View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939-Insertion-8 (Length: 810)
Name: NF5939-Insertion-8
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 384 - 799
Target Start/End: Complemental strand, 53676596 - 53676183
Alignment:
| Q |
384 |
taaggttagccgaatagaagcaattaggacacgatctttataggtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
483 |
Q |
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| T |
53676596 |
taaggttagccgaataatagcaattaggacacgatctttatatgtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
53676497 |
T |
|
| Q |
484 |
tgtaatttgtaaactttatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtcacacttaaccctctttgtagaagctaagaa |
583 |
Q |
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| T |
53676496 |
tgtaatttgtaaactatatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtgacacttaaacctctttgtagaagctaagaa |
53676397 |
T |
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| Q |
584 |
acacgcagtgaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcaca |
683 |
Q |
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| T |
53676396 |
acacgcagtcaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcacagtccccttgcaca |
53676297 |
T |
|
| Q |
684 |
aaataaaacctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttggtagttagagacagaaatattttccacttt |
783 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
53676296 |
aaataaaacctctaatgctgttgtgtatgtcaaaaataatgaaggctatgtggcaaccttgcaaggtttg--atttagagacagaaatattttccacttt |
53676199 |
T |
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| Q |
784 |
atcatccatcagaaaa |
799 |
Q |
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| T |
53676198 |
atcatccatcagaaaa |
53676183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 53676996 - 53676622
Alignment:
| Q |
9 |
ctaaaagtaacatgtaatggattttcggttcatcatgctacaatcagttggacatttgtttacactaaaaaatattctaaattgtaagctgggaacgaca |
108 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53676996 |
ctaaaagtaacatgtaatggattttcggctcatcgtgctacaatcagttggacatttgtttacactaaaaaatattctaaattgtaagccgggaacgaca |
53676897 |
T |
|
| Q |
109 |
tgaagcaaaatttagggtaagtcagtttctatagccgagtgtataataaattgatattagaaaagtcgaggattgtttagtcgagtcattcttatgtgga |
208 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
53676896 |
tgaagcaaaatttagggtaagttaatttctatagccgagtgtataatcaattgatattagaaaagtcgaagattgtttagtcgaatcattcttatatgga |
53676797 |
T |
|
| Q |
209 |
gagggtctcaatgtaagtggataatttagtctaaagaatctactttttgttttcaagccttcgaataacaaacacagctagaatctaggaagcgttatcn |
308 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676796 |
gaggggctcaatgtaagtggataatttaatctaaagaatctacttcttgttttcaagccttcgaataacaaacacagctagaatctaggaagcgttatca |
53676697 |
T |
|
| Q |
309 |
nnnnnnnnnnnnnnnnntgcgcttgaaatgagtaatagaacaagacacataaagaccaacactataaaaaataac |
383 |
Q |
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| T |
53676696 |
aagagagagagagagaatatgcttgaaatgagtaatagaacaagacacataaagaccaatactatacaaaataac |
53676622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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