||||   || |  |    
T  30748856 tcatcatcatccaagtatttcagattattcataccatataatcttagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgc 30748955  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    || |   ||||  || |  || |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  30748956 aaatctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttga 30749055  T
Q  931 gtgaagttg-agcacttcaagta 952  Q
    |||| |||| |||||||||||||    
T  30749056 gtgaggttgaagcacttcaagta 30749078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 732 - 940
Target Start/End: Original strand, 30435035 - 30435244
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| |||||   | ||| |   |||  |||||||||| |||||||||||||| ||| ||||||||||   || |  |    
T  30435035 tcatcatcatccaagtatttcagattattcataccatatactctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgc 30435134  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||  | |||| ||| |  || |||||||||||||||| ||||||||||||||||| ||| ||| |||||| || |||| | ||||||||||||||||||    
T  30435135 aatccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttga 30435234  T
Q  931 gtgaagttga 940  Q
    |||| |||||    
T  30435235 gtgaggttga 30435244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 732 - 940
Target Start/End: Complemental strand, 30714324 - 30714115
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| || ||   | |||||  ||||  |||||||||| |||||||||||| | ||| ||||||||||   ||||  |    
T  30714324 tcatcatcatccaagtatttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgc 30714225  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaa-catattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||    ||||  || |  ||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  30714224 aatggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttga 30714125  T
Q  931 gtgaagttga 940  Q
    |||| |||||    
T  30714124 gtgaggttga 30714115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 30247556 - 30247474
Alignment:
Q  25 tttacataagaaagcagattgaagtttcaaccaaaggcagaattgtgcagcacagtctgttgaaggagctcaatcaactaatg 107  Q
    |||||||||||||||| ||||||| |||||||||||| |||| ||||||||||  |||||||||| |||||||||||||||||    
T  30247556 tttacataagaaagcaaattgaagcttcaaccaaagggagaactgtgcagcactatctgttgaagaagctcaatcaactaatg 30247474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 732 - 952
Target Start/End: Complemental strand, 30678058 - 30677836
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    |||||||||||||||||||||||||| |||||   |||||||  ||||  |||||||||| |||||||||||  | ||| ||||||||||   || |  |    
T  30678058 tcatcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaacggaagccgcacaattttgttgc 30677959  T
Q  832 aattact-aagtgtaacattaactaaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttg 929  Q
    | || || ||||  || |  || |||||||||||||||| ||||||||||||||||| ||| ||  ||||||||| ||||| ||||||| ||||||||||    
T  30677958 a-ttcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttg 30677860  T
Q  930 agtgaag-ttgagcacttcaagta 952  Q
    ||||| | || |||||||||||||    
T  30677859 agtgaggtttaagcacttcaagta 30677836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 854 - 940
Target Start/End: Original strand, 29852634 - 29852721
Alignment:
Q  854 taaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttgagtgaagttga 940  Q
    |||| |||||||||  |||||||||||||||||| ||| ||| ||||||||| |||| | |||||||||||||||||||||| |||||    
T  29852634 taaactactaagaaggcttatccaacttggtaacgataatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttga 29852721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 559
Target Start/End: Complemental strand, 29710416 - 29710311
Alignment:
Q  454 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 553  Q
    |||||||| ||| |||||||||||| |||||||||  | ||| ||||||||||| ||||||||||||| | | | |||||  | ||||| ||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttgagaaattataaaaatacagaacctcaagagaa 29710317  T
Q  554 gtgagg 559  Q
    ||||||    
T  29710316 gtgagg 29710311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 459 - 583
Target Start/End: Original strand, 30202743 - 30202867
Alignment:
Q  459 gaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgag 558  Q
    ||||||| |||||||||||||| | |||||| ||||| ||||||||||| ||||  ||| ||||| |  |  ||||  |||| || ||||| ||||||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaaccgaaaattgtcagcaaatcaagtgaagtgag 30202842  T
Q  559 gtgtcgaataccctctagcaagcat 583  Q
    ||||| |||||| ||||||||||||    
T  30202843 gtgtctaataccttctagcaagcat 30202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 30246242 - 30246138
Alignment:
Q  458 ggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtga 557  Q
    |||||||||| ||||||||||| ||||||||  ||  | | |||||||||||||| ||||||||| || | || ||| ||||||| ||| ||||||||||    
T  30246242 ggaatatgagatatcttgtcccgatcctcccatgtctccttcttgcatcgctcctttaatgttggagaatgatgaatattcagaacctcgagagaagtga 30246143  T
Q  558 ggtgt 562  Q
    |||||    
T  30246142 ggtgt 30246138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 30678692 - 30678644
Alignment:
Q  441 actttaactttatttttggaatatgagctatcttgtcccaatcctcccc 489  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  30678692 acttaaactgtatttttggaatatgagctatcttgtcccaatcctcccc 30678644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 4380358 - 4380460
Alignment:
Q  491 gttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaac 590  Q
    ||||| || |||||||| ||||||||||||||| |  ||   ||  |||||| ||||||||||||||||||||||||||||||  ||||||||| ||| |    
T  4380358 gttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatc 4380457  T
Q  591 ctt 593  Q
    |||    
T  4380458 ctt 4380460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 30247471 - 30247409
Alignment:
Q  164 tttgcttccctaatacaatatatgttccaacaacagtgtaacaagcaagtaattcctgcacat 226  Q
    ||||||||||| |  |||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  30247471 tttgcttccctcactcaatatatgttccaacaacagtgtaataagcaagtgattccagcacat 30247409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 568
Target Start/End: Original strand, 30473963 - 30474077
Alignment:
Q  454 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 553  Q
    ||||||||| || |||||||||||||| ||||| |||||||| | |||  ||||||||| |||||||||| |  |   ||| |||| ||||||||| |||    
T  30473963 ttttggaatgtgcgctatcttgtcccagtcctcaccggttcctttcttcaatcgctcctttaatgttgggcaacctcgaattttcaaaaactcaagtgaa 30474062  T
Q  554 gtgaggtgtcgaata 568  Q
    ||||||||| |||||    
T  30474063 gtgaggtgttgaata 30474077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 735 - 881
Target Start/End: Complemental strand, 29709817 - 29709670
Alignment:
Q  735 tcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcacaat 834  Q
    |||||||||||||||||||||||   |||     |||||||||||  |||||||||| |||||||||||||||| | ||| |||||||| ||||  ||||    
T  29709817 tcatcatccaagtatttcagattacgcatactgtataattccagtttttttagagatagtagtttaccaaatgaaggaaggcgcacacaattcttgcaat 29709718  T
Q  835 tactaagtgtaaca-ttaactaaattactaagaatacttatccaactt 881  Q
       |||||  || |   |||||||||||||||||||||||| ||||||    
T  29709717 ctttaagttcaagagcaaactaaattactaagaatacttattcaactt 29709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 854 - 940
Target Start/End: Complemental strand, 30339293 - 30339206
Alignment:
Q  854 taaattactaagaatacttatccaacttggtaac-atattccatcatagtaagttattttcaagcacttgagatttgagtgaagttga 940  Q
    ||||||||||||||  |||||||||||||||||| ||| ||| |||||| || ||| | ||||| | ||||||||||||||| |||||    
T  30339293 taaattactaagaaggcttatccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttga 30339206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 545 - 600
Target Start/End: Complemental strand, 30678595 - 30678540
Alignment:
Q  545 tcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatt 600  Q
    |||||||| ||||||||||||||||||||  ||||||||| ||| |||||||||||    
T  30678595 tcaagagatgtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 30678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 17981534 - 17981600
Alignment:
Q  457 tggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggg 523  Q
    ||||||||| |||||||||||||| || || |||||||| || |||||||||| ||| |||||||||    
T  17981534 tggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctccaatgttggg 17981600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 30397937 - 30397999
Alignment:
Q  458 ggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgtt 520  Q
    |||||| | |||||||||| ||| ||||| || ||||||||||||||| ||||||||||||||    
T  30397937 ggaatacgtgctatcttgttccagtcctctcctgttccgtccttgcattgctcctctaatgtt 30397999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 30678965 - 30678918
Alignment:
Q  261 attagaaaatttctccttaggttgagcagtaaaatatctttcatgtac 308  Q
    ||||||| | || ||| |||||||||||||||||||||||||||||||    
T  30678965 attagaacaattgtccgtaggttgagcagtaaaatatctttcatgtac 30678918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 29848649 - 29848686
Alignment:
Q  39 cagattgaagtttcaaccaaaggcagaattgtgcagca 76  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  29848649 cagattgaagtttcaaccaaaagcagaattgtacagca 29848686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 29868332 - 29868369
Alignment:
Q  39 cagattgaagtttcaaccaaaggcagaattgtgcagca 76  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  29868332 cagattgaagtttcaactaaaagcagaattgtgcagca 29868369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 29870619 - 29870656
Alignment:
Q  276 cttaggttgagcagtaaaatatctttcatgtactctgg 313  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29870619 cttaggatgaacagtaaaatatctttcatgtactctgg 29870656  T

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Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 30201042 - 30201139
Alignment:
Q  37 agcagattgaagtttcaacc-aaaggcagaattgtgcagcacagtctgttgaaggagctcaatcaactaatgggggaaatcagcaatcataagaactt 133  Q
    |||||||||||||||||| | ||| |||||||| || ||||   ||| ||| || ||||||||||||| || ||  | ||||||||||||||||||||    
T  30201042 agcagattgaagtttcaaactaaaagcagaattatgtagcaatatcttttggagaagctcaatcaactcataggaaagatcagcaatcataagaactt 30201139  T

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Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 588
Target Start/End: Original strand, 30482158 - 30482195
Alignment:
Q  551 gaagtgaggtgtcgaataccctctagcaagcatctcaa 588  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30482158 gaagtgaggtgtcgaataccctccggcaagcatctcaa 30482195  T

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Target: chr7 (Bit Score: 137; Significance: 5e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 26705319 - 26705531
Alignment:
Q  22 tattttacataagaaagcagattgaagtttcaaccaaaggcagaattgtgcagcacagtctgttgaaggagctcaatcaactaatgggggaaatcagcaa 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  26705319 tattttacataagaaagcaaattgaagtttcaaccaaaggcagaattgtgcagcactatctgttgaagaagctcaatcaactaatgggggaaatcagcaa 26705418  T
Q  122 tcataagaacttccactgcagagccttacacacatttatatttttgcttccctaatacaatatatgttccaacaacagtgtaacaagcaagtaattcctg 221  Q
    ||||||||||||||| || ||||| |||||||||||||||| ||||||||||| |  ||||||||||||||  ||| |||||  ||| ||||||||||||    
T  26705419 tcataagaacttccattgtagagcattacacacatttatatctttgcttccctcactcaatatatgttccataaactgtgtattaagtaagtaattcctg 26705518  T
Q  222 cacatagatacta 234  Q
     ||| ||||||||    
T  26705519 aacagagatacta 26705531  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 448 - 584
Target Start/End: Original strand, 26705914 - 26706050
Alignment:
Q  448 ctttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactca 547  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| |     ||||  |||||||||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactca 26706013  T
Q  548 agagaagtgaggtgtcgaataccctctagcaagcatc 584  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26706014 agagaagtgaggtgtcgaataccctctggcaagcatc 26706050  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 732 - 940
Target Start/End: Original strand, 26706545 - 26706754
Alignment:
Q  732 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 831  Q
    ||||||||||||||||||||||||||   |||  ||||||||||||||  || ||||||| |||||||||||| | ||| |||||||||| | ||||  |    
T  26706545 tcatcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgc 26706644  T
Q  832 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaa-catattccatcatagtaagttattttcaagcacttgagatttga 930  Q
    |||  | ||||  || |  ||||||||||||||||||||||| ||||||||||||  ||| ||| || |||||  |||||| ||||||||||||||||||    
T  26706645 aatccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttga 26706744  T
Q  931 gtgaagttga 940  Q
    |||| |||||    
T  26706745 gtgaggttga 26706754  T

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Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 851 - 957
Target Start/End: Complemental strand, 20297374 - 20297266
Alignment:
Q  851 aactaaattactaagaatacttatccaacttggtaa-catattccatcatagtaagttattttcaagcacttgagatttgagtgaagttg-agcacttca 948  Q
    ||||||||||||||||||| |||||||||||||||| || | |||||||||| || |||||| |||||||||||||||||| ||| |||| ||||||||     
T  20297374 aactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcg 20297275  T
Q  949 agtagtttc 957  Q
    |||| ||||    
T  20297274 agtactttc 20297266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 453 - 598
Target Start/End: Complemental strand, 20298194 - 20298049
Alignment:
Q  453 tttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagaga 552  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||   || |||||| ||| | | |   ||  |||||| |||||||||    
T  20298194 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagaga 20298095  T
Q  553 agtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaa 598  Q
    |||||||||| |||| || ||| ||||||||  ||| |||||||||    
T  20298094 agtgaggtgttgaatgccttctggcaagcattgcaatccttcacaa 20298049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 454 - 598
Target Start/End: Complemental strand, 20304074 - 20303931
Alignment:
Q  454 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 553  Q
    |||||||||||| |||||||||||| ||||||| || |||||   |||||| || |||| |||||||||| | ||||||||  ||| || |||||| |||    
T  20304074 ttttggaatatgcgctatcttgtcc-aatcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtgaa 20303976  T
Q  554 gtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaa 598  Q
    ||||||  ||||||||| ||  ||||||||||||| |||| ||||    
T  20303975 gtgaggaatcgaataccttcaggcaagcatctcaatcctttacaa 20303931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 5994578 - 5994637
Alignment:
Q  40 agattgaagtttcaaccaaaggcagaattgtgcagcacagtctgttgaaggagctcaatc 99  Q
    |||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||| ||||||    
T  5994578 agattgaagtttcaaccaaaagcagaattgtgtagcacaatcttttggaggagttcaatc 5994637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 13615444 - 13615518
Alignment:
Q  449 tttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggg 523  Q
    |||| |||||||||||| |||||||||||||| || ||||  ||||| ||||||||||||| ||  |||||||||    
T  13615444 tttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttcttcaatgttggg 13615518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 5994636 - 5994737
Alignment:
Q  133 tccactgcagagccttacacacatttatatttttgcttccctaatacaatatatgttccaacaacagtgtaacaagcaagtaattcctgcacatagatac 232  Q
    |||||||| ||||  ||||||||||||||| |  ||||| || | ||||  |||||||||  ||| |||||| |||||||| ||||||||| ||||| ||    
T  5994636 tccactgctgagcactacacacatttatatatcggcttcactcacacaaagtatgttccagtaactgtgtaataagcaagtgattcctgcaaatagaaac 5994735  T
Q  233 ta 234  Q
    ||    
T  5994736 ta 5994737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 7097997 - 7098060
Alignment:
Q  448 ctttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcc 511  Q
    ||||| |||||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||    
T  7097997 ctttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctcc 7098060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 689
Target Start/End: Complemental strand, 7582712 - 7582681
Alignment:
Q  658 ttccactttcaacaacccctctaagtttggta 689  Q
    ||||||||||||||||||||||||||||||||    
T  7582712 ttccactttcaacaacccctctaagtttggta 7582681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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