View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5939-Insertion-9 (Length: 480)

Name: NF5939-Insertion-9
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5939-Insertion-9
NF5939-Insertion-9
[»] chr6 (4 HSPs)
chr6 (319-479)||(33033027-33033186)
chr6 (125-235)||(33032796-33032906)
chr6 (145-235)||(33051060-33051148)
chr6 (62-97)||(33032608-33032643)
[»] chr4 (2 HSPs)
chr4 (174-235)||(8264038-8264099)
chr4 (174-235)||(8277456-8277517)
[»] chr7 (1 HSPs)
chr7 (180-220)||(7975171-7975211)
[»] chr5 (1 HSPs)
chr5 (180-220)||(13838199-13838239)
[»] chr3 (1 HSPs)
chr3 (180-220)||(1293852-1293892)
[»] chr2 (2 HSPs)
chr2 (180-220)||(26543756-26543796)
chr2 (180-215)||(43313163-43313198)
[»] chr1 (1 HSPs)
chr1 (176-220)||(9901073-9901117)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 319 - 479
Target Start/End: Original strand, 33033027 - 33033186
Alignment:
Q  319 tggactcatctatttgctccatgatctactagcagtaattt-aaaacaaacaccattgtttgacactatgaaagtctagtagatatctagtctttagtga 417  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||| ||| |||||||||||||||||||||    
T  33033027 tggactcatccatttgctccatgatctactagcagtaattttaaaacaaacaccattatttgacact--gaaagactaatagatatctagtctttagtga 33033124  T
Q  418 tcttagcttgttcaaattcaatgtttatttttaggccaaatacctccctggataagtttcac 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33033125 tcttagcttgttcaaattcaatgtttatttttaggccaaatacctccctgggtaagtttcac 33033186  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 33032796 - 33032906
Alignment:
Q  125 aaaatagaaatttgatcggatcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgttt 224  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032796 aaaatagaaatttgatctgatcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgttt 33032895  T
Q  225 ccgtgctgata 235  Q
    |||||||||||    
T  33032896 ccgtgctgata 33032906  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 33051060 - 33051148
Alignment:
Q  145 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 235  Q
    |||||||||| ||||| |||| |  ||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  33051060 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctcatgtttcaatgctgata 33051148  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 33032608 - 33032643
Alignment:
Q  62 tgatttataattttgtctgttacacaactttattta 97  Q
    |||| |||||||||||||||||||||||||||||||    
T  33032608 tgatgtataattttgtctgttacacaactttattta 33032643  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 8264038 - 8264099
Alignment:
Q  174 tttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 235  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgata 8264099  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 8277456 - 8277517
Alignment:
Q  174 tttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgata 235  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| || | |||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgata 8277517  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 7975171 - 7975211
Alignment:
Q  180 ggctatgatgagtcatagagatagtcatgcaccactctgat 220  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat 7975211  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 13838239 - 13838199
Alignment:
Q  180 ggctatgatgagtcatagagatagtcatgcaccactctgat 220  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat 13838199  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 1293892 - 1293852
Alignment:
Q  180 ggctatgatgagtcatagagatagtcatgcaccactctgat 220  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat 1293852  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 26543796 - 26543756
Alignment:
Q  180 ggctatgatgagtcatagagatagtcatgcaccactctgat 220  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat 26543756  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 43313198 - 43313163
Alignment:
Q  180 ggctatgatgagtcatagagatagtcatgcaccact 215  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43313198 ggctatgatgaatcatagagatagtcatgcaccact 43313163  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 9901117 - 9901073
Alignment:
Q  176 tattggctatgatgagtcatagagatagtcatgcaccactctgat 220  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||    
T  9901117 tattggctatgatgaattttagagatagtcatgcaccactctgat 9901073  T

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