View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5939_high_15 (Length: 417)
Name: NF5939_high_15
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 52 - 400
Target Start/End: Complemental strand, 35626037 - 35625689
Alignment:
| Q |
52 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35626037 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
35625938 |
T |
|
| Q |
152 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35625937 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
35625838 |
T |
|
| Q |
252 |
ttcagaactcatgtactacccatgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaatta |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35625837 |
ttcagaactcatgtactacccatgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaatta |
35625738 |
T |
|
| Q |
352 |
ttaactacaaaattacttgttgcggaaatagtcatggatggcttgcatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35625737 |
ttaactacaaaattacttgttgcggaaatagtcatggatggcttgcatt |
35625689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35626269 - 35626221
Alignment:
| Q |
13 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35626269 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
35626221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 35629499 - 35629450
Alignment:
| Q |
299 |
atgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaa |
348 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| |||||||||| |||| |
|
|
| T |
35629499 |
atgtttgtatagcatttcagcgaagaaaatgtatccatttaaattgccaa |
35629450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 4235404 - 4235533
Alignment:
| Q |
118 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
217 |
Q |
| |
|
|||||| |||||||||||||||| | || |||| || ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
4235404 |
attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg |
4235503 |
T |
|
| Q |
218 |
atcaattgcaaagtttaaccatcaaaatca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4235504 |
atcaattgcaaagtttaaccatcaaaatca |
4235533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 49144997 - 49145162
Alignment:
| Q |
118 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
217 |
Q |
| |
|
|||||| |||||||||||| ||||| || ||| |||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
49144997 |
attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg |
49145096 |
T |
|
| Q |
218 |
atcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacccatgctaatgat |
283 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||| || ||| |||||||||||||||||| |
|
|
| T |
49145097 |
atcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
49145162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 49149524 - 49149668
Alignment:
| Q |
98 |
attcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggt |
197 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||| |||| || | || ||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
49149524 |
attcaacacaatggagagagattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggt |
49149623 |
T |
|
| Q |
198 |
gccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaa |
242 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
49149624 |
gctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa |
49149668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28614673 - 28614756
Alignment:
| Q |
161 |
caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaa |
244 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
28614673 |
caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaa |
28614756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 28621265 - 28621396
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
253 |
Q |
| |
|
|||||||||| || ||||||| || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| || || |
|
|
| T |
28621265 |
ttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt |
28621364 |
T |
|
| Q |
254 |
cagaactcatgtactacccatgctaatgatcc |
285 |
Q |
| |
|
|| | | || ||| ||||||||| ||||||| |
|
|
| T |
28621365 |
tagcattaatataccacccatgctcatgatcc |
28621396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 28613035 - 28612946
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaa |
243 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| |||| | || ||||||||||| |||| |||| |||||||| |||||||||||| |
|
|
| T |
28613035 |
ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaa |
28612946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 29269810 - 29269941
Alignment:
| Q |
154 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
253 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| |||| |||| |||||||||| || | ||||||||||||| |||||||| ||||||| || || |
|
|
| T |
29269810 |
ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatt |
29269909 |
T |
|
| Q |
254 |
cagaactcatgtactacccatgctaatgatcc |
285 |
Q |
| |
|
|| | | |||||| ||| ||| ||||||||| |
|
|
| T |
29269910 |
taggattgatgtaccacctatgttaatgatcc |
29269941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University