View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5939_high_18 (Length: 385)
Name: NF5939_high_18
Description: NF5939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5939_high_18 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 22773768 - 22774162
Alignment:
| Q |
4 |
catttgtctcttcactctctggtggttctcttttccaggtattgttttttcacgcgcttcgttaatttcattttcacgcgctcctttcttttaatcttat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
22773768 |
catttgtctcttcactctctggtggttctcttttccaggtatcgtttcttcacgcgcttcgctaatttcattttcacccgctcttttcttttaatcttat |
22773867 |
T |
|
| Q |
104 |
catgatcttgttctttatgctttctaactactaattagcgtcattcttttgttcaaaatttctgattagcgataacgaaagttgaagattaatatgcaaa |
203 |
Q |
| |
|
|| ||||||||||||||| |||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22773868 |
cacgatcttgttctttattctttctaattactaattagcgacattattttgttcaaagtttctgattagcgataacgaaagttgaagattaatatgcaaa |
22773967 |
T |
|
| Q |
204 |
ttataagattatttaaattttaatgtcactaactgttcttaggaattgaata----------------tgtgttcataagtcgtattaccgttcttaatt |
287 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22773968 |
ttataagattatttaaattttaatgtcgctaactgttcttaggaattgaatataattagcaacattcctgtgttcataagtcgtattaccgttcttaatt |
22774067 |
T |
|
| Q |
288 |
taggatttgtgattataaagatagaaaacgaaagttgaagtttagtgtagttcaattcagagttgtgataaaaaagattaagtgtagttttaataaaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22774068 |
taggatttgtgattataaagatagaaaacgaaagttgaag---agtgtagttaaattcagagttttgataaaaaagattaagtgtagttttaataaaa |
22774162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 454797 - 454834
Alignment:
| Q |
8 |
tgtctcttcactctctggtggttctcttttccaggtat |
45 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
454797 |
tgtcccttcactctctggtggttctcttttccaggtat |
454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University