View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939-Insertion-4 (Length: 923)
Name: NF5939-Insertion-4
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 278 - 810
Target Start/End: Complemental strand, 43184505 - 43183973
Alignment:
| Q |
278 |
ttccttcctaattaatattttgtgtatgataattaagtccaataaactatgtcannnnnnngcttaaatttggaaagagtattttagtttaacattgcaa |
377 |
Q |
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| T |
43184505 |
ttccttcctaattaacattttgtgtatgataattaagtccaataaactatgtcatttttttgcttaaatttggaaagagtattttagtttaacattgcaa |
43184406 |
T |
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| Q |
378 |
tatgaataattttatatacatactatttcacaattagaagannnnnnnnn--aaggaacacaattacaagagttgttgacctcaaagatgttttttaaat |
475 |
Q |
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| T |
43184405 |
tatgagtaattttatatacatactatttcacaattagaagatttttgtttttaaggaacacaattacaagaattgttgacctcaaagatgttttttaaat |
43184306 |
T |
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| Q |
476 |
atggtcttgctcctgaaattgcagctggaattgaaggttgacggctgggaaaaagagaggaagaaccttgatttggacacaattaattgaagaggataag |
575 |
Q |
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| T |
43184305 |
atgatcttgctcctgaaattgcagctggaattgaaggttgacggctgggaaaaagagaggaagaaccttgatt-ggacacaattaattgaagaggataag |
43184207 |
T |
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| Q |
576 |
ggtggttgagttccttgctaaatatagaaaatttttgtgtgaaaaggagcatccaattggcttgttgatttggatttttctccgttgaattttgatttct |
675 |
Q |
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| T |
43184206 |
ggtggttgagttccttgctaaatatagaaattttttgtgtgaaaaggaccatccaattggcatgttgatttggatttttctccgttgaattttgatttct |
43184107 |
T |
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| Q |
676 |
tgatcaacaaactttgtcttgaaaaatgtttttgttaactcattgtcttgtaggctttcacaagtgggattaagattcaggagaatagatatatttgact |
775 |
Q |
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| T |
43184106 |
tgatcaacaaactttgtcttgaaaaatgtttttgttaactcattgtcttgtaggctttcacaagtgggattaagattcaggagaatagatatatttgact |
43184007 |
T |
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| Q |
776 |
ttttcgttgtttatgatgctactggtattattttt |
810 |
Q |
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| T |
43184006 |
tttt-tttgtttatgatgctactcgtattattttt |
43183973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 43184683 - 43184544
Alignment:
| Q |
9 |
tatataagttgagtttctacgtccactagacagccaccataagggtgtatgcttctctaattcaaacttaaa-aattggttcacaccaaagagttttggc |
107 |
Q |
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| T |
43184683 |
tatataagttgagtttctacgtccactagataaccaccataagggtgtatgcttctctaattcaaacttaaagaattggttcacaccaaagagttttggc |
43184584 |
T |
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| Q |
108 |
gcacatgaaaataccaaattccattggagacatattttgt |
147 |
Q |
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| T |
43184583 |
gcacatgaaaataccaaattcatatggagacatattttgt |
43184544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 43184546 - 43184505
Alignment:
| Q |
202 |
tgtgaggtttacactatctgccatataatgtctttatcaact |
243 |
Q |
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| T |
43184546 |
tgtgaggtttacactatctgctatataatgtctttatcaact |
43184505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 892 - 923
Target Start/End: Complemental strand, 43183461 - 43183430
Alignment:
| Q |
892 |
cagatttgttgaaaagatatttaatcgtttta |
923 |
Q |
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| T |
43183461 |
cagatttgttgaaaagatatttaatcgtttta |
43183430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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