View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939-Insertion-5 (Length: 919)
Name: NF5939-Insertion-5
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 272 - 702
Target Start/End: Complemental strand, 2159479 - 2159049
Alignment:
| Q |
272 |
atcattttgatcgtttggagcatgattattgcatcactttatcattactaattggtaagtgatctctagtgaagatatagtattcaaaaggaattaagaa |
371 |
Q |
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| T |
2159479 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtcatctctagtgaagatatagtattcaaaaggaattaagaa |
2159380 |
T |
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| Q |
372 |
accatagcagttatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctcctatctagaccaa |
471 |
Q |
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| T |
2159379 |
accatagcaattatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctcctatatagaccaa |
2159280 |
T |
|
| Q |
472 |
ctacgattttgtttatctaagtagaaacatcatttatgaataaagtacactgaatgtggtgttttggatttgaggccacgttactttagaggtacctttc |
571 |
Q |
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| T |
2159279 |
ctacgattttgtttatctaagtagaaacatcatttatgaataaagtacaccgaatgtggtgttttggatttgaggtcacgttactttagaggtacctttc |
2159180 |
T |
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| Q |
572 |
taattcaaatgtagaaatctcataattgtgcaaggttttgataaatcaacatcatacggtacaacatatgcttccatgtcagcatcaaccaaaattctag |
671 |
Q |
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| T |
2159179 |
caattcgaatgtagaaatttcataattgtgcaaggttttgataaatcaatatcatacggtacaacatatgcttccatgtcagcatcaaccaaaattctag |
2159080 |
T |
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| Q |
672 |
cttgactttctataaatttgagtatcttaaa |
702 |
Q |
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| T |
2159079 |
cttgactttctataaatttgagtatcttaaa |
2159049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 698 - 832
Target Start/End: Complemental strand, 2159029 - 2158895
Alignment:
| Q |
698 |
ttaaaaaacaattgttcctgatagaattcaattgtgaatcattatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaattgagtgg |
797 |
Q |
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| T |
2159029 |
ttaaaaaacaattgttcctgatagaattcaattgtgaatcattatgtagtccattctcatttaacatcaaattcaaatatttaccatatcaattgagtgg |
2158930 |
T |
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| Q |
798 |
gccgcggtgttgggccgtattaaggggtggtgcag |
832 |
Q |
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| T |
2158929 |
gccgcggtgttgggccgtattaagggttggtgcag |
2158895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 2159633 - 2159515
Alignment:
| Q |
161 |
cttgttttaattactcaagtatgcctactttgagttacgataaaccaccctaaaatctaaaaacagcagcatccttggaatcttattcatacttctgaaa |
260 |
Q |
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| T |
2159633 |
cttgttttaattactcaagtatgcctactttgagttacgataaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaa |
2159534 |
T |
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| Q |
261 |
acaagtgcaatatcatttt |
279 |
Q |
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| T |
2159533 |
acaagtgcaatatcatttt |
2159515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 825 - 915
Target Start/End: Complemental strand, 2158858 - 2158766
Alignment:
| Q |
825 |
tggtgcagtggaagagggaagagggaagaggatgggatcgcgaaagtttgcagag-aagagggagatctgaactctttaa-gtggggtcatga |
915 |
Q |
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| T |
2158858 |
tggtgcagtggaagagagaagagggaagaggatgggatcgcgaaagtttgcagagaaagagggagatctgaactctttaaggtggggtcatga |
2158766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 2159783 - 2159684
Alignment:
| Q |
9 |
tattatacttttctttatagcttttacattcttgcagttcaaagagaaaaaagcagaagnnnnnnnnctcataaatacatataaatatataggtacatta |
108 |
Q |
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| T |
2159783 |
tattatacttttctttatagcttttacattcttgctgttcaaagagaaaaaagcagaagaaaaaaaactcataaatacatataaatatata-gtacatta |
2159685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 2162114 - 2162058
Alignment:
| Q |
222 |
aacagcagcatccttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
278 |
Q |
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| T |
2162114 |
aacagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcattt |
2162058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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