View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5939_high_17 (Length: 405)
Name: NF5939_high_17
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 9075665 - 9075813
Alignment:
| Q |
17 |
atatagcaaaccaattatttgaggagcttcgattgcagtgattagatttaaaacttt-aacacttgaatttcaattttttggtataatattgaatccttt |
115 |
Q |
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| T |
9075665 |
atatagcaaaccaattatttgagaagcttcgattgcagtgattagatttaaaacttttaacacttgaatttcaattttttggtataatattgaatccttt |
9075764 |
T |
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| Q |
116 |
accatccatttgtcaaagttcactctaaagttatttaaattcacacatg |
164 |
Q |
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| T |
9075765 |
accatccatttatcaaagttcactctaaagttatttaaattcacacatg |
9075813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 9075878 - 9076026
Alignment:
| Q |
229 |
atctgcgaatctgttgcatgtaatgtttggtttgtcttttagtttaagttaattaaatttgaagtttgaaag-catcttggacgttggttaatttgaata |
327 |
Q |
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| T |
9075878 |
atctgcgaatctgttgcatgtaatgtttgttttgtcttttagtttaagttaattaaatttgaagtttgaaagacatcttggacgttggttaatttgaata |
9075977 |
T |
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| Q |
328 |
gaatgattggttgaacttatagttgtgctgaaatttgaaatcgtatcat |
376 |
Q |
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| T |
9075978 |
gaatgattggttgaacttatagttgtgctgaaatttgaaattgtatcat |
9076026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 8533640 - 8533506
Alignment:
| Q |
25 |
aaccaattatttgaggagcttcgattgcagtgattagatttaaaactttaacacttgaatttcaattttttggtataatattgaatcctttaccatccat |
124 |
Q |
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| T |
8533640 |
aaccaattatttgaggagctttgattgcattgactagatttaaaacttcaacagttgaatttcaattttttggtataatattgaatcatttaccatcctt |
8533541 |
T |
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| Q |
125 |
ttgtcaaagttcactctaaagttatttaaattcacacatg |
164 |
Q |
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| T |
8533540 |
ttgtc-aagttcactc----gttatttaaattcagacatg |
8533506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 8640062 - 8639949
Alignment:
| Q |
55 |
tgattagatttaaaacttt-aacacttgaatttcaatttttt-ggtataatattgaatcctttaccatc---catttgtcaaagttcactctaaagttat |
149 |
Q |
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|||||| |||||||||||| |||| |||||||||||||||| || || ||| |||| ||||||||||| | |||||||| ||||||| ||||||||| |
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| T |
8640062 |
tgattaaatttaaaacttttaacaaatgaatttcaatttttttggcatgatagtgaaccctttaccatcatccttttgtcaa-gttcactttaaagttat |
8639964 |
T |
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| Q |
150 |
ttaaattcacacatg |
164 |
Q |
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| T |
8639963 |
ttaaattcagacatg |
8639949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 8677101 - 8676994
Alignment:
| Q |
61 |
gatttaaaacttt-aacacttgaatttcaatt-ttttggtataatattgaatcctttac---catccatttgtcaaagttcactctaaagttatttaaat |
155 |
Q |
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||||||||||||| |||| ||||||||||||| |||||| || |||||||| ||||||| ||||| |||||| ||||||||| | | ||||||||||| |
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| T |
8677101 |
gatttaaaacttttaacaattgaatttcaatttttttggcatgatattgaaccctttaccatcatccttttgtc-aagttcactttgacgttatttaaat |
8677003 |
T |
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| Q |
156 |
tcacacatg |
164 |
Q |
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| T |
8677002 |
tcagacatg |
8676994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 8534039 - 8533941
Alignment:
| Q |
55 |
tgattagatttaaaactttaacacttgaatttcaattttt-tggtataatattgaatcctttaccatccatttgtcaaagttcactctaaagttatttaa |
153 |
Q |
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| T |
8534039 |
tgattagatttaaaa-tttaatgattgaatttcaattttggtggcatgatattgaaccctttac-atccttttgtcac-gttcactttaaagttatttaa |
8533943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 26325543 - 26325615
Alignment:
| Q |
25 |
aaccaattatttgaggagcttcgattgcagtgatt-agatttaaaactttaacacttgaatttcaattttttg |
96 |
Q |
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|||||||||||||| |||||| ||||||| || || ||||||||||||| |||| |||||||||||| ||||| |
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| T |
26325543 |
aaccaattatttgatgagctttgattgcattggtttagatttaaaacttcaacagttgaatttcaatcttttg |
26325615 |
T |
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