View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_10 (Length: 463)
Name: NF5939_high_10
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 913323 - 913756
Alignment:
| Q |
20 |
taacggctcagcagcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagactc---ggtaccggtaattgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
913323 |
taacggctcagcagcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgt |
913422 |
T |
|
| Q |
117 |
gtagttaatgagtaatgacactgtctctttattgtattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagat |
216 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
913423 |
gtagttaatgagtaatgacactgtctttttactgtattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagat |
913522 |
T |
|
| Q |
217 |
taaatttctgttggtttttgaattttcagttttcagatgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
913523 |
taaatttctgttggtttttgaattttcagttttcagatgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacat |
913622 |
T |
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| Q |
317 |
gttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
913623 |
gttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaaatg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatg |
913720 |
T |
|
| Q |
417 |
tttggaaattcttgttttgtccaatctgaagttcat |
452 |
Q |
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| T |
913721 |
tttggaaattcttgttttgtccaatctgaagttcat |
913756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 889093 - 888681
Alignment:
| Q |
20 |
taacggctcagcagcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagactc---ggtaccggtaattgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
889093 |
taacggctcagcagcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgt |
888994 |
T |
|
| Q |
117 |
gtagttaatgagtaatgacactgtctctttattgtattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagat |
216 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888993 |
gtagttaatgagtaatgacactgtctttttactgtattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagat |
888894 |
T |
|
| Q |
217 |
taaatttctgttggtttttgaattttcagttttcagatgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
888893 |
taaatttctgttggtttttgaattttcagttttcagatgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacat |
888794 |
T |
|
| Q |
317 |
gttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
888793 |
gttatttgcatttatctcaccgtgcgttgaatttgctttagtgtttacaaaatg--attcaagtaaatctgtgaaatgaggttcctgagaaggtaaaatg |
888696 |
T |
|
| Q |
417 |
tttggaaattcttgt |
431 |
Q |
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||||||||||||||| |
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| T |
888695 |
tttggaaattcttgt |
888681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 1002602 - 1002690
Alignment:
| Q |
342 |
gttgaatttgctttagtgtttacaaaatgatatgaaagtaaatctgtgaaatgaggttcctgagaaggtaaaatgtttggaaattcttgt |
431 |
Q |
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| T |
1002602 |
gttgaatttgctttagtgtttgcaaaatgatgtgaaaataaatctgtgaaatgaggatcctgagaaggt-aaatgtttggaaattcttgt |
1002690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 1002085 - 1002189
Alignment:
| Q |
32 |
agcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgtagttaatgag |
128 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| || || ||| |||||| ||||||||||||||||||||||||||||| |
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| T |
1002085 |
agcgaggtgaaaggtcttttg-gaggatgtgaacaacatggttgaatctacttcgtcttgaaaaagacacatcggtaccggtaattgtgtagttaatgag |
1002183 |
T |
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| Q |
129 |
taatga |
134 |
Q |
| |
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|||||| |
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| T |
1002184 |
taatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 1002403 - 1002496
Alignment:
| Q |
253 |
atgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
346 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||| | ||||||| ||| || |||||||||||| || |||||||||||| |||| |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttgctttcatctcaccgtgcattga |
1002496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 913739 - 913786
Alignment:
| Q |
299 |
gtccaatatgaagaacatgttatttgcatttatctcaccgtgcgttga |
346 |
Q |
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| T |
913739 |
gtccaatctgaagttcatgttattcgcatttatctcaccgtgcgttga |
913786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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